Wall clock time and date at job start Tue Mar 31 2020 06:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47239 * 2 1 4 4 C 1.50702 * 109.47376 * 240.00177 * 2 1 3 5 5 H 1.07999 * 120.00190 * 245.46169 * 4 2 1 6 6 C 1.37873 * 119.99906 * 65.45169 * 4 2 1 7 7 N 1.31514 * 119.99981 * 9.56184 * 6 4 2 8 8 Si 1.86807 * 120.00192 * 189.55470 * 6 4 2 9 9 H 1.48499 * 109.46825 * 84.99459 * 8 6 4 10 10 H 1.48494 * 109.47286 * 204.99663 * 8 6 4 11 11 H 1.48504 * 109.46990 * 325.00078 * 8 6 4 12 12 N 1.46903 * 109.47740 * 119.99954 * 2 1 3 13 13 C 1.46901 * 110.99691 * 275.00321 * 12 2 1 14 14 H 1.08999 * 109.47513 * 34.99536 * 13 12 2 15 15 C 1.52999 * 109.46949 * 274.99407 * 13 12 2 16 16 C 1.50706 * 109.46977 * 154.99906 * 13 12 2 17 17 O 1.21280 * 119.99937 * 359.97438 * 16 13 12 18 18 N 1.34778 * 119.99666 * 179.97438 * 16 13 12 19 19 C 1.46499 * 119.99294 * 179.97438 * 18 16 13 20 20 H 1.09001 * 109.47379 * 34.99954 * 19 18 16 21 21 C 1.53004 * 109.47233 * 274.99466 * 19 18 16 22 22 C 1.52994 * 109.47027 * 300.00544 * 21 19 18 23 23 C 1.53001 * 109.47486 * 299.99590 * 22 21 19 24 24 C 1.53004 * 109.46653 * 60.00181 * 23 22 21 25 25 C 1.53002 * 109.47348 * 299.99770 * 24 23 22 26 26 H 1.08996 * 109.47043 * 300.00903 * 25 24 23 27 27 C 1.52997 * 109.47076 * 180.02562 * 25 24 23 28 28 H 1.08990 * 109.47554 * 63.67957 * 1 2 3 29 29 H 1.09006 * 109.46782 * 183.68118 * 1 2 3 30 30 H 1.09002 * 109.46925 * 303.67415 * 1 2 3 31 31 H 0.97005 * 119.99848 * 179.97438 * 7 6 4 32 32 H 1.00902 * 110.99532 * 38.94883 * 12 2 1 33 33 H 1.09004 * 109.47185 * 180.02562 * 15 13 12 34 34 H 1.09001 * 109.47418 * 299.99927 * 15 13 12 35 35 H 1.08997 * 109.47346 * 60.00551 * 15 13 12 36 36 H 0.96998 * 120.00317 * 359.97438 * 18 16 13 37 37 H 1.09001 * 109.47096 * 180.02562 * 21 19 18 38 38 H 1.08994 * 109.46833 * 60.00296 * 21 19 18 39 39 H 1.09001 * 109.47031 * 179.97438 * 22 21 19 40 40 H 1.09001 * 109.47261 * 60.00005 * 22 21 19 41 41 H 1.09001 * 109.47210 * 300.00446 * 23 22 21 42 42 H 1.08992 * 109.47440 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.46861 * 180.02562 * 24 23 22 44 44 H 1.08997 * 109.47390 * 60.00584 * 24 23 22 45 45 H 1.08994 * 109.46984 * 60.00651 * 27 25 24 46 46 H 1.09001 * 109.47217 * 300.00332 * 27 25 24 47 47 H 1.09005 * 109.46646 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5786 -1.6370 -1.1339 6 6 1.7945 -0.1774 -2.4796 7 7 1.2991 1.0355 -2.5935 8 14 2.1761 -1.1780 -4.0102 9 1 1.0242 -2.0611 -4.3241 10 1 2.4226 -0.2613 -5.1521 11 1 3.3846 -2.0071 -3.7710 12 7 2.0198 -0.6925 1.1994 13 6 2.0825 0.2227 2.3468 14 1 1.2577 0.9330 2.2907 15 6 3.4112 0.9810 2.3223 16 6 1.9788 -0.5676 3.6259 17 8 1.8635 -1.7742 3.5855 18 7 2.0142 0.0667 4.8146 19 6 1.9128 -0.7015 6.0579 20 1 2.4151 -1.6610 5.9342 21 6 0.4387 -0.9369 6.3932 22 6 -0.2662 0.4098 6.5668 23 6 0.3970 1.1899 7.7037 24 6 1.8712 1.4253 7.3684 25 6 2.5762 0.0785 7.1948 26 1 2.5007 -0.4930 8.1199 27 6 4.0504 0.3139 6.8602 28 1 -0.3634 0.4556 -0.9210 29 1 -0.3633 -1.0256 0.0660 30 1 -0.3633 0.5698 0.8552 31 1 1.1320 1.4107 -3.4723 32 1 1.4496 -1.4979 1.4101 33 1 3.4579 1.6597 3.1739 34 1 4.2360 0.2707 2.3785 35 1 3.4862 1.5526 1.3972 36 1 2.1069 1.0317 4.8469 37 1 0.3632 -1.5081 7.3185 38 1 -0.0339 -1.4926 5.5832 39 1 -1.3165 0.2421 6.8052 40 1 -0.1908 0.9813 5.6417 41 1 0.3216 0.6184 8.6288 42 1 -0.1054 2.1491 7.8277 43 1 2.3439 1.9806 8.1786 44 1 1.9467 1.9968 6.4434 45 1 4.5227 0.8694 7.6704 46 1 4.1263 0.8856 5.9352 47 1 4.5525 -0.6456 6.7361 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:21 Heat of formation + Delta-G solvation = -65.349999 kcal Electronic energy + Delta-G solvation = -23544.334078 eV Core-core repulsion = 20339.666174 eV Total energy + Delta-G solvation = -3204.667904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.38936 -38.39167 -35.83891 -33.71955 -32.86636 -32.66076 -30.77604 -29.62270 -27.02246 -26.43741 -25.09765 -23.81073 -22.54202 -21.61147 -20.56852 -19.56248 -19.08502 -17.37541 -16.05048 -15.82584 -15.56500 -15.08656 -14.79067 -14.58359 -14.35647 -13.96942 -13.67917 -13.34625 -13.06464 -12.70677 -12.61279 -12.32562 -12.14020 -11.93514 -11.84140 -11.80547 -11.71639 -11.49177 -11.29544 -11.11911 -10.87355 -10.79383 -10.75578 -10.50958 -10.49116 -10.18210 -10.13764 -9.84940 -9.31585 -8.98008 -8.88593 -8.28695 -7.24781 -5.97363 -3.95666 2.97999 3.34284 3.37306 3.42874 3.47963 4.39824 4.48591 4.49526 4.54068 4.86733 4.97626 5.06117 5.18472 5.21397 5.25235 5.27983 5.35907 5.38730 5.42013 5.57846 5.62618 5.66133 5.73449 5.77761 5.81636 5.87372 5.97723 6.04314 6.07600 6.10913 6.16373 6.20623 6.35184 6.62641 6.65029 6.70078 6.79362 7.05136 7.30950 7.63266 7.67689 7.93853 8.24282 8.50503 8.60932 8.66732 9.11312 9.67718 11.12185 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031393 B = 0.003604 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.699673 B = 7767.916781 C = 7952.402049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.209 3.791 3 H 0.043 0.957 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.666 5.666 13 C 0.068 3.932 14 H 0.058 0.942 15 C -0.130 4.130 16 C 0.516 3.484 17 O -0.533 6.533 18 N -0.725 5.725 19 C 0.151 3.849 20 H 0.086 0.914 21 C -0.131 4.131 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.098 4.098 26 H 0.081 0.919 27 C -0.148 4.148 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.007 0.993 31 H 0.259 0.741 32 H 0.339 0.661 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.397 0.603 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.259 3.104 21.962 22.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.102 3.898 3 H 0.061 0.939 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.722 3.278 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.300 5.300 13 C -0.046 4.046 14 H 0.076 0.924 15 C -0.189 4.189 16 C 0.303 3.697 17 O -0.408 6.408 18 N -0.380 5.380 19 C 0.046 3.954 20 H 0.104 0.896 21 C -0.170 4.170 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.154 4.154 25 C -0.117 4.117 26 H 0.099 0.901 27 C -0.205 4.205 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.160 0.840 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.232 0.768 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.796 2.419 21.620 21.769 hybrid contribution -0.883 0.149 -0.684 1.127 sum -0.088 2.569 20.936 21.093 Atomic orbital electron populations 1.22406 1.01227 0.98660 1.00046 1.19277 0.88986 0.95063 0.86497 0.93941 1.21085 1.34401 1.08231 0.89548 0.91875 1.24924 0.95648 0.94759 0.98947 1.69964 1.45964 1.14063 1.23626 0.86583 0.78738 0.80033 0.82491 1.20756 1.21513 1.19892 1.60837 1.59071 1.08346 1.01700 1.21455 0.98773 0.95129 0.89260 0.92410 1.21713 0.96281 0.99218 1.01641 1.21090 0.74718 0.88587 0.85340 1.90650 1.48443 1.14543 1.87162 1.46121 1.75925 1.10662 1.05261 1.20888 0.95490 0.95663 0.83343 0.89574 1.21920 0.95726 0.97436 1.01872 1.21500 0.98984 0.96367 0.98821 1.21545 0.95441 1.00116 0.98563 1.21609 0.95457 0.96663 1.01624 1.21411 0.95243 0.96781 0.98235 0.90056 1.21825 0.94984 1.02059 1.01663 0.90927 0.95047 0.97363 0.93115 0.84039 0.93660 0.91937 0.90934 0.76786 0.91404 0.91274 0.92178 0.91802 0.92043 0.92058 0.91713 0.91985 0.92666 0.92254 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 9.03 37.16 0.34 -3.61 16 2 C 0.21 5.29 2.25 -68.86 -0.15 5.14 16 3 H 0.04 1.15 7.06 -51.93 -0.37 0.79 16 4 C -0.49 -13.91 8.76 -34.44 -0.30 -14.21 16 5 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 6 C 0.06 1.63 5.17 -17.82 -0.09 1.53 16 7 N -0.90 -25.83 12.16 55.43 0.67 -25.16 16 8 Si 0.89 21.82 29.55 -169.99 -5.02 16.79 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.67 -14.88 5.92 -102.17 -0.60 -15.49 16 13 C 0.07 1.21 2.84 -68.86 -0.20 1.02 16 14 H 0.06 1.03 7.14 -51.93 -0.37 0.66 16 15 C -0.13 -2.08 9.29 37.16 0.35 -1.74 16 16 C 0.52 8.51 7.15 -10.98 -0.08 8.43 16 17 O -0.53 -10.68 15.31 5.56 0.09 -10.59 16 18 N -0.73 -8.72 3.43 -53.80 -0.18 -8.91 16 19 C 0.15 1.63 2.23 -67.92 -0.15 1.47 16 20 H 0.09 1.11 7.58 -51.93 -0.39 0.71 16 21 C -0.13 -1.36 5.60 -26.73 -0.15 -1.51 16 22 C -0.12 -1.09 5.76 -26.73 -0.15 -1.24 16 23 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 24 C -0.12 -0.83 5.03 -26.73 -0.13 -0.97 16 25 C -0.10 -0.79 2.51 -90.62 -0.23 -1.01 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 27 C -0.15 -1.21 9.04 37.16 0.34 -0.87 16 28 H 0.07 1.90 6.83 -51.93 -0.35 1.55 16 29 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 30 H 0.01 0.16 7.47 -51.93 -0.39 -0.23 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.34 7.84 7.14 -39.29 -0.28 7.55 16 33 H 0.04 0.55 7.56 -51.93 -0.39 0.15 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.29 7.43 -51.93 -0.39 0.91 16 36 H 0.40 4.01 6.07 -40.82 -0.25 3.77 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.65 7.60 -51.93 -0.39 0.25 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.46 6.51 -51.93 -0.34 0.12 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.52 7.45 -51.93 -0.39 0.13 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -30.41 359.75 -8.91 -39.31 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -8.49 Total: 7.21 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -0.78 Total: -8.59 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.12 Total: -49.55 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.41 -8.91 -39.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.036 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds