Wall clock time and date at job start Tue Mar 31 2020 06:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47142 * 2 1 4 4 C 1.50699 * 109.47585 * 240.00292 * 2 1 3 5 5 H 1.08003 * 120.00041 * 240.00526 * 4 2 1 6 6 C 1.37878 * 119.99981 * 59.99254 * 4 2 1 7 7 N 1.31517 * 120.00180 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99706 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47400 * 60.00121 * 8 6 4 10 10 H 1.48503 * 109.46738 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46977 * 300.00157 * 8 6 4 12 12 N 1.46901 * 109.47147 * 119.99549 * 2 1 3 13 13 C 1.46897 * 111.00350 * 275.00199 * 12 2 1 14 14 H 1.09008 * 109.46796 * 34.99973 * 13 12 2 15 15 C 1.53001 * 109.47187 * 275.00328 * 13 12 2 16 16 C 1.50692 * 109.47183 * 154.99924 * 13 12 2 17 17 O 1.21281 * 119.99828 * 24.65426 * 16 13 12 18 18 N 1.34781 * 120.00232 * 204.65008 * 16 13 12 19 19 C 1.46922 * 120.63140 * 184.68304 * 18 16 13 20 20 C 1.53198 * 108.77309 * 126.37259 * 19 18 16 21 21 H 1.09000 * 109.49441 * 294.68668 * 20 19 18 22 22 C 1.53003 * 109.49628 * 174.58977 * 20 19 18 23 23 C 1.53032 * 109.30951 * 54.63433 * 20 19 18 24 24 C 1.53037 * 109.54428 * 298.63502 * 23 20 19 25 25 H 1.08999 * 109.49583 * 301.41724 * 24 23 20 26 26 C 1.53003 * 109.49998 * 181.31897 * 24 23 20 27 27 C 1.46921 * 120.62716 * 4.41414 * 18 16 13 28 28 H 1.09005 * 109.46665 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46792 * 60.00417 * 1 2 3 30 30 H 1.08994 * 109.46954 * 299.99808 * 1 2 3 31 31 H 0.96993 * 119.99612 * 179.97438 * 7 6 4 32 32 H 1.00900 * 110.99880 * 38.95679 * 12 2 1 33 33 H 1.08993 * 109.47210 * 55.01803 * 15 13 12 34 34 H 1.08996 * 109.47161 * 175.02493 * 15 13 12 35 35 H 1.09000 * 109.46693 * 295.01638 * 15 13 12 36 36 H 1.09006 * 109.58953 * 246.16186 * 19 18 16 37 37 H 1.08999 * 109.59010 * 6.58992 * 19 18 16 38 38 H 1.08997 * 109.47637 * 59.99678 * 22 20 19 39 39 H 1.09003 * 109.46592 * 180.02562 * 22 20 19 40 40 H 1.09001 * 109.46730 * 299.99504 * 22 20 19 41 41 H 1.09004 * 109.46333 * 58.65942 * 23 20 19 42 42 H 1.09003 * 109.46279 * 178.61312 * 23 20 19 43 43 H 1.08994 * 109.47303 * 60.00189 * 26 24 23 44 44 H 1.09006 * 109.46656 * 180.02562 * 26 24 23 45 45 H 1.09000 * 109.47198 * 299.99784 * 26 24 23 46 46 H 1.09000 * 109.58986 * 353.40630 * 27 18 16 47 47 H 1.08994 * 109.59142 * 113.84262 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3216 -1.1203 -4.0079 9 1 1.8262 -2.5202 -4.0078 10 1 1.8271 -0.4198 -5.2204 11 1 3.8066 -1.1207 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2227 2.3469 14 1 1.2575 0.9330 2.2906 15 6 3.4111 0.9811 2.3224 16 6 1.9786 -0.5675 3.6259 17 8 2.3063 -1.7350 3.6456 18 7 1.5216 0.0233 4.7478 19 6 1.5106 -0.7030 6.0250 20 6 2.2473 0.1348 7.0749 21 1 3.2986 0.2202 6.7998 22 6 2.1299 -0.5417 8.4422 23 6 1.6213 1.5297 7.1395 24 6 1.7675 2.2199 5.7815 25 1 2.8233 2.2857 5.5186 26 6 1.1707 3.6267 5.8566 27 6 1.0305 1.4076 4.7180 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 0.7095 1.1617 -3.4844 32 1 1.4496 -1.4978 1.4101 33 1 3.5261 1.4815 1.3609 34 1 3.4211 1.7223 3.1214 35 1 4.2325 0.2795 2.4674 36 1 0.4810 -0.8656 6.3440 37 1 2.0138 -1.6623 5.9043 38 1 2.5732 -1.5363 8.3949 39 1 2.6538 0.0550 9.1889 40 1 1.0784 -0.6253 8.7170 41 1 0.5642 1.4421 7.3904 42 1 2.1277 2.1200 7.9032 43 1 1.6971 4.2047 6.6161 44 1 1.2747 4.1177 4.8890 45 1 0.1146 3.5599 6.1181 46 1 1.2172 1.8406 3.7353 47 1 -0.0388 1.4207 4.9283 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602866085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:44 Heat of formation + Delta-G solvation = -52.454124 kcal Electronic energy + Delta-G solvation = -23607.823475 eV Core-core repulsion = 20403.714779 eV Total energy + Delta-G solvation = -3204.108697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.36166 -38.04194 -35.94555 -34.06267 -33.54313 -32.78148 -30.41447 -27.18031 -26.94969 -26.91855 -25.77413 -25.11755 -22.87722 -21.03202 -20.49160 -19.85888 -18.67064 -17.21391 -16.44990 -15.75828 -15.32596 -15.02397 -14.84760 -14.66290 -14.51794 -13.89519 -13.36234 -13.22662 -13.01577 -12.71456 -12.66557 -12.34459 -12.27340 -12.08440 -11.96528 -11.80736 -11.60249 -11.47483 -11.30437 -11.06908 -11.01316 -10.88516 -10.77087 -10.71253 -10.55592 -10.45848 -10.10501 -9.92707 -9.23941 -8.95786 -8.56015 -8.33039 -7.23837 -5.96359 -3.98637 2.89596 3.06421 3.38252 3.41099 3.45963 4.37526 4.47029 4.53212 4.58083 4.71019 4.87360 5.05535 5.13582 5.17421 5.27389 5.32019 5.35637 5.36939 5.44674 5.45757 5.57104 5.61980 5.64929 5.70974 5.79576 5.81393 5.85992 5.93797 5.96701 6.02728 6.11542 6.22872 6.33779 6.57507 6.65974 6.69989 6.83286 7.08580 7.29787 7.51598 7.74720 7.91850 8.26864 8.42149 8.55655 8.64081 9.08971 9.66475 11.10961 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029476 B = 0.003823 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.711955 B = 7321.770252 C = 7807.748897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.036 0.964 4 C -0.493 4.493 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.663 5.663 13 C 0.071 3.929 14 H 0.055 0.945 15 C -0.129 4.129 16 C 0.516 3.484 17 O -0.528 6.528 18 N -0.618 5.618 19 C 0.116 3.884 20 C -0.108 4.108 21 H 0.074 0.926 22 C -0.144 4.144 23 C -0.108 4.108 24 C -0.108 4.108 25 H 0.076 0.924 26 C -0.145 4.145 27 C 0.108 3.892 28 H 0.028 0.972 29 H 0.091 0.909 30 H 0.002 0.998 31 H 0.260 0.740 32 H 0.335 0.665 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.092 0.908 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.604 5.277 20.790 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 H 0.054 0.946 4 C -0.531 4.531 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.296 5.296 13 C -0.043 4.043 14 H 0.073 0.927 15 C -0.187 4.187 16 C 0.305 3.695 17 O -0.402 6.402 18 N -0.352 5.352 19 C -0.007 4.007 20 C -0.127 4.127 21 H 0.092 0.908 22 C -0.202 4.202 23 C -0.145 4.145 24 C -0.128 4.128 25 H 0.094 0.906 26 C -0.203 4.203 27 C -0.015 4.015 28 H 0.047 0.953 29 H 0.109 0.891 30 H 0.021 0.979 31 H 0.069 0.931 32 H 0.153 0.847 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.110 0.890 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.160 4.812 20.461 21.020 hybrid contribution -0.790 -0.191 -0.598 1.009 sum -0.630 4.621 19.863 20.403 Atomic orbital electron populations 1.22464 1.00797 0.99335 1.00373 1.19268 0.89464 0.94523 0.86347 0.94575 1.21110 1.30148 1.12465 0.89425 0.91842 1.24934 0.95340 0.95224 0.98993 1.69868 1.37415 1.23237 1.23418 0.86550 0.79211 0.79638 0.81919 1.20357 1.21516 1.20265 1.60784 1.58870 1.08149 1.01812 1.21502 0.98865 0.95004 0.88894 0.92725 1.21687 0.96033 0.98945 1.02077 1.21169 0.75563 0.87678 0.85134 1.90662 1.48183 1.16575 1.84821 1.48155 1.64379 1.14188 1.08499 1.21592 1.00285 0.96244 0.82545 1.21515 1.00540 0.95361 0.95269 0.90780 1.21753 1.01915 1.00637 0.95866 1.21648 1.01054 0.95204 0.96630 1.21451 1.00887 0.95019 0.95408 0.90567 1.21770 1.00909 0.95409 1.02247 1.21804 0.97956 0.81180 1.00577 0.95257 0.89070 0.97868 0.93056 0.84684 0.90729 0.93468 0.91990 0.91954 0.89135 0.92373 0.92437 0.92552 0.91799 0.91746 0.92374 0.92102 0.92496 0.88964 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.92 37.16 0.33 -3.78 16 2 C 0.21 5.34 2.37 -68.86 -0.16 5.17 16 3 H 0.04 0.97 7.10 -51.92 -0.37 0.60 16 4 C -0.49 -13.85 8.84 -34.44 -0.30 -14.16 16 5 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.62 11.32 55.43 0.63 -25.00 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.66 -14.99 5.82 -102.17 -0.59 -15.58 16 13 C 0.07 1.31 1.99 -68.87 -0.14 1.17 16 14 H 0.06 0.97 5.27 -51.92 -0.27 0.70 16 15 C -0.13 -2.18 9.31 37.16 0.35 -1.83 16 16 C 0.52 9.10 6.72 -10.99 -0.07 9.03 16 17 O -0.53 -11.11 15.64 5.56 0.09 -11.02 16 18 N -0.62 -8.42 2.98 -173.03 -0.52 -8.93 16 19 C 0.12 1.37 5.71 -3.71 -0.02 1.34 16 20 C -0.11 -0.99 2.87 -90.50 -0.26 -1.25 16 21 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 22 C -0.14 -1.07 9.20 37.16 0.34 -0.73 16 23 C -0.11 -0.87 4.45 -26.70 -0.12 -0.99 16 24 C -0.11 -0.96 2.86 -90.72 -0.26 -1.22 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 C -0.15 -1.07 9.20 37.16 0.34 -0.73 16 27 C 0.11 1.19 5.49 -3.93 -0.02 1.17 16 28 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 29 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 30 H 0.00 0.05 7.43 -51.93 -0.39 -0.34 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.33 7.75 7.66 -39.29 -0.30 7.44 16 33 H 0.07 1.36 7.38 -51.93 -0.38 0.98 16 34 H 0.05 0.64 7.80 -51.93 -0.41 0.23 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.23 7.03 -51.93 -0.37 0.87 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 1.08 5.12 -51.93 -0.27 0.81 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 360.81 15.07 5.44 5.44 Total: -1.00 -30.51 360.81 -8.60 -39.11 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.53 Total: 4.57 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -0.09 Total: -5.36 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.48 Total: -49.52 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.51 -8.60 -39.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602866085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.341 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds