Wall clock time and date at job start Tue Mar 31 2020 06:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47414 * 2 1 4 4 N 1.46900 * 109.47170 * 119.99949 * 2 1 3 5 5 C 1.46895 * 111.00003 * 281.89586 * 4 2 1 6 6 H 1.08999 * 109.47220 * 32.37029 * 5 4 2 7 7 C 1.53001 * 109.47100 * 152.37033 * 5 4 2 8 8 C 1.50702 * 109.47082 * 272.36722 * 5 4 2 9 9 H 1.07995 * 120.00002 * 0.02562 * 8 5 4 10 10 C 1.37882 * 120.00105 * 179.97438 * 8 5 4 11 11 N 1.31509 * 119.99698 * 180.02562 * 10 8 5 12 12 Si 1.86802 * 119.99979 * 0.02562 * 10 8 5 13 13 H 1.48505 * 109.46856 * 89.99823 * 12 10 8 14 14 H 1.48492 * 109.47117 * 209.99840 * 12 10 8 15 15 H 1.48499 * 109.46938 * 330.00263 * 12 10 8 16 16 C 1.50693 * 109.47239 * 240.00043 * 2 1 3 17 17 O 1.21283 * 119.99997 * 253.94146 * 16 2 1 18 18 N 1.34778 * 120.00140 * 73.94526 * 16 2 1 19 19 C 1.46924 * 120.62833 * 355.37599 * 18 16 2 20 20 C 1.53193 * 108.77099 * 126.41813 * 19 18 16 21 21 H 1.09004 * 109.49903 * 294.68307 * 20 19 18 22 22 C 1.53004 * 109.49602 * 174.58757 * 20 19 18 23 23 C 1.53040 * 109.31360 * 54.63874 * 20 19 18 24 24 C 1.53046 * 109.53807 * 298.63051 * 23 20 19 25 25 H 1.09004 * 109.49624 * 301.42224 * 24 23 20 26 26 C 1.53000 * 109.49902 * 181.31811 * 24 23 20 27 27 C 1.46932 * 120.63306 * 175.40759 * 18 16 2 28 28 H 1.08996 * 109.47011 * 174.01992 * 1 2 3 29 29 H 1.08995 * 109.46979 * 294.02628 * 1 2 3 30 30 H 1.08996 * 109.46709 * 54.02327 * 1 2 3 31 31 H 1.00895 * 111.00357 * 157.93878 * 4 2 1 32 32 H 1.08995 * 109.47463 * 66.34192 * 7 5 4 33 33 H 1.09008 * 109.47071 * 186.33936 * 7 5 4 34 34 H 1.09001 * 109.47320 * 306.33711 * 7 5 4 35 35 H 0.97008 * 119.99569 * 180.02562 * 11 10 8 36 36 H 1.08999 * 109.59150 * 246.20526 * 19 18 16 37 37 H 1.08994 * 109.58686 * 6.48907 * 19 18 16 38 38 H 1.09001 * 109.47052 * 300.16019 * 22 20 19 39 39 H 1.08999 * 109.46849 * 60.16251 * 22 20 19 40 40 H 1.09001 * 109.46771 * 180.16032 * 22 20 19 41 41 H 1.08999 * 109.45881 * 178.61619 * 23 20 19 42 42 H 1.08994 * 109.46389 * 58.65452 * 23 20 19 43 43 H 1.08998 * 109.46731 * 59.99923 * 26 24 23 44 44 H 1.08999 * 109.46590 * 180.02562 * 26 24 23 45 45 H 1.09002 * 109.46833 * 300.00450 * 26 24 23 46 46 H 1.08994 * 109.58860 * 113.79024 * 27 18 16 47 47 H 1.09000 * 109.58222 * 353.37183 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.9287 0.1744 2.3818 6 1 1.0680 0.8358 2.2821 7 6 1.7666 -0.6880 3.6352 8 6 3.1849 0.9987 2.4983 9 1 3.9719 0.8898 1.7668 10 6 3.3289 1.8927 3.5381 11 7 4.4250 2.6124 3.6393 12 14 1.9673 2.0816 4.8029 13 1 2.1930 1.1285 5.9191 14 1 1.9698 3.4701 5.3293 15 1 0.6567 1.7961 4.1656 16 6 2.0324 -0.7104 -1.2304 17 8 2.5084 -1.8219 -1.1370 18 7 1.9527 -0.1104 -2.4347 19 6 1.2880 1.1918 -2.5797 20 6 2.2511 2.1627 -3.2701 21 1 3.1088 2.3462 -2.6229 22 6 1.5309 3.4830 -3.5513 23 6 2.7282 1.5502 -4.5890 24 6 3.4774 0.2460 -4.3062 25 1 4.3235 0.4476 -3.6491 26 6 3.9824 -0.3486 -5.6224 27 6 2.5282 -0.7466 -3.6275 28 1 -0.3633 -1.0220 -0.1071 29 1 -0.3633 0.4184 0.9386 30 1 -0.3632 0.6037 -0.8316 31 1 2.9633 -1.0238 1.0658 32 1 2.6754 -1.2675 3.7975 33 1 1.5864 -0.0457 4.4974 34 1 0.9225 -1.3650 3.5038 35 1 4.5265 3.2411 4.3711 36 1 0.3884 1.0776 -3.1844 37 1 1.0204 1.5770 -1.5959 38 1 0.6726 3.2982 -4.1974 39 1 1.1913 3.9188 -2.6117 40 1 2.2157 4.1724 -4.0451 41 1 3.3945 2.2495 -5.0941 42 1 1.8680 1.3441 -5.2258 43 1 4.6554 0.3592 -6.1063 44 1 4.5155 -1.2776 -5.4204 45 1 3.1355 -0.5511 -6.2781 46 1 1.7298 -1.0189 -4.3177 47 1 3.0811 -1.6392 -3.3348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602866079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:35 Heat of formation + Delta-G solvation = -46.942614 kcal Electronic energy + Delta-G solvation = -23845.005448 eV Core-core repulsion = 20641.135748 eV Total energy + Delta-G solvation = -3203.869700 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.29512 -37.96894 -36.05079 -34.04467 -33.46053 -32.69985 -30.97352 -27.85860 -26.86139 -26.81177 -25.77340 -24.93070 -22.88076 -20.94829 -20.32899 -19.73637 -18.78731 -17.05556 -16.79174 -15.99531 -15.29607 -15.13381 -14.93611 -14.75028 -14.33893 -13.86696 -13.39196 -13.11352 -13.03369 -12.81529 -12.74466 -12.47029 -12.23170 -12.13937 -11.99861 -11.90404 -11.78273 -11.75329 -11.34295 -11.20303 -10.96084 -10.89523 -10.77083 -10.67147 -10.60870 -10.42428 -10.00027 -9.56714 -9.28242 -9.15210 -8.61634 -8.49371 -7.40824 -6.13910 -4.15173 2.95769 3.12705 3.25873 3.34391 3.36975 4.35780 4.47145 4.62207 4.67769 4.80297 4.89890 5.06765 5.14616 5.21217 5.24536 5.34911 5.42555 5.44322 5.52852 5.54462 5.60067 5.66163 5.70633 5.77337 5.80230 5.87326 5.95129 5.99279 6.05476 6.08148 6.12830 6.26823 6.33320 6.42350 6.54731 6.57403 6.65434 6.76144 6.98319 7.26889 7.53415 7.56423 8.00351 8.35507 8.45747 8.53910 8.88393 9.49264 10.99110 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019731 B = 0.004784 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.758997 B = 5851.472512 C = 6287.214377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.073 3.927 3 H 0.070 0.930 4 N -0.663 5.663 5 C 0.176 3.824 6 H 0.034 0.966 7 C -0.137 4.137 8 C -0.547 4.547 9 H 0.071 0.929 10 C 0.074 3.926 11 N -0.898 5.898 12 Si 0.892 3.108 13 H -0.278 1.278 14 H -0.298 1.298 15 H -0.266 1.266 16 C 0.521 3.479 17 O -0.531 6.531 18 N -0.617 5.617 19 C 0.109 3.891 20 C -0.112 4.112 21 H 0.079 0.921 22 C -0.145 4.145 23 C -0.106 4.106 24 C -0.109 4.109 25 H 0.075 0.925 26 C -0.143 4.143 27 C 0.118 3.882 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.346 0.654 32 H 0.052 0.948 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.264 0.736 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.163 -0.335 -17.315 18.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.041 4.041 3 H 0.088 0.912 4 N -0.296 5.296 5 C 0.067 3.933 6 H 0.052 0.948 7 C -0.195 4.195 8 C -0.586 4.586 9 H 0.089 0.911 10 C -0.129 4.129 11 N -0.535 5.535 12 Si 0.723 3.277 13 H -0.205 1.205 14 H -0.226 1.226 15 H -0.192 1.192 16 C 0.310 3.690 17 O -0.406 6.406 18 N -0.351 5.351 19 C -0.014 4.014 20 C -0.131 4.131 21 H 0.097 0.903 22 C -0.202 4.202 23 C -0.144 4.144 24 C -0.129 4.129 25 H 0.094 0.906 26 C -0.201 4.201 27 C -0.005 4.005 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.165 0.835 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.412 -1.145 -17.016 18.595 hybrid contribution 0.249 0.989 0.612 1.190 sum -7.163 -0.155 -16.403 17.900 Atomic orbital electron populations 1.21831 0.93409 1.02184 1.02087 1.21329 0.96507 0.97271 0.88967 0.91190 1.60693 1.29725 1.38113 1.01044 1.19632 0.96854 0.90078 0.86750 0.94833 1.22015 1.00324 0.99281 0.97863 1.21729 1.02772 1.21642 1.12413 0.91065 1.24991 0.95386 0.94992 0.97533 1.69922 1.26397 1.25145 1.32050 0.86786 0.83021 0.75918 0.82015 1.20464 1.22611 1.19151 1.21006 0.77667 0.86088 0.84279 1.90648 1.45014 1.19298 1.85637 1.48090 1.58124 1.21122 1.07778 1.21935 0.94643 0.82615 1.02210 1.21551 0.99255 0.94977 0.97308 0.90269 1.21759 1.00261 0.96250 1.01966 1.21636 0.99852 0.96168 0.96750 1.21531 0.98563 0.95515 0.97270 0.90624 1.21747 1.00987 1.00952 0.96410 1.21571 0.96317 0.96351 0.86217 0.92114 0.91212 0.92709 0.83473 0.92931 0.94567 0.94345 0.92632 0.91582 0.88795 0.92660 0.92076 0.92372 0.91753 0.91915 0.92417 0.92403 0.92634 0.92032 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.03 37.16 0.34 -1.79 16 2 C 0.07 1.35 2.02 -68.87 -0.14 1.21 16 3 H 0.07 1.37 6.81 -51.93 -0.35 1.02 16 4 N -0.66 -14.36 5.79 -102.17 -0.59 -14.95 16 5 C 0.18 4.15 1.96 -68.87 -0.14 4.02 16 6 H 0.03 0.80 5.66 -51.93 -0.29 0.50 16 7 C -0.14 -3.09 8.91 37.16 0.33 -2.76 16 8 C -0.55 -15.10 8.95 -34.44 -0.31 -15.41 16 9 H 0.07 2.16 7.95 -52.49 -0.42 1.74 16 10 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 11 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 12 Si 0.89 21.77 24.31 -169.99 -4.13 17.64 16 13 H -0.28 -6.68 6.93 56.52 0.39 -6.29 16 14 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.27 -6.18 6.53 56.52 0.37 -5.81 16 16 C 0.52 9.37 6.90 -10.99 -0.08 9.30 16 17 O -0.53 -11.23 15.48 5.56 0.09 -11.15 16 18 N -0.62 -8.75 2.97 -172.77 -0.51 -9.26 16 19 C 0.11 1.26 4.71 -3.71 -0.02 1.24 16 20 C -0.11 -1.17 2.87 -90.50 -0.26 -1.43 16 21 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 22 C -0.14 -1.26 9.20 37.16 0.34 -0.92 16 23 C -0.11 -0.99 4.45 -26.69 -0.12 -1.11 16 24 C -0.11 -1.15 2.87 -90.50 -0.26 -1.41 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 26 C -0.14 -1.20 9.20 37.16 0.34 -0.86 16 27 C 0.12 1.46 5.70 -3.71 -0.02 1.44 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.13 6.88 -51.93 -0.36 0.77 16 30 H 0.05 0.68 6.10 -51.93 -0.32 0.36 16 31 H 0.35 8.07 7.58 -39.29 -0.30 7.77 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.04 0.82 3.47 -51.92 -0.18 0.64 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.15 4.62 -51.93 -0.24 0.91 16 38 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.09 1.28 7.03 -51.93 -0.37 0.92 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -31.25 351.82 -7.50 -38.75 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -8.34 Total: 6.52 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -0.08 Total: -6.49 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.33 Total: -50.57 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.13 Total: 17.64 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.25 -7.50 -38.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602866079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.197 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds