Wall clock time and date at job start Tue Mar 31 2020 06:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47142 * 2 1 4 4 C 1.50699 * 109.47585 * 240.00292 * 2 1 3 5 5 H 1.08003 * 120.00041 * 240.00526 * 4 2 1 6 6 C 1.37878 * 119.99981 * 59.99254 * 4 2 1 7 7 N 1.31517 * 120.00180 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99706 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47400 * 60.00121 * 8 6 4 10 10 H 1.48503 * 109.46738 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46977 * 300.00157 * 8 6 4 12 12 N 1.46901 * 109.47147 * 119.99549 * 2 1 3 13 13 C 1.46897 * 111.00350 * 275.00199 * 12 2 1 14 14 H 1.09008 * 109.46796 * 34.99973 * 13 12 2 15 15 C 1.53001 * 109.47187 * 275.00328 * 13 12 2 16 16 C 1.50692 * 109.47183 * 154.99924 * 13 12 2 17 17 O 1.21281 * 119.99828 * 24.65426 * 16 13 12 18 18 N 1.34781 * 120.00232 * 204.65008 * 16 13 12 19 19 C 1.46922 * 120.63140 * 184.68304 * 18 16 13 20 20 C 1.53198 * 108.77309 * 126.37259 * 19 18 16 21 21 H 1.09000 * 109.49441 * 294.68668 * 20 19 18 22 22 C 1.53003 * 109.49628 * 174.58977 * 20 19 18 23 23 C 1.53032 * 109.30951 * 54.63433 * 20 19 18 24 24 C 1.53037 * 109.54428 * 298.63502 * 23 20 19 25 25 H 1.08999 * 109.49583 * 301.41724 * 24 23 20 26 26 C 1.53003 * 109.49998 * 181.31897 * 24 23 20 27 27 C 1.46921 * 120.62716 * 4.41414 * 18 16 13 28 28 H 1.09005 * 109.46665 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46792 * 60.00417 * 1 2 3 30 30 H 1.08994 * 109.46954 * 299.99808 * 1 2 3 31 31 H 0.96993 * 119.99612 * 179.97438 * 7 6 4 32 32 H 1.00900 * 110.99880 * 38.95679 * 12 2 1 33 33 H 1.08993 * 109.47210 * 55.01803 * 15 13 12 34 34 H 1.08996 * 109.47161 * 175.02493 * 15 13 12 35 35 H 1.09000 * 109.46693 * 295.01638 * 15 13 12 36 36 H 1.09006 * 109.58953 * 246.16186 * 19 18 16 37 37 H 1.08999 * 109.59010 * 6.58992 * 19 18 16 38 38 H 1.08997 * 109.47637 * 59.99678 * 22 20 19 39 39 H 1.09003 * 109.46592 * 180.02562 * 22 20 19 40 40 H 1.09001 * 109.46730 * 299.99504 * 22 20 19 41 41 H 1.09004 * 109.46333 * 58.65942 * 23 20 19 42 42 H 1.09003 * 109.46279 * 178.61312 * 23 20 19 43 43 H 1.08994 * 109.47303 * 60.00189 * 26 24 23 44 44 H 1.09006 * 109.46656 * 180.02562 * 26 24 23 45 45 H 1.09000 * 109.47198 * 299.99784 * 26 24 23 46 46 H 1.09000 * 109.58986 * 353.40630 * 27 18 16 47 47 H 1.08994 * 109.59142 * 113.84262 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3216 -1.1203 -4.0079 9 1 1.8262 -2.5202 -4.0078 10 1 1.8271 -0.4198 -5.2204 11 1 3.8066 -1.1207 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2227 2.3469 14 1 1.2575 0.9330 2.2906 15 6 3.4111 0.9811 2.3224 16 6 1.9786 -0.5675 3.6259 17 8 2.3063 -1.7350 3.6456 18 7 1.5216 0.0233 4.7478 19 6 1.5106 -0.7030 6.0250 20 6 2.2473 0.1348 7.0749 21 1 3.2986 0.2202 6.7998 22 6 2.1299 -0.5417 8.4422 23 6 1.6213 1.5297 7.1395 24 6 1.7675 2.2199 5.7815 25 1 2.8233 2.2857 5.5186 26 6 1.1707 3.6267 5.8566 27 6 1.0305 1.4076 4.7180 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 0.7095 1.1617 -3.4844 32 1 1.4496 -1.4978 1.4101 33 1 3.5261 1.4815 1.3609 34 1 3.4211 1.7223 3.1214 35 1 4.2325 0.2795 2.4674 36 1 0.4810 -0.8656 6.3440 37 1 2.0138 -1.6623 5.9043 38 1 2.5732 -1.5363 8.3949 39 1 2.6538 0.0550 9.1889 40 1 1.0784 -0.6253 8.7170 41 1 0.5642 1.4421 7.3904 42 1 2.1277 2.1200 7.9032 43 1 1.6971 4.2047 6.6161 44 1 1.2747 4.1177 4.8890 45 1 0.1146 3.5599 6.1181 46 1 1.2172 1.8406 3.7353 47 1 -0.0388 1.4207 4.9283 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602866085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:43 Heat of formation + Delta-G solvation = -71.237328 kcal Electronic energy + Delta-G solvation = -23608.637976 eV Core-core repulsion = 20403.714779 eV Total energy + Delta-G solvation = -3204.923197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.55259 -39.16744 -37.68536 -35.20617 -34.55067 -34.40326 -32.18483 -28.82707 -27.91993 -27.57747 -27.24715 -26.80563 -24.28320 -22.01845 -21.73280 -21.14581 -19.93669 -18.74146 -18.02853 -17.30181 -16.65148 -16.39019 -16.02575 -15.81544 -15.74785 -15.20067 -14.78308 -14.54788 -13.99776 -13.93482 -13.73692 -13.70169 -13.31987 -13.21320 -13.17628 -13.00479 -12.87350 -12.85505 -12.80930 -12.61316 -12.46727 -12.30804 -12.10976 -11.92209 -11.81249 -11.78432 -11.48792 -11.24679 -11.08280 -10.60250 -10.47188 -9.66380 -9.03553 -8.09923 -6.19716 1.43588 1.45140 1.51588 1.53393 1.90963 2.45121 3.18589 3.42759 3.50666 3.69404 3.84922 3.88998 3.93653 4.10711 4.28512 4.29355 4.37656 4.52551 4.62087 4.66146 4.67078 4.72170 4.74139 4.82380 4.84251 4.84990 4.88844 4.89952 5.06437 5.08511 5.09734 5.20848 5.25608 5.30142 5.31610 5.36619 5.40663 5.54260 5.56590 5.68556 5.80369 6.21828 6.31143 6.60431 6.70396 6.91752 7.12358 7.49414 8.95617 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029476 B = 0.003823 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.711955 B = 7321.770252 C = 7807.748897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.219 3.781 3 H 0.018 0.982 4 C -0.519 4.519 5 H 0.048 0.952 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.958 3.042 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.275 1.275 12 N -0.675 5.675 13 C 0.070 3.930 14 H 0.066 0.934 15 C -0.121 4.121 16 C 0.516 3.484 17 O -0.571 6.571 18 N -0.607 5.607 19 C 0.112 3.888 20 C -0.101 4.101 21 H 0.060 0.940 22 C -0.140 4.140 23 C -0.103 4.103 24 C -0.103 4.103 25 H 0.067 0.933 26 C -0.142 4.142 27 C 0.100 3.900 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.262 0.738 32 H 0.329 0.671 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.099 6.465 22.487 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.111 3.889 3 H 0.036 0.964 4 C -0.557 4.557 5 H 0.066 0.934 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.784 3.216 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.200 1.200 12 N -0.306 5.306 13 C -0.043 4.043 14 H 0.084 0.916 15 C -0.179 4.179 16 C 0.304 3.696 17 O -0.450 6.450 18 N -0.340 5.340 19 C -0.010 4.010 20 C -0.120 4.120 21 H 0.078 0.922 22 C -0.198 4.198 23 C -0.141 4.141 24 C -0.123 4.123 25 H 0.086 0.914 26 C -0.199 4.199 27 C -0.022 4.022 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.103 0.897 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.348 6.042 22.200 23.010 hybrid contribution -0.656 -0.523 -1.047 1.341 sum -1.004 5.519 21.154 21.885 Atomic orbital electron populations 1.22267 0.99990 0.98996 1.00402 1.19023 0.89930 0.93223 0.86734 0.96431 1.21372 1.30642 1.12501 0.91200 0.93381 1.25627 0.95402 0.95875 1.01536 1.69967 1.37767 1.23973 1.24112 0.85617 0.78660 0.78618 0.78719 1.20084 1.20573 1.20019 1.60648 1.58590 1.08685 1.02724 1.21562 0.99999 0.94580 0.88189 0.91612 1.21619 0.94718 0.99105 1.02479 1.20937 0.75805 0.87015 0.85838 1.90642 1.50611 1.18221 1.85521 1.48187 1.62529 1.15244 1.08012 1.21780 1.01347 0.95682 0.82234 1.21461 0.99354 0.95991 0.95229 0.92174 1.21727 1.02759 1.00363 0.94910 1.21642 1.01779 0.94184 0.96454 1.21414 1.00117 0.95672 0.95055 0.91421 1.21743 1.01451 0.94194 1.02543 1.22070 0.99170 0.79714 1.01237 0.95677 0.91350 0.95339 0.92861 0.85333 0.92393 0.89879 0.93280 0.90404 0.91497 0.92977 0.91053 0.91555 0.90743 0.90063 0.91185 0.92449 0.91673 0.89717 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.63 8.92 71.98 0.64 -6.99 16 2 C 0.22 11.27 2.37 44.17 0.10 11.38 16 3 H 0.02 0.97 7.10 -2.38 -0.02 0.96 16 4 C -0.52 -29.76 8.84 25.60 0.23 -29.53 16 5 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -52.60 11.32 21.45 0.24 -52.35 16 8 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 9 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 12 N -0.67 -31.20 5.82 -477.15 -2.78 -33.97 16 13 C 0.07 2.58 1.99 44.17 0.09 2.67 16 14 H 0.07 2.30 5.27 -2.38 -0.01 2.29 16 15 C -0.12 -4.08 9.31 71.98 0.67 -3.41 16 16 C 0.52 18.26 6.72 87.65 0.59 18.85 16 17 O -0.57 -24.72 15.64 -3.03 -0.05 -24.77 16 18 N -0.61 -15.94 2.98 -819.74 -2.44 -18.38 16 19 C 0.11 2.50 5.71 86.37 0.49 3.00 16 20 C -0.10 -1.66 2.87 -10.72 -0.03 -1.69 16 21 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 22 C -0.14 -1.75 9.20 71.98 0.66 -1.09 16 23 C -0.10 -1.32 4.45 30.62 0.14 -1.18 16 24 C -0.10 -1.55 2.86 -10.86 -0.03 -1.58 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 C -0.14 -1.63 9.20 71.98 0.66 -0.97 16 27 C 0.10 1.99 5.49 86.22 0.47 2.46 16 28 H 0.02 1.19 8.13 -2.38 -0.02 1.17 16 29 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 30 H 0.03 1.19 7.43 -2.39 -0.02 1.17 16 31 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 32 H 0.33 15.67 7.66 -89.69 -0.69 14.98 16 33 H 0.06 2.14 7.38 -2.39 -0.02 2.12 16 34 H 0.08 2.15 7.80 -2.39 -0.02 2.13 16 35 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.07 1.84 7.03 -2.39 -0.02 1.83 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.08 1.82 5.12 -2.39 -0.01 1.81 16 47 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -66.67 360.81 2.38 -64.29 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.24 Total: 25.09 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 5.13 Total: -6.84 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -4.98 Total: -104.71 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.05 Total: -24.77 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.67 2.38 -64.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602866085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.948 kcal (2) G-P(sol) polarization free energy of solvation -66.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds