Wall clock time and date at job start Tue Mar 31 2020 06:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47166 * 2 1 4 4 O 1.42900 * 109.47304 * 120.00361 * 2 1 3 5 5 C 1.42896 * 114.00133 * 89.99481 * 4 2 1 6 6 C 1.53782 * 113.62023 * 210.00161 * 5 4 2 7 7 C 1.53774 * 87.08155 * 220.02065 * 6 5 4 8 8 N 1.46908 * 113.61310 * 139.97732 * 7 6 5 9 9 C 1.46903 * 110.99774 * 154.99816 * 8 7 6 10 10 C 1.53039 * 109.45957 * 205.00320 * 9 8 7 11 11 C 1.53189 * 109.31376 * 178.63240 * 10 9 8 12 12 N 1.46922 * 108.78036 * 54.63112 * 11 10 9 13 13 C 1.36936 * 120.63291 * 126.36671 * 12 11 10 14 14 H 1.08002 * 120.00172 * 333.39033 * 13 12 11 15 15 C 1.38812 * 120.00088 * 153.38853 * 13 12 11 16 16 N 1.31611 * 120.00091 * 158.91661 * 15 13 12 17 17 Si 1.86798 * 119.99879 * 339.18673 * 15 13 12 18 18 H 1.48503 * 109.47513 * 95.07229 * 17 15 13 19 19 H 1.48502 * 109.47210 * 215.07047 * 17 15 13 20 20 H 1.48503 * 109.47342 * 335.07379 * 17 15 13 21 21 C 1.46931 * 118.73721 * 306.64827 * 12 11 10 22 22 C 1.52759 * 109.00997 * 53.30446 * 21 12 11 23 23 C 1.53783 * 113.61146 * 112.50263 * 5 4 2 24 24 H 1.08993 * 109.47401 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46895 * 299.99747 * 1 2 3 26 26 H 1.08998 * 109.47131 * 59.99302 * 1 2 3 27 27 H 1.08999 * 109.46895 * 240.00253 * 2 1 3 28 28 H 1.08997 * 109.47311 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47665 * 300.00371 * 3 2 1 30 30 H 1.09005 * 109.46598 * 60.00130 * 3 2 1 31 31 H 1.09000 * 112.90832 * 341.25651 * 5 4 2 32 32 H 1.08997 * 113.61503 * 105.46724 * 6 5 4 33 33 H 1.08996 * 113.60799 * 334.56868 * 6 5 4 34 34 H 1.08999 * 113.61610 * 270.79917 * 7 6 5 35 35 H 1.00894 * 110.99874 * 278.95243 * 8 7 6 36 36 H 1.09005 * 109.46292 * 324.97376 * 9 8 7 37 37 H 1.08996 * 109.49649 * 58.67585 * 10 9 8 38 38 H 1.09003 * 109.49537 * 298.57996 * 10 9 8 39 39 H 1.09009 * 109.58476 * 294.84335 * 11 10 9 40 40 H 1.08996 * 109.70235 * 174.49337 * 11 10 9 41 41 H 0.97001 * 120.00195 * 180.02562 * 16 15 13 42 42 H 1.08999 * 109.58572 * 173.14146 * 21 12 11 43 43 H 1.08996 * 109.58363 * 293.56400 * 21 12 11 44 44 H 1.08995 * 109.56777 * 185.54817 * 22 21 12 45 45 H 1.09004 * 109.38889 * 65.51545 * 22 21 12 46 46 H 1.08992 * 113.61602 * 25.43408 * 23 5 4 47 47 H 1.09006 * 113.61187 * 254.52848 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2000 -2.0782 0.9885 6 6 1.9909 -2.8969 2.2734 7 6 3.2022 -3.7393 1.8400 8 7 4.0936 -4.1028 2.9498 9 6 4.8459 -5.3263 2.6417 10 6 5.2549 -6.0153 3.9455 11 6 6.0095 -7.3082 3.6203 12 7 7.1325 -6.9889 2.7285 13 6 8.4074 -7.3748 3.0463 14 1 8.6870 -7.5161 4.0799 15 6 9.3404 -7.5842 2.0401 16 7 10.6266 -7.5435 2.3163 17 14 8.7705 -7.9164 0.2924 18 1 8.7571 -6.6446 -0.4741 19 1 9.6992 -8.8760 -0.3571 20 1 7.4021 -8.4927 0.3190 21 6 6.8627 -6.2423 1.4922 22 6 6.0978 -4.9661 1.8385 23 6 3.6751 -2.5090 1.0478 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6638 -2.4744 0.1262 32 1 1.0544 -3.4542 2.2885 33 1 2.1601 -2.3267 3.1867 34 1 2.9398 -4.5905 1.2117 35 1 4.7169 -3.3425 3.1767 36 1 4.2200 -5.9997 2.0560 37 1 4.3640 -6.2505 4.5277 38 1 5.9011 -5.3518 4.5204 39 1 5.3372 -8.0089 3.1249 40 1 6.3884 -7.7538 4.5400 41 1 11.2785 -7.6895 1.6131 42 1 7.8046 -5.9824 1.0092 43 1 6.2615 -6.8541 0.8197 44 1 5.8069 -4.4545 0.9211 45 1 6.7357 -4.3120 2.4330 46 1 4.3046 -1.8328 1.6260 47 1 4.0981 -2.7534 0.0733 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614645889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:28 Heat of formation + Delta-G solvation = -9.315166 kcal Electronic energy + Delta-G solvation = -22902.398440 eV Core-core repulsion = 19700.160389 eV Total energy + Delta-G solvation = -3202.238051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.90854 -38.25471 -36.96771 -34.19895 -32.47126 -31.59405 -30.34020 -29.20465 -27.56669 -25.78873 -24.82496 -23.18764 -22.64414 -21.66528 -21.33731 -20.23959 -19.06290 -17.33143 -16.86142 -15.88183 -15.53275 -15.16228 -14.91320 -14.61417 -14.10819 -13.93569 -13.70313 -13.38840 -13.35205 -12.89907 -12.74741 -12.60733 -12.51974 -12.49666 -12.25193 -11.99162 -11.80642 -11.70464 -11.32104 -11.06957 -10.89433 -10.83913 -10.81165 -10.68876 -10.44693 -10.14908 -9.91376 -9.71638 -9.55098 -9.45316 -8.64033 -8.12516 -6.95821 -5.93370 -3.27796 3.31871 3.43151 3.48355 3.51353 4.28795 4.47370 4.49592 4.54350 4.60934 4.71108 4.77546 4.86692 4.91469 4.99211 5.11629 5.25280 5.31202 5.37335 5.43206 5.45778 5.49021 5.51794 5.64178 5.70006 5.75255 5.82387 5.87460 5.89180 5.90227 6.00537 6.02876 6.12737 6.22504 6.34349 6.39996 6.50934 6.64779 6.69762 6.72923 6.96561 7.13290 7.31195 7.56018 7.98466 8.34725 8.96682 9.74403 10.12707 11.22791 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027976 B = 0.003301 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.614625 B = 8480.233738 C = 9000.987877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.078 3.922 3 C -0.150 4.150 4 O -0.367 6.367 5 C 0.062 3.938 6 C -0.124 4.124 7 C 0.071 3.929 8 N -0.672 5.672 9 C 0.095 3.905 10 C -0.120 4.120 11 C 0.148 3.852 12 N -0.606 5.606 13 C -0.257 4.257 14 H 0.086 0.914 15 C 0.021 3.979 16 N -0.909 5.909 17 Si 0.882 3.118 18 H -0.291 1.291 19 H -0.304 1.304 20 H -0.270 1.270 21 C 0.131 3.869 22 C -0.160 4.160 23 C -0.183 4.183 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.343 0.657 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.021 0.979 40 H 0.064 0.936 41 H 0.262 0.738 42 H 0.070 0.930 43 H 0.023 0.977 44 H 0.049 0.951 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.177 13.711 -4.777 24.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.286 6.286 5 C 0.004 3.996 6 C -0.162 4.162 7 C -0.040 4.040 8 N -0.301 5.301 9 C -0.015 4.015 10 C -0.160 4.160 11 C 0.022 3.978 12 N -0.330 5.330 13 C -0.385 4.385 14 H 0.103 0.897 15 C -0.177 4.177 16 N -0.553 5.553 17 Si 0.713 3.287 18 H -0.219 1.219 19 H -0.232 1.232 20 H -0.195 1.195 21 C 0.004 3.996 22 C -0.201 4.201 23 C -0.223 4.223 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.162 0.838 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.040 0.960 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.110 0.890 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.454 13.429 -4.269 24.838 hybrid contribution 0.444 0.090 -2.085 2.133 sum -20.010 13.520 -6.354 24.971 Atomic orbital electron populations 1.22322 0.96141 1.02300 1.02446 1.22116 0.93481 0.93906 0.88433 1.21861 1.01898 0.94606 1.02361 1.87998 1.85798 1.19747 1.35042 1.23598 0.96115 0.81120 0.98785 1.23333 0.98350 0.96683 0.97840 1.22755 0.94369 0.95140 0.91708 1.60598 1.24346 1.07272 1.37863 1.21585 0.92661 0.90723 0.96505 1.21987 0.99453 0.98432 0.96105 1.20948 0.89063 0.93403 0.94424 1.44367 1.04384 1.62366 1.21898 1.18948 0.84479 1.41102 0.94010 0.89661 1.25267 0.95062 0.99669 0.97736 1.69844 0.99982 1.52191 1.33242 0.86947 0.78248 0.77355 0.86173 1.21893 1.23205 1.19521 1.21152 0.98183 0.90778 0.89452 1.22661 0.98007 1.00037 0.99398 1.24269 0.97339 0.98983 1.01666 0.92527 0.91788 0.91862 0.92374 0.91967 0.91448 0.91820 0.89869 0.91214 0.88810 0.88682 0.83769 0.91252 0.92116 0.92049 0.96133 0.91763 0.92837 0.91227 0.95958 0.93215 0.91645 0.89041 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 9.53 37.16 0.35 -0.90 16 2 C 0.08 0.67 3.22 -26.73 -0.09 0.58 16 3 C -0.15 -1.12 9.56 37.16 0.36 -0.76 16 4 O -0.37 -4.00 10.00 -35.23 -0.35 -4.36 16 5 C 0.06 0.62 4.13 -25.92 -0.11 0.51 16 6 C -0.12 -1.29 7.71 -25.92 -0.20 -1.49 16 7 C 0.07 0.81 3.98 -66.90 -0.27 0.55 16 8 N -0.67 -8.91 6.37 -98.84 -0.63 -9.53 16 9 C 0.09 1.47 2.42 -67.67 -0.16 1.31 16 10 C -0.12 -2.01 5.69 -26.61 -0.15 -2.16 16 11 C 0.15 2.94 6.52 -3.71 -0.02 2.92 16 12 N -0.61 -14.54 2.78 -172.58 -0.48 -15.02 16 13 C -0.26 -7.27 10.04 -15.06 -0.15 -7.42 16 14 H 0.09 2.57 8.05 -52.49 -0.42 2.14 16 15 C 0.02 0.62 5.23 -17.43 -0.09 0.53 16 16 N -0.91 -28.19 13.97 55.49 0.78 -27.41 16 17 Si 0.88 22.64 24.35 -169.99 -4.14 18.50 16 18 H -0.29 -7.24 6.70 56.52 0.38 -6.86 16 19 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 20 H -0.27 -6.79 6.48 56.52 0.37 -6.43 16 21 C 0.13 2.87 4.17 -3.93 -0.02 2.85 16 22 C -0.16 -2.82 5.32 -26.83 -0.14 -2.96 16 23 C -0.18 -1.99 7.48 -25.92 -0.19 -2.18 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.46 7.73 -51.93 -0.40 0.06 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.73 7.77 -51.93 -0.40 0.32 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.10 1.08 7.48 -51.93 -0.39 0.69 16 35 H 0.34 4.53 7.94 -39.29 -0.31 4.22 16 36 H 0.07 1.09 7.47 -51.93 -0.39 0.70 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.02 0.40 8.14 -51.92 -0.42 -0.03 16 40 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 42 H 0.07 1.69 4.49 -51.93 -0.23 1.46 16 43 H 0.02 0.49 7.01 -51.93 -0.36 0.13 16 44 H 0.05 0.79 8.00 -51.93 -0.42 0.37 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.09 1.06 7.82 -51.93 -0.41 0.66 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 358.59 15.07 5.40 5.40 Total: -1.00 -30.53 358.59 -9.14 -39.67 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.83 Total: 1.37 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -0.88 Total: -8.63 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.33 Total: -51.96 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.35 Total: -4.36 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.14 Total: 18.50 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.53 -9.14 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614645889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.358 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds