Wall clock time and date at job start Tue Mar 31 2020 06:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47414 * 2 1 4 4 N 1.46900 * 109.47170 * 119.99949 * 2 1 3 5 5 C 1.46895 * 111.00003 * 281.89586 * 4 2 1 6 6 H 1.08999 * 109.47220 * 32.37029 * 5 4 2 7 7 C 1.53001 * 109.47100 * 152.37033 * 5 4 2 8 8 C 1.50702 * 109.47082 * 272.36722 * 5 4 2 9 9 H 1.07995 * 120.00002 * 0.02562 * 8 5 4 10 10 C 1.37882 * 120.00105 * 179.97438 * 8 5 4 11 11 N 1.31509 * 119.99698 * 180.02562 * 10 8 5 12 12 Si 1.86802 * 119.99979 * 0.02562 * 10 8 5 13 13 H 1.48505 * 109.46856 * 89.99823 * 12 10 8 14 14 H 1.48492 * 109.47117 * 209.99840 * 12 10 8 15 15 H 1.48499 * 109.46938 * 330.00263 * 12 10 8 16 16 C 1.50693 * 109.47239 * 240.00043 * 2 1 3 17 17 O 1.21283 * 119.99997 * 253.94146 * 16 2 1 18 18 N 1.34778 * 120.00140 * 73.94526 * 16 2 1 19 19 C 1.46924 * 120.62833 * 355.37599 * 18 16 2 20 20 C 1.53193 * 108.77099 * 126.41813 * 19 18 16 21 21 H 1.09004 * 109.49903 * 294.68307 * 20 19 18 22 22 C 1.53004 * 109.49602 * 174.58757 * 20 19 18 23 23 C 1.53040 * 109.31360 * 54.63874 * 20 19 18 24 24 C 1.53046 * 109.53807 * 298.63051 * 23 20 19 25 25 H 1.09004 * 109.49624 * 301.42224 * 24 23 20 26 26 C 1.53000 * 109.49902 * 181.31811 * 24 23 20 27 27 C 1.46932 * 120.63306 * 175.40759 * 18 16 2 28 28 H 1.08996 * 109.47011 * 174.01992 * 1 2 3 29 29 H 1.08995 * 109.46979 * 294.02628 * 1 2 3 30 30 H 1.08996 * 109.46709 * 54.02327 * 1 2 3 31 31 H 1.00895 * 111.00357 * 157.93878 * 4 2 1 32 32 H 1.08995 * 109.47463 * 66.34192 * 7 5 4 33 33 H 1.09008 * 109.47071 * 186.33936 * 7 5 4 34 34 H 1.09001 * 109.47320 * 306.33711 * 7 5 4 35 35 H 0.97008 * 119.99569 * 180.02562 * 11 10 8 36 36 H 1.08999 * 109.59150 * 246.20526 * 19 18 16 37 37 H 1.08994 * 109.58686 * 6.48907 * 19 18 16 38 38 H 1.09001 * 109.47052 * 300.16019 * 22 20 19 39 39 H 1.08999 * 109.46849 * 60.16251 * 22 20 19 40 40 H 1.09001 * 109.46771 * 180.16032 * 22 20 19 41 41 H 1.08999 * 109.45881 * 178.61619 * 23 20 19 42 42 H 1.08994 * 109.46389 * 58.65452 * 23 20 19 43 43 H 1.08998 * 109.46731 * 59.99923 * 26 24 23 44 44 H 1.08999 * 109.46590 * 180.02562 * 26 24 23 45 45 H 1.09002 * 109.46833 * 300.00450 * 26 24 23 46 46 H 1.08994 * 109.58860 * 113.79024 * 27 18 16 47 47 H 1.09000 * 109.58222 * 353.37183 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.9287 0.1744 2.3818 6 1 1.0680 0.8358 2.2821 7 6 1.7666 -0.6880 3.6352 8 6 3.1849 0.9987 2.4983 9 1 3.9719 0.8898 1.7668 10 6 3.3289 1.8927 3.5381 11 7 4.4250 2.6124 3.6393 12 14 1.9673 2.0816 4.8029 13 1 2.1930 1.1285 5.9191 14 1 1.9698 3.4701 5.3293 15 1 0.6567 1.7961 4.1656 16 6 2.0324 -0.7104 -1.2304 17 8 2.5084 -1.8219 -1.1370 18 7 1.9527 -0.1104 -2.4347 19 6 1.2880 1.1918 -2.5797 20 6 2.2511 2.1627 -3.2701 21 1 3.1088 2.3462 -2.6229 22 6 1.5309 3.4830 -3.5513 23 6 2.7282 1.5502 -4.5890 24 6 3.4774 0.2460 -4.3062 25 1 4.3235 0.4476 -3.6491 26 6 3.9824 -0.3486 -5.6224 27 6 2.5282 -0.7466 -3.6275 28 1 -0.3633 -1.0220 -0.1071 29 1 -0.3633 0.4184 0.9386 30 1 -0.3632 0.6037 -0.8316 31 1 2.9633 -1.0238 1.0658 32 1 2.6754 -1.2675 3.7975 33 1 1.5864 -0.0457 4.4974 34 1 0.9225 -1.3650 3.5038 35 1 4.5265 3.2411 4.3711 36 1 0.3884 1.0776 -3.1844 37 1 1.0204 1.5770 -1.5959 38 1 0.6726 3.2982 -4.1974 39 1 1.1913 3.9188 -2.6117 40 1 2.2157 4.1724 -4.0451 41 1 3.3945 2.2495 -5.0941 42 1 1.8680 1.3441 -5.2258 43 1 4.6554 0.3592 -6.1063 44 1 4.5155 -1.2776 -5.4204 45 1 3.1355 -0.5511 -6.2781 46 1 1.7298 -1.0189 -4.3177 47 1 3.0811 -1.6392 -3.3348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602866079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:35 Heat of formation + Delta-G solvation = -68.371180 kcal Electronic energy + Delta-G solvation = -23845.934660 eV Core-core repulsion = 20641.135748 eV Total energy + Delta-G solvation = -3204.798912 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53293 -39.16169 -37.76058 -35.25026 -34.52914 -34.40493 -32.75338 -29.42647 -27.77365 -27.59640 -27.04636 -26.88607 -24.23617 -21.90642 -21.75859 -21.03821 -20.07597 -19.05510 -18.18739 -17.35903 -16.93347 -16.45354 -16.10764 -15.84369 -15.66894 -15.25144 -14.81396 -14.71844 -14.22433 -14.00050 -13.94424 -13.78546 -13.56347 -13.35054 -13.23485 -13.06537 -12.91111 -12.86239 -12.73764 -12.56017 -12.49278 -12.42969 -11.92246 -11.81330 -11.78156 -11.51065 -11.43768 -11.28595 -11.26020 -10.79210 -10.61402 -9.64846 -9.21242 -8.34225 -6.40969 1.33056 1.35723 1.47596 1.54765 1.93935 2.30140 3.01606 3.36608 3.50035 3.69033 3.82342 3.88255 3.92900 4.17589 4.27445 4.29214 4.38376 4.49436 4.54676 4.60033 4.63975 4.68238 4.69814 4.80375 4.82062 4.83352 4.87618 4.89647 4.97316 5.04713 5.05721 5.07242 5.19894 5.25200 5.28954 5.31613 5.38008 5.45273 5.49439 5.51088 5.57735 6.02148 6.27754 6.36049 6.52536 6.68919 7.13203 7.27779 8.82439 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019731 B = 0.004784 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.758997 B = 5851.472512 C = 6287.214377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.070 3.930 3 H 0.055 0.945 4 N -0.662 5.662 5 C 0.182 3.818 6 H 0.043 0.957 7 C -0.135 4.135 8 C -0.548 4.548 9 H 0.024 0.976 10 C 0.017 3.983 11 N -0.947 5.947 12 Si 0.955 3.045 13 H -0.268 1.268 14 H -0.297 1.297 15 H -0.240 1.240 16 C 0.516 3.484 17 O -0.573 6.573 18 N -0.609 5.609 19 C 0.102 3.898 20 C -0.111 4.111 21 H 0.045 0.955 22 C -0.139 4.139 23 C -0.100 4.100 24 C -0.106 4.106 25 H 0.045 0.955 26 C -0.138 4.138 27 C 0.115 3.885 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.331 0.669 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.064 0.936 35 H 0.266 0.734 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.051 0.949 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.228 0.112 -18.748 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.044 4.044 3 H 0.073 0.927 4 N -0.292 5.292 5 C 0.072 3.928 6 H 0.060 0.940 7 C -0.193 4.193 8 C -0.587 4.587 9 H 0.042 0.958 10 C -0.181 4.181 11 N -0.586 5.586 12 Si 0.781 3.219 13 H -0.195 1.195 14 H -0.225 1.225 15 H -0.164 1.164 16 C 0.305 3.695 17 O -0.452 6.452 18 N -0.342 5.342 19 C -0.020 4.020 20 C -0.130 4.130 21 H 0.063 0.937 22 C -0.197 4.197 23 C -0.138 4.138 24 C -0.126 4.126 25 H 0.063 0.937 26 C -0.195 4.195 27 C -0.007 4.007 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.148 0.852 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.505 -0.678 -18.500 21.285 hybrid contribution 1.305 0.867 0.937 1.826 sum -9.199 0.189 -17.563 19.828 Atomic orbital electron populations 1.21803 0.90512 1.02900 1.03418 1.21453 0.98675 0.95965 0.88280 0.92745 1.60758 1.28572 1.37926 1.01982 1.19544 0.94759 0.90140 0.88343 0.93957 1.21961 1.00987 0.99391 0.96924 1.21955 1.03262 1.22318 1.11196 0.95778 1.25888 0.97922 0.94487 0.99806 1.70075 1.28927 1.26358 1.33260 0.85761 0.80747 0.76027 0.79320 1.19451 1.22480 1.16398 1.20928 0.77568 0.85704 0.85316 1.90623 1.47143 1.21079 1.86355 1.48161 1.57128 1.21735 1.07127 1.22207 0.95846 0.81289 1.02619 1.21521 0.98100 0.96012 0.97386 0.93659 1.21724 1.00902 0.94921 1.02153 1.21620 1.00677 0.95242 0.96219 1.21492 0.97303 0.96094 0.97682 0.93665 1.21711 1.01786 1.00744 0.95291 1.21750 0.97260 0.95900 0.85795 0.92091 0.91488 0.89304 0.85218 0.93988 0.94411 0.91680 0.92464 0.88224 0.89682 0.90434 0.92779 0.91838 0.90729 0.89574 0.91450 0.93018 0.90770 0.89289 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 9.03 71.98 0.65 -3.10 16 2 C 0.07 2.60 2.02 44.17 0.09 2.69 16 3 H 0.05 2.20 6.81 -2.39 -0.02 2.19 16 4 N -0.66 -29.19 5.79 -477.17 -2.76 -31.95 16 5 C 0.18 8.55 1.96 44.17 0.09 8.64 16 6 H 0.04 1.94 5.66 -2.39 -0.01 1.93 16 7 C -0.13 -5.87 8.91 71.98 0.64 -5.23 16 8 C -0.55 -31.32 8.95 25.60 0.23 -31.09 16 9 H 0.02 1.56 7.95 -2.91 -0.02 1.53 16 10 C 0.02 1.00 5.45 84.66 0.46 1.46 16 11 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 12 Si 0.96 44.22 24.31 68.60 1.67 45.89 16 13 H -0.27 -12.01 6.93 99.48 0.69 -11.32 16 14 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 15 H -0.24 -10.07 6.53 99.48 0.65 -9.42 16 16 C 0.52 18.97 6.90 87.65 0.60 19.57 16 17 O -0.57 -25.22 15.48 -3.04 -0.05 -25.27 16 18 N -0.61 -17.02 2.97 -818.92 -2.43 -19.45 16 19 C 0.10 2.17 4.71 86.36 0.41 2.58 16 20 C -0.11 -2.19 2.87 -10.71 -0.03 -2.22 16 21 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 22 C -0.14 -2.10 9.20 71.98 0.66 -1.43 16 23 C -0.10 -1.62 4.45 30.62 0.14 -1.48 16 24 C -0.11 -2.15 2.87 -10.71 -0.03 -2.18 16 25 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 26 C -0.14 -2.07 9.20 71.98 0.66 -1.40 16 27 C 0.11 2.76 5.70 86.36 0.49 3.25 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 2.00 6.88 -2.39 -0.02 1.98 16 30 H 0.09 1.95 6.10 -2.39 -0.01 1.93 16 31 H 0.33 16.25 7.58 -89.70 -0.68 15.57 16 32 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.04 1.62 3.47 -2.38 -0.01 1.61 16 34 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.97 4.62 -2.39 -0.01 1.96 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.06 1.90 7.03 -2.39 -0.02 1.88 16 Total: -1.00 -70.97 351.82 1.97 -69.00 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: 0.18 Total: 30.49 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 5.06 Total: -9.95 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -4.90 Total: -110.16 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.05 Total: -25.27 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.67 Total: 45.89 kcal Total: -70.97 1.97 -69.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602866079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.634 kcal (2) G-P(sol) polarization free energy of solvation -70.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds