Wall clock time and date at job start Tue Mar 31 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47063 * 2 1 4 4 O 1.21283 * 119.99651 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00187 * 179.97438 * 3 2 1 6 6 C 1.44672 * 118.54323 * 359.97438 * 5 3 2 7 7 C 1.54947 * 109.52368 * 269.05253 * 6 5 3 8 8 C 1.47544 * 109.73447 * 290.52593 * 7 6 5 9 9 N 1.46271 * 114.37411 * 62.21966 * 8 7 6 10 10 C 1.46896 * 111.00179 * 148.55391 * 9 8 7 11 11 C 1.53004 * 109.47306 * 178.02592 * 10 9 8 12 12 H 1.09000 * 109.46617 * 300.62323 * 11 10 9 13 13 C 1.52995 * 109.46754 * 60.61797 * 11 10 9 14 14 C 1.52991 * 109.47023 * 180.62159 * 11 10 9 15 15 C 1.50703 * 109.46901 * 174.99960 * 14 11 10 16 16 H 1.07995 * 120.00103 * 359.97438 * 15 14 11 17 17 C 1.37885 * 120.00047 * 179.97438 * 15 14 11 18 18 N 1.31515 * 119.99953 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00057 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47101 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47351 * 120.00246 * 19 17 15 22 22 H 1.48502 * 109.47172 * 240.00429 * 19 17 15 23 23 C 1.44762 * 110.63636 * 272.25067 * 9 8 7 24 24 C 1.47775 * 118.54973 * 179.97438 * 5 3 2 25 25 H 1.08997 * 109.47700 * 300.00684 * 1 2 3 26 26 H 1.09002 * 109.46924 * 60.01094 * 1 2 3 27 27 H 1.09007 * 109.46967 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47700 * 239.99316 * 2 1 3 29 29 H 1.09010 * 109.46813 * 119.99182 * 2 1 3 30 30 H 1.09002 * 109.46147 * 149.04330 * 6 5 3 31 31 H 1.08996 * 109.45929 * 29.06546 * 6 5 3 32 32 H 1.08998 * 109.43208 * 170.44596 * 7 6 5 33 33 H 1.08998 * 109.38341 * 50.58086 * 7 6 5 34 34 H 1.08999 * 108.50398 * 300.95014 * 8 7 6 35 35 H 1.08999 * 108.38272 * 183.39208 * 8 7 6 36 36 H 1.09003 * 109.47302 * 58.02222 * 10 9 8 37 37 H 1.09000 * 109.47195 * 298.02581 * 10 9 8 38 38 H 1.08997 * 109.47381 * 60.00388 * 13 11 10 39 39 H 1.09008 * 109.46837 * 179.97438 * 13 11 10 40 40 H 1.08998 * 109.47361 * 300.00164 * 13 11 10 41 41 H 1.09006 * 109.47284 * 294.99704 * 14 11 10 42 42 H 1.09001 * 109.47683 * 54.99748 * 14 11 10 43 43 H 0.96993 * 120.00278 * 179.97438 * 18 17 15 44 44 H 1.09009 * 109.43350 * 214.22646 * 23 9 8 45 45 H 1.08999 * 109.43792 * 334.09018 * 23 9 8 46 46 H 1.09001 * 109.07083 * 258.67295 * 24 5 3 47 47 H 1.09007 * 109.06320 * 17.66795 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.2693 0.5440 0.0016 7 6 4.6137 0.1581 1.4622 8 6 5.4467 1.2118 2.0727 9 7 4.7946 2.5176 2.1677 10 6 5.2677 3.2580 3.3449 11 6 4.6015 4.6348 3.3831 12 1 4.8486 5.1833 2.4742 13 6 3.0841 4.4646 3.4795 14 6 5.1060 5.4118 4.6007 15 6 4.5454 6.8104 4.5717 16 1 3.8947 7.1147 3.7653 17 6 4.8631 7.7015 5.5748 18 7 5.6559 7.3310 6.5566 19 14 4.1677 9.4347 5.5392 20 1 3.3103 9.5995 4.3379 21 1 3.3579 9.6684 6.7617 22 1 5.2825 10.4145 5.4891 23 6 5.0034 3.2815 0.9559 24 6 3.8145 3.0724 -0.0001 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8902 30 1 5.1827 0.8173 -0.5267 31 1 3.8011 -0.3044 -0.4974 32 1 5.1599 -0.7852 1.4689 33 1 3.6924 0.0475 2.0340 34 1 6.3552 1.3211 1.4805 35 1 5.7260 0.8909 3.0763 36 1 6.3494 3.3791 3.2874 37 1 5.0116 2.7053 4.2488 38 1 2.8370 3.9162 4.3884 39 1 2.6095 5.4456 3.5072 40 1 2.7247 3.9111 2.6120 41 1 4.7820 4.9093 5.5122 42 1 6.1948 5.4563 4.5779 43 1 5.8797 7.9579 7.2621 44 1 5.0875 4.3396 1.2042 45 1 5.9216 2.9493 0.4714 46 1 4.1176 3.3479 -1.0102 47 1 2.9909 3.7148 0.3118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:24 Heat of formation + Delta-G solvation = -40.241912 kcal Electronic energy + Delta-G solvation = -23698.738329 eV Core-core repulsion = 20495.159193 eV Total energy + Delta-G solvation = -3203.579135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.34910 -38.48515 -35.99241 -34.10892 -33.27460 -32.48806 -31.68691 -28.78103 -26.87226 -26.12896 -25.21150 -24.39818 -22.72099 -21.78704 -20.56828 -19.02424 -18.44164 -17.26161 -16.58164 -16.35041 -15.85938 -15.33762 -14.84756 -14.59005 -14.38720 -14.20986 -13.68003 -13.55934 -13.23043 -12.68824 -12.64311 -12.49786 -12.22220 -12.15801 -11.79061 -11.56875 -11.52882 -11.39797 -11.31150 -11.22627 -10.85316 -10.81651 -10.72777 -10.70119 -10.23500 -10.17774 -9.69432 -9.51930 -9.11540 -8.91388 -8.53799 -8.31321 -8.01773 -5.96365 -3.97168 2.72405 3.07070 3.33745 3.41434 3.46204 4.05540 4.49684 4.53305 4.66917 4.76548 4.93951 4.97244 5.10565 5.16689 5.18733 5.35831 5.37734 5.40039 5.46441 5.60728 5.66149 5.69856 5.72960 5.80537 5.84093 5.87415 5.92364 6.08368 6.12711 6.17421 6.20592 6.45915 6.54725 6.63940 6.74188 7.04493 7.22102 7.25070 7.42524 7.44386 7.47887 7.70364 7.85658 8.03825 8.30000 8.48026 9.09411 9.66398 11.15243 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023081 B = 0.003956 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.812017 B = 7076.880946 C = 7709.555455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.509 3.491 4 O -0.541 6.541 5 N -0.594 5.594 6 C 0.112 3.888 7 C -0.135 4.135 8 C 0.057 3.943 9 N -0.527 5.527 10 C 0.064 3.936 11 C -0.086 4.086 12 H 0.058 0.942 13 C -0.121 4.121 14 C 0.028 3.972 15 C -0.511 4.511 16 H 0.057 0.943 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.889 3.111 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.033 3.967 24 C 0.121 3.879 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.031 0.969 35 H 0.064 0.936 36 H 0.027 0.973 37 H 0.070 0.930 38 H 0.038 0.962 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.016 0.984 42 H 0.012 0.988 43 H 0.259 0.741 44 H 0.098 0.902 45 H 0.037 0.963 46 H 0.057 0.943 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.735 -18.345 -14.347 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.297 3.703 4 O -0.418 6.418 5 N -0.326 5.326 6 C -0.012 4.012 7 C -0.174 4.174 8 C -0.072 4.072 9 N -0.251 5.251 10 C -0.063 4.063 11 C -0.104 4.104 12 H 0.076 0.924 13 C -0.179 4.179 14 C -0.009 4.009 15 C -0.549 4.549 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.097 4.097 24 C -0.001 4.001 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.068 0.932 44 H 0.116 0.884 45 H 0.055 0.945 46 H 0.076 0.924 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.541 -17.854 -14.133 22.913 hybrid contribution 0.819 1.020 0.162 1.318 sum -1.722 -16.834 -13.971 21.944 Atomic orbital electron populations 1.21532 0.93302 1.01226 1.03400 1.21682 0.98398 0.94432 1.03775 1.20743 0.82157 0.91620 0.75762 1.90690 1.55013 1.46532 1.49602 1.47565 1.05637 1.06610 1.72809 1.21577 0.94103 0.88821 0.96719 1.21468 1.01524 0.97963 0.96448 1.20941 0.94902 0.90680 1.00629 1.60910 1.58717 1.02604 1.02832 1.22366 0.96605 0.95845 0.91487 1.21367 0.95770 0.92469 1.00795 0.92402 1.21567 0.95606 1.00738 0.99941 1.19112 0.95872 0.94306 0.91641 1.21274 1.28795 0.96706 1.08163 0.92500 1.25015 0.95303 0.98591 0.95621 1.69973 1.36320 1.35332 1.12112 0.86582 0.78871 0.84872 0.77986 1.19696 1.21076 1.21141 1.22550 0.95653 1.00772 0.90676 1.21938 0.98601 0.81809 0.97759 0.91866 0.92171 0.92396 0.89448 0.89023 0.90954 0.90482 0.90605 0.90900 0.95081 0.91778 0.95489 0.91177 0.94273 0.92860 0.93722 0.96566 0.96991 0.93182 0.88446 0.94503 0.92432 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.20 37.16 0.34 -0.96 16 2 C -0.14 -1.29 4.89 -27.88 -0.14 -1.43 16 3 C 0.51 6.72 7.63 -10.99 -0.08 6.64 16 4 O -0.54 -9.48 15.26 5.55 0.08 -9.40 16 5 N -0.59 -6.99 2.54 -172.25 -0.44 -7.42 16 6 C 0.11 0.94 5.23 -3.99 -0.02 0.91 16 7 C -0.13 -1.18 5.95 -28.34 -0.17 -1.35 16 8 C 0.06 0.64 4.96 -6.80 -0.03 0.61 16 9 N -0.53 -7.54 3.51 -239.61 -0.84 -8.38 16 10 C 0.06 1.09 4.26 -3.82 -0.02 1.07 16 11 C -0.09 -1.75 2.03 -90.62 -0.18 -1.93 16 12 H 0.06 1.18 5.77 -51.93 -0.30 0.88 16 13 C -0.12 -2.48 8.85 37.16 0.33 -2.15 16 14 C 0.03 0.72 4.45 -27.89 -0.12 0.60 16 15 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 16 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 19 Si 0.89 21.99 29.54 -169.99 -5.02 16.96 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.03 0.44 5.18 -4.46 -0.02 0.42 16 24 C 0.12 1.59 6.45 -2.83 -0.02 1.58 16 25 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 27 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.09 0.58 7.30 -51.93 -0.38 0.20 16 29 H 0.09 0.72 7.27 -51.92 -0.38 0.35 16 30 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.08 0.47 6.18 -51.93 -0.32 0.15 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.74 7.42 -51.93 -0.39 0.35 16 34 H 0.03 0.33 7.18 -51.93 -0.37 -0.04 16 35 H 0.06 0.74 7.64 -51.93 -0.40 0.34 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 1.17 6.95 -51.92 -0.36 0.81 16 40 H 0.04 0.87 7.28 -51.93 -0.38 0.49 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.10 1.47 5.06 -51.92 -0.26 1.21 16 45 H 0.04 0.44 7.14 -51.93 -0.37 0.07 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.09 1.51 6.68 -51.93 -0.35 1.17 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -32.57 355.00 -9.05 -41.62 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -8.40 Total: -3.08 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -0.52 Total: -9.23 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: -0.54 Total: -42.22 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.57 -9.05 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.376 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds