Wall clock time and date at job start Tue Mar 31 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.46975 * 2 1 4 4 O 1.21276 * 120.00375 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00181 * 179.97438 * 3 2 1 6 6 C 1.47618 * 118.74417 * 359.97438 * 5 3 2 7 7 C 1.53796 * 111.30301 * 138.34024 * 6 5 3 8 8 C 1.51269 * 109.63021 * 319.95152 * 7 6 5 9 9 N 1.46201 * 109.09934 * 92.41089 * 8 7 6 10 10 C 1.46903 * 110.99875 * 144.77217 * 9 8 7 11 11 C 1.53002 * 109.46774 * 206.93185 * 10 9 8 12 12 H 1.08997 * 109.47303 * 304.13335 * 11 10 9 13 13 C 1.52998 * 109.47036 * 184.13723 * 11 10 9 14 14 C 1.53000 * 109.47468 * 64.13445 * 11 10 9 15 15 C 1.50697 * 109.47272 * 184.99598 * 14 11 10 16 16 H 1.07998 * 119.99840 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99999 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99828 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00047 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47287 * 90.00065 * 19 17 15 21 21 H 1.48509 * 109.46978 * 210.00201 * 19 17 15 22 22 H 1.48507 * 109.46982 * 329.99742 * 19 17 15 23 23 C 1.41441 * 116.34840 * 272.97728 * 9 8 7 24 24 C 1.44880 * 118.75146 * 179.97438 * 5 3 2 25 25 H 1.09001 * 109.47104 * 59.99913 * 1 2 3 26 26 H 1.08998 * 109.47284 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47461 * 299.99930 * 1 2 3 28 28 H 1.08997 * 109.47461 * 240.00070 * 2 1 3 29 29 H 1.09000 * 109.47390 * 119.99621 * 2 1 3 30 30 H 1.09008 * 109.10855 * 258.80621 * 6 5 3 31 31 H 1.08995 * 109.11737 * 17.92668 * 6 5 3 32 32 H 1.09005 * 109.44785 * 80.00575 * 7 6 5 33 33 H 1.09004 * 109.44641 * 199.93656 * 7 6 5 34 34 H 1.09002 * 109.53173 * 332.52884 * 8 7 6 35 35 H 1.08994 * 109.53879 * 212.29929 * 8 7 6 36 36 H 1.09000 * 109.47103 * 86.93274 * 10 9 8 37 37 H 1.08992 * 109.47223 * 326.92843 * 10 9 8 38 38 H 1.09002 * 109.47506 * 54.55570 * 13 11 10 39 39 H 1.08999 * 109.47715 * 174.55818 * 13 11 10 40 40 H 1.09002 * 109.47072 * 294.56191 * 13 11 10 41 41 H 1.09003 * 109.46825 * 64.99514 * 14 11 10 42 42 H 1.08995 * 109.46909 * 305.00270 * 14 11 10 43 43 H 0.97001 * 120.00169 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.39044 * 183.63552 * 23 9 8 45 45 H 1.09007 * 109.38648 * 303.42757 * 23 9 8 46 46 H 1.08997 * 109.43641 * 149.64086 * 24 5 3 47 47 H 1.09007 * 109.39546 * 29.75104 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3573 1.6672 0.0005 6 6 4.2918 0.5245 0.0017 7 6 5.4747 0.7691 -0.9503 8 6 4.9802 1.4376 -2.2140 9 7 5.0843 2.8878 -2.0602 10 6 5.4392 3.5281 -3.3338 11 6 6.1750 4.8407 -3.0569 12 1 5.5579 5.4763 -2.4219 13 6 6.4536 5.5579 -4.3794 14 6 7.4986 4.5439 -2.3490 15 6 8.1655 5.8401 -1.9669 16 1 7.6925 6.7814 -2.2047 17 6 9.3796 5.8243 -1.3136 18 7 9.9558 4.6781 -1.0244 19 14 10.2060 7.4310 -0.8393 20 1 9.7615 7.8342 0.5189 21 1 11.6800 7.2498 -0.8444 22 1 9.8336 8.4862 -1.8157 23 6 3.9811 3.5358 -1.4571 24 6 3.8103 3.0433 -0.0001 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.6720 0.3754 1.0124 31 1 3.7595 -0.3723 -0.3151 32 1 6.2066 1.4125 -0.4619 33 1 5.9404 -0.1836 -1.2028 34 1 3.9398 1.1633 -2.3881 35 1 5.5893 1.1161 -3.0587 36 1 4.5322 3.7330 -3.9026 37 1 6.0852 2.8633 -3.9070 38 1 5.5203 5.6832 -4.9284 39 1 6.8904 6.5359 -4.1774 40 1 7.1485 4.9655 -4.9746 41 1 8.1509 3.9832 -3.0185 42 1 7.3067 3.9556 -1.4518 43 1 10.8102 4.6669 -0.5652 44 1 4.1495 4.6127 -1.4576 45 1 3.0763 3.3108 -2.0217 46 1 4.7659 3.1109 0.5199 47 1 3.0753 3.6666 0.5094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:21 Heat of formation + Delta-G solvation = -43.599185 kcal Electronic energy + Delta-G solvation = -23646.739552 eV Core-core repulsion = 20443.014834 eV Total energy + Delta-G solvation = -3203.724718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.40626 -38.33550 -35.92926 -34.02915 -33.15303 -32.37117 -31.85516 -28.60279 -26.92799 -26.25468 -25.22275 -23.96400 -22.65224 -21.81615 -20.46050 -19.03925 -18.47812 -17.30601 -16.35336 -16.31017 -15.83871 -15.32341 -15.06443 -14.48263 -14.35123 -14.10900 -13.75114 -13.23214 -13.01034 -12.98028 -12.51317 -12.46312 -12.15430 -12.00198 -11.78473 -11.58966 -11.43479 -11.31807 -11.30037 -11.13898 -10.97013 -10.85410 -10.79349 -10.62012 -10.30051 -10.04260 -9.74132 -9.60572 -9.02851 -8.84587 -8.59284 -8.22926 -7.65418 -5.88563 -3.88281 2.61803 3.03779 3.36918 3.43304 3.46402 4.22879 4.42503 4.54467 4.78497 4.85048 4.88642 4.99943 5.20096 5.24099 5.30553 5.47012 5.50462 5.53377 5.58868 5.63185 5.71642 5.76633 5.79484 5.83791 5.90926 6.01946 6.05612 6.06925 6.13123 6.24147 6.31269 6.37135 6.45028 6.56791 6.70638 7.02690 7.07470 7.33788 7.36370 7.62302 7.84238 7.87208 8.08377 8.19424 8.21015 8.58825 9.19512 9.73894 11.22519 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.003958 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.513556 B = 7072.894737 C = 7293.536282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.144 4.144 3 C 0.504 3.496 4 O -0.545 6.545 5 N -0.605 5.605 6 C 0.108 3.892 7 C -0.135 4.135 8 C 0.078 3.922 9 N -0.552 5.552 10 C 0.073 3.927 11 C -0.085 4.085 12 H 0.055 0.945 13 C -0.132 4.132 14 C 0.039 3.961 15 C -0.511 4.511 16 H 0.051 0.949 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.884 3.116 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.069 3.931 24 C 0.115 3.885 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.029 0.971 35 H 0.070 0.930 36 H 0.018 0.982 37 H 0.065 0.935 38 H 0.027 0.973 39 H 0.060 0.940 40 H 0.045 0.955 41 H 0.007 0.993 42 H 0.032 0.968 43 H 0.257 0.743 44 H 0.087 0.913 45 H 0.017 0.983 46 H 0.089 0.911 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.775 -12.286 0.398 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.292 3.708 4 O -0.422 6.422 5 N -0.338 5.338 6 C -0.015 4.015 7 C -0.174 4.174 8 C -0.049 4.049 9 N -0.276 5.276 10 C -0.054 4.054 11 C -0.104 4.104 12 H 0.073 0.927 13 C -0.190 4.190 14 C 0.002 3.998 15 C -0.550 4.550 16 H 0.069 0.931 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.712 3.288 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.061 4.061 24 C -0.008 4.008 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.036 0.964 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.025 0.975 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.035 0.965 46 H 0.107 0.893 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.677 -11.808 0.787 18.086 hybrid contribution 0.140 0.711 -0.214 0.755 sum -13.537 -11.097 0.573 17.513 Atomic orbital electron populations 1.21525 0.93252 1.01317 1.03289 1.21677 0.98413 0.94398 1.03950 1.20833 0.82211 0.91751 0.76007 1.90680 1.55002 1.46632 1.49912 1.47950 1.05706 1.07393 1.72708 1.22057 0.91366 0.87752 1.00280 1.21924 0.97608 1.01538 0.96320 1.21466 0.98687 0.87405 0.97392 1.58080 1.40241 1.02667 1.26608 1.22250 0.97313 0.97516 0.88300 1.21257 0.99692 0.93116 0.96333 0.92699 1.21692 0.98862 1.01421 0.96991 1.19009 0.88935 0.96200 0.95658 1.21336 1.04254 0.93121 1.36285 0.93069 1.24971 0.97459 0.95659 0.96303 1.69969 1.17247 1.24446 1.41925 0.86729 0.78643 0.84549 0.78842 1.20861 1.21446 1.20083 1.21569 0.90604 0.99559 0.94327 1.21640 1.00868 0.81171 0.97151 0.92114 0.92275 0.92045 0.89133 0.89106 0.91604 0.90476 0.89030 0.90479 0.95285 0.91196 0.96390 0.91648 0.95405 0.92089 0.93589 0.97465 0.94977 0.93346 0.89439 0.96509 0.89294 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.20 37.15 0.34 -0.87 16 2 C -0.14 -1.28 4.76 -27.89 -0.13 -1.42 16 3 C 0.50 6.59 7.63 -10.98 -0.08 6.51 16 4 O -0.54 -9.18 15.41 5.56 0.09 -9.09 16 5 N -0.60 -7.63 2.19 -172.47 -0.38 -8.01 16 6 C 0.11 1.07 5.99 -3.02 -0.02 1.05 16 7 C -0.14 -1.58 5.78 -27.19 -0.16 -1.74 16 8 C 0.08 1.05 5.32 -5.08 -0.03 1.02 16 9 N -0.55 -8.95 3.11 -239.51 -0.74 -9.70 16 10 C 0.07 1.25 4.44 -3.82 -0.02 1.24 16 11 C -0.09 -1.72 2.37 -90.62 -0.21 -1.94 16 12 H 0.05 1.15 6.63 -51.93 -0.34 0.80 16 13 C -0.13 -2.49 8.91 37.16 0.33 -2.16 16 14 C 0.04 0.98 4.39 -27.88 -0.12 0.86 16 15 C -0.51 -14.27 8.48 -34.44 -0.29 -14.56 16 16 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 19 Si 0.88 21.80 29.54 -169.99 -5.02 16.78 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 C 0.07 1.10 5.21 -5.76 -0.03 1.07 16 24 C 0.11 1.68 5.51 -3.99 -0.02 1.66 16 25 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 28 H 0.09 0.67 7.41 -51.93 -0.38 0.28 16 29 H 0.09 0.64 8.04 -51.93 -0.42 0.22 16 30 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.08 0.57 5.87 -51.93 -0.30 0.27 16 32 H 0.09 1.34 7.98 -51.93 -0.41 0.93 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.03 0.38 7.32 -51.93 -0.38 0.00 16 35 H 0.07 0.92 7.22 -51.93 -0.38 0.55 16 36 H 0.02 0.29 7.98 -51.93 -0.41 -0.12 16 37 H 0.07 1.11 7.30 -51.93 -0.38 0.73 16 38 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 1.23 7.12 -51.93 -0.37 0.86 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.03 0.87 7.59 -51.93 -0.39 0.47 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.09 1.47 6.42 -51.93 -0.33 1.14 16 45 H 0.02 0.28 8.11 -51.92 -0.42 -0.14 16 46 H 0.09 1.35 8.11 -51.93 -0.42 0.93 16 47 H 0.08 1.27 7.28 -51.93 -0.38 0.90 16 LS Contribution 359.10 15.07 5.41 5.41 Total: -1.00 -31.91 359.10 -9.07 -40.98 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -8.62 Total: -2.57 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -0.54 Total: -7.77 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.39 Total: -43.74 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.91 -9.07 -40.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.622 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds