Wall clock time and date at job start Tue Mar 31 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46699 * 2 1 4 4 O 1.42892 * 109.47199 * 120.00303 * 2 1 3 5 5 C 1.42899 * 114.00004 * 90.00545 * 4 2 1 6 6 C 1.53780 * 113.61431 * 149.99766 * 5 4 2 7 7 C 1.53787 * 87.08206 * 89.11384 * 6 5 4 8 8 N 1.46896 * 113.61356 * 139.97863 * 7 6 5 9 9 C 1.46960 * 111.00173 * 67.20825 * 8 7 6 10 10 C 1.53051 * 109.36671 * 183.18764 * 9 8 7 11 11 N 1.46954 * 109.36137 * 301.59892 * 10 9 8 12 12 C 1.46903 * 110.99830 * 183.19207 * 11 10 9 13 13 C 1.50705 * 109.47131 * 169.99935 * 12 11 10 14 14 H 1.08000 * 119.99842 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99741 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00227 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99677 * 180.27464 * 15 13 12 18 18 H 1.48501 * 109.47043 * 269.72610 * 17 15 13 19 19 H 1.48498 * 109.47207 * 29.72598 * 17 15 13 20 20 H 1.48499 * 109.47328 * 149.72900 * 17 15 13 21 21 C 1.46951 * 110.88517 * 59.31876 * 11 10 9 22 22 C 1.46961 * 110.99868 * 191.00265 * 8 7 6 23 23 C 1.53780 * 113.61261 * 247.49341 * 5 4 2 24 24 H 1.09000 * 109.47436 * 59.99793 * 1 2 3 25 25 H 1.09005 * 109.46464 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47170 * 299.99091 * 1 2 3 27 27 H 1.08998 * 109.47170 * 240.00909 * 2 1 3 28 28 H 1.08998 * 109.47241 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47346 * 300.00262 * 3 2 1 30 30 H 1.09004 * 109.46711 * 60.00146 * 3 2 1 31 31 H 1.08997 * 112.85179 * 18.79808 * 5 4 2 32 32 H 1.09000 * 113.61819 * 334.56745 * 6 5 4 33 33 H 1.08997 * 113.69036 * 203.67016 * 6 5 4 34 34 H 1.08996 * 113.61391 * 270.79817 * 7 6 5 35 35 H 1.08997 * 109.48993 * 63.21584 * 9 8 7 36 36 H 1.09004 * 109.48656 * 303.15837 * 9 8 7 37 37 H 1.09003 * 109.48773 * 181.63319 * 10 9 8 38 38 H 1.08995 * 109.50523 * 61.57554 * 10 9 8 39 39 H 1.09001 * 109.47197 * 49.99406 * 12 11 10 40 40 H 1.09007 * 109.46733 * 289.99690 * 12 11 10 41 41 H 0.97000 * 120.00408 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.48333 * 60.64906 * 21 11 10 43 43 H 1.08995 * 109.49260 * 180.70852 * 21 11 10 44 44 H 1.08992 * 109.48878 * 296.78120 * 22 8 7 45 45 H 1.09003 * 109.48510 * 56.85002 * 22 8 7 46 46 H 1.09001 * 113.61523 * 156.33077 * 23 5 4 47 47 H 1.09001 * 113.61522 * 25.43223 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 -2.0782 0.9884 6 6 3.3196 -2.6619 1.8665 7 6 2.2466 -2.8926 2.9438 8 7 2.3945 -4.1678 3.6579 9 6 3.6143 -4.1740 4.4775 10 6 3.7732 -5.5442 5.1408 11 7 2.5885 -5.8279 5.9626 12 6 2.7364 -7.1031 6.6769 13 6 1.6280 -7.2438 7.6884 14 1 0.8881 -6.4638 7.7906 15 6 1.5588 -8.3684 8.4831 16 7 2.4601 -9.3179 8.3589 17 14 0.1806 -8.5463 9.7315 18 1 0.6103 -7.9661 11.0292 19 1 -1.0248 -7.8293 9.2436 20 1 -0.1392 -9.9849 9.9141 21 6 1.3687 -5.8217 5.1432 22 6 1.2098 -4.4515 4.4800 23 6 1.2207 -2.9430 1.7993 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3632 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6765 1.9563 0.8901 31 1 2.2733 -2.3656 -0.0604 32 1 4.0758 -1.9310 2.1531 33 1 3.7490 -3.5834 1.4736 34 1 2.1125 -2.0446 3.6152 35 1 3.5402 -3.4045 5.2459 36 1 4.4788 -3.9740 3.8444 37 1 4.6617 -5.5418 5.7721 38 1 3.8749 -6.3107 4.3726 39 1 3.6992 -7.1240 7.1875 40 1 2.6849 -7.9266 5.9646 41 1 2.4112 -10.1092 8.9178 42 1 1.4429 -6.5913 4.3748 43 1 0.5042 -6.0217 5.7762 44 1 1.1083 -3.6852 5.2483 45 1 0.3213 -4.4539 3.8486 46 1 1.0753 -3.9414 1.3868 47 1 0.2825 -2.4391 2.0315 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603017798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:25 Heat of formation + Delta-G solvation = -18.885218 kcal Electronic energy + Delta-G solvation = -22783.492427 eV Core-core repulsion = 19580.839387 eV Total energy + Delta-G solvation = -3202.653040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.04439 -38.34954 -36.63620 -34.00856 -32.46936 -31.85591 -30.40631 -27.81974 -27.53593 -25.82535 -25.20784 -23.13957 -22.64471 -21.73738 -21.35474 -19.52602 -19.13003 -16.83188 -16.29813 -16.27095 -15.47318 -15.14014 -14.69076 -14.55161 -14.29986 -14.15413 -13.81313 -13.62927 -13.35195 -12.88962 -12.71825 -12.52235 -12.44568 -12.33911 -12.00935 -11.84382 -11.73761 -11.56576 -11.15071 -11.01437 -10.87325 -10.77597 -10.66186 -10.50605 -10.48206 -10.15316 -10.08835 -9.64841 -9.60989 -9.13730 -8.40870 -8.06210 -7.17196 -5.99941 -4.01173 3.33183 3.33873 3.39568 3.43279 4.17228 4.44829 4.46923 4.52015 4.68247 4.71901 4.82779 4.87534 4.99426 5.06078 5.15604 5.26641 5.35582 5.40580 5.47497 5.50695 5.54553 5.64640 5.72719 5.75502 5.80103 5.84691 5.88803 5.90354 5.95369 5.97890 6.05473 6.15106 6.23095 6.29682 6.50894 6.66985 6.74796 7.12066 7.25744 7.37719 7.42520 7.44845 7.83661 8.13443 8.25935 8.59792 9.06525 9.62894 11.10971 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037904 B = 0.002889 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.536224 B = 9690.932795 C =10137.825587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.081 3.919 3 C -0.151 4.151 4 O -0.361 6.361 5 C 0.064 3.936 6 C -0.128 4.128 7 C 0.063 3.937 8 N -0.529 5.529 9 C 0.062 3.938 10 C 0.057 3.943 11 N -0.539 5.539 12 C 0.194 3.806 13 C -0.506 4.506 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.274 1.274 20 H -0.287 1.287 21 C 0.068 3.932 22 C 0.059 3.941 23 C -0.144 4.144 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.029 0.971 39 H 0.029 0.971 40 H -0.009 1.009 41 H 0.261 0.739 42 H 0.027 0.973 43 H 0.085 0.915 44 H 0.036 0.964 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 17.430 -18.408 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.023 3.977 3 C -0.208 4.208 4 O -0.280 6.280 5 C 0.006 3.994 6 C -0.166 4.166 7 C -0.046 4.046 8 N -0.254 5.254 9 C -0.066 4.066 10 C -0.072 4.072 11 N -0.265 5.265 12 C 0.069 3.931 13 C -0.545 4.545 14 H 0.080 0.920 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.199 1.199 20 H -0.213 1.213 21 C -0.060 4.060 22 C -0.069 4.069 23 C -0.182 4.182 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.009 0.991 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.103 0.897 44 H 0.055 0.945 45 H 0.087 0.913 46 H 0.114 0.886 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.722 17.341 -18.147 25.111 hybrid contribution -0.763 -0.380 0.581 1.031 sum -1.485 16.962 -17.567 24.464 Atomic orbital electron populations 1.22339 0.96004 1.02544 1.02417 1.22178 0.93720 0.93754 0.88016 1.21874 1.01792 0.94652 1.02463 1.87923 1.85688 1.19084 1.35282 1.23013 0.97312 0.81092 0.98001 1.23264 0.96419 1.00689 0.96203 1.22997 0.96776 0.91104 0.93701 1.62434 1.03286 1.30285 1.29435 1.22096 0.92048 0.97733 0.94734 1.22060 0.94976 0.94904 0.95263 1.62266 1.00490 1.37582 1.26127 1.19698 0.97860 0.83092 0.92492 1.21165 1.11198 1.03532 1.18589 0.91950 1.24993 0.96371 0.95785 0.97516 1.69959 1.35023 1.08716 1.40162 0.86502 0.82272 0.77031 0.81618 1.20671 1.19870 1.21336 1.21981 0.95277 0.93899 0.94884 1.22176 0.92087 0.97974 0.94614 1.23506 0.97622 1.00304 0.96768 0.91891 0.92267 0.91804 0.92229 0.92012 0.91362 0.91789 0.90817 0.91017 0.88241 0.91732 0.94494 0.91286 0.91159 0.95252 0.95280 0.99107 0.92958 0.95432 0.89690 0.94527 0.91319 0.88570 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 9.53 37.16 0.35 -0.94 16 2 C 0.08 0.66 3.33 -26.73 -0.09 0.57 16 3 C -0.15 -1.04 9.56 37.16 0.36 -0.68 16 4 O -0.36 -3.89 9.92 -35.23 -0.35 -4.24 16 5 C 0.06 0.65 4.33 -25.92 -0.11 0.53 16 6 C -0.13 -1.40 6.81 -25.92 -0.18 -1.57 16 7 C 0.06 0.81 3.10 -66.90 -0.21 0.60 16 8 N -0.53 -8.10 4.65 -225.51 -1.05 -9.15 16 9 C 0.06 0.99 5.51 -3.76 -0.02 0.97 16 10 C 0.06 1.08 5.61 -3.77 -0.02 1.06 16 11 N -0.54 -12.12 4.70 -235.91 -1.11 -13.22 16 12 C 0.19 5.18 4.72 -4.97 -0.02 5.16 16 13 C -0.51 -14.45 8.47 -34.44 -0.29 -14.74 16 14 H 0.06 1.76 7.13 -52.49 -0.37 1.39 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 17 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.07 1.39 5.43 -3.77 -0.02 1.37 16 22 C 0.06 0.99 5.54 -3.76 -0.02 0.97 16 23 C -0.14 -1.59 7.02 -25.92 -0.18 -1.78 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.42 7.42 -51.93 -0.39 0.04 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.63 7.45 -51.93 -0.39 0.24 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.95 7.46 -51.93 -0.39 0.57 16 37 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 40 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.08 1.84 6.79 -51.93 -0.35 1.49 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.02 7.62 -51.93 -0.40 0.63 16 46 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -30.47 366.36 -10.84 -41.31 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -9.02 Total: -3.73 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -0.55 Total: -7.02 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -1.42 Total: -48.71 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.35 Total: -4.24 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.47 -10.84 -41.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603017798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.428 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds