Wall clock time and date at job start Tue Mar 31 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47063 * 2 1 4 4 O 1.21283 * 119.99651 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00187 * 179.97438 * 3 2 1 6 6 C 1.44672 * 118.54323 * 359.97438 * 5 3 2 7 7 C 1.54947 * 109.52368 * 269.05253 * 6 5 3 8 8 C 1.47544 * 109.73447 * 290.52593 * 7 6 5 9 9 N 1.46271 * 114.37411 * 62.21966 * 8 7 6 10 10 C 1.46896 * 111.00179 * 148.55391 * 9 8 7 11 11 C 1.53004 * 109.47306 * 178.02592 * 10 9 8 12 12 H 1.09000 * 109.46617 * 300.62323 * 11 10 9 13 13 C 1.52995 * 109.46754 * 60.61797 * 11 10 9 14 14 C 1.52991 * 109.47023 * 180.62159 * 11 10 9 15 15 C 1.50703 * 109.46901 * 174.99960 * 14 11 10 16 16 H 1.07995 * 120.00103 * 359.97438 * 15 14 11 17 17 C 1.37885 * 120.00047 * 179.97438 * 15 14 11 18 18 N 1.31515 * 119.99953 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00057 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47101 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47351 * 120.00246 * 19 17 15 22 22 H 1.48502 * 109.47172 * 240.00429 * 19 17 15 23 23 C 1.44762 * 110.63636 * 272.25067 * 9 8 7 24 24 C 1.47775 * 118.54973 * 179.97438 * 5 3 2 25 25 H 1.08997 * 109.47700 * 300.00684 * 1 2 3 26 26 H 1.09002 * 109.46924 * 60.01094 * 1 2 3 27 27 H 1.09007 * 109.46967 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47700 * 239.99316 * 2 1 3 29 29 H 1.09010 * 109.46813 * 119.99182 * 2 1 3 30 30 H 1.09002 * 109.46147 * 149.04330 * 6 5 3 31 31 H 1.08996 * 109.45929 * 29.06546 * 6 5 3 32 32 H 1.08998 * 109.43208 * 170.44596 * 7 6 5 33 33 H 1.08998 * 109.38341 * 50.58086 * 7 6 5 34 34 H 1.08999 * 108.50398 * 300.95014 * 8 7 6 35 35 H 1.08999 * 108.38272 * 183.39208 * 8 7 6 36 36 H 1.09003 * 109.47302 * 58.02222 * 10 9 8 37 37 H 1.09000 * 109.47195 * 298.02581 * 10 9 8 38 38 H 1.08997 * 109.47381 * 60.00388 * 13 11 10 39 39 H 1.09008 * 109.46837 * 179.97438 * 13 11 10 40 40 H 1.08998 * 109.47361 * 300.00164 * 13 11 10 41 41 H 1.09006 * 109.47284 * 294.99704 * 14 11 10 42 42 H 1.09001 * 109.47683 * 54.99748 * 14 11 10 43 43 H 0.96993 * 120.00278 * 179.97438 * 18 17 15 44 44 H 1.09009 * 109.43350 * 214.22646 * 23 9 8 45 45 H 1.08999 * 109.43792 * 334.09018 * 23 9 8 46 46 H 1.09001 * 109.07083 * 258.67295 * 24 5 3 47 47 H 1.09007 * 109.06320 * 17.66795 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.2693 0.5440 0.0016 7 6 4.6137 0.1581 1.4622 8 6 5.4467 1.2118 2.0727 9 7 4.7946 2.5176 2.1677 10 6 5.2677 3.2580 3.3449 11 6 4.6015 4.6348 3.3831 12 1 4.8486 5.1833 2.4742 13 6 3.0841 4.4646 3.4795 14 6 5.1060 5.4118 4.6007 15 6 4.5454 6.8104 4.5717 16 1 3.8947 7.1147 3.7653 17 6 4.8631 7.7015 5.5748 18 7 5.6559 7.3310 6.5566 19 14 4.1677 9.4347 5.5392 20 1 3.3103 9.5995 4.3379 21 1 3.3579 9.6684 6.7617 22 1 5.2825 10.4145 5.4891 23 6 5.0034 3.2815 0.9559 24 6 3.8145 3.0724 -0.0001 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8902 30 1 5.1827 0.8173 -0.5267 31 1 3.8011 -0.3044 -0.4974 32 1 5.1599 -0.7852 1.4689 33 1 3.6924 0.0475 2.0340 34 1 6.3552 1.3211 1.4805 35 1 5.7260 0.8909 3.0763 36 1 6.3494 3.3791 3.2874 37 1 5.0116 2.7053 4.2488 38 1 2.8370 3.9162 4.3884 39 1 2.6095 5.4456 3.5072 40 1 2.7247 3.9111 2.6120 41 1 4.7820 4.9093 5.5122 42 1 6.1948 5.4563 4.5779 43 1 5.8797 7.9579 7.2621 44 1 5.0875 4.3396 1.2042 45 1 5.9216 2.9493 0.4714 46 1 4.1176 3.3479 -1.0102 47 1 2.9909 3.7148 0.3118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618887239.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:24 Heat of formation + Delta-G solvation = -60.315588 kcal Electronic energy + Delta-G solvation = -23699.608789 eV Core-core repulsion = 20495.159193 eV Total energy + Delta-G solvation = -3204.449595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32142 -39.65458 -37.30852 -35.62654 -34.24431 -33.97496 -32.95982 -29.99069 -28.80234 -27.17852 -26.49269 -25.47464 -24.46033 -22.72165 -21.67658 -20.39137 -19.56171 -18.61270 -18.08693 -17.44995 -16.95309 -16.64025 -16.21715 -16.02337 -15.73159 -15.38352 -14.68127 -14.61302 -14.25187 -14.22747 -14.10843 -13.71599 -13.53068 -13.30841 -13.04867 -12.86241 -12.80866 -12.66371 -12.61085 -12.41016 -12.35112 -12.22357 -12.06331 -11.94208 -11.71436 -11.61128 -11.39310 -11.04832 -10.88229 -10.63655 -10.54602 -9.47911 -9.15838 -8.19733 -6.28411 1.37328 1.38399 1.51316 1.77007 2.19385 2.40123 2.97168 3.13745 3.72564 3.91503 3.96215 4.08199 4.08981 4.16960 4.24931 4.28174 4.32717 4.44733 4.50600 4.58334 4.68362 4.71787 4.75214 4.82115 4.87142 4.91488 4.97659 5.00327 5.01984 5.05040 5.11123 5.11749 5.25586 5.37786 5.40451 5.42909 5.46544 5.52340 5.73326 5.77267 5.86397 6.16329 6.29555 6.36639 6.57560 6.87135 7.35724 7.39813 8.92471 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023081 B = 0.003956 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.812017 B = 7076.880946 C = 7709.555455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.135 4.135 3 C 0.496 3.504 4 O -0.598 6.598 5 N -0.592 5.592 6 C 0.106 3.894 7 C -0.129 4.129 8 C 0.052 3.948 9 N -0.536 5.536 10 C 0.078 3.922 11 C -0.075 4.075 12 H 0.059 0.941 13 C -0.105 4.105 14 C 0.036 3.964 15 C -0.529 4.529 16 H 0.056 0.944 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.958 3.042 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.277 1.277 23 C 0.038 3.962 24 C 0.125 3.875 25 H 0.036 0.964 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.060 0.940 36 H 0.026 0.974 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.032 0.968 40 H 0.053 0.947 41 H -0.011 1.011 42 H -0.010 1.010 43 H 0.262 0.738 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.270 -20.381 -16.052 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C 0.287 3.713 4 O -0.479 6.479 5 N -0.323 5.323 6 C -0.016 4.016 7 C -0.168 4.168 8 C -0.076 4.076 9 N -0.260 5.260 10 C -0.049 4.049 11 C -0.094 4.094 12 H 0.077 0.923 13 C -0.163 4.163 14 C -0.002 4.002 15 C -0.567 4.567 16 H 0.075 0.925 17 C -0.197 4.197 18 N -0.574 5.574 19 Si 0.783 3.217 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.202 1.202 23 C -0.091 4.091 24 C 0.001 3.999 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.140 0.860 29 H 0.128 0.872 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.007 0.993 42 H 0.008 0.992 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.047 -19.929 -15.854 25.548 hybrid contribution 0.711 1.616 0.690 1.896 sum -1.336 -18.313 -15.164 23.814 Atomic orbital electron populations 1.21535 0.94038 1.02440 1.01451 1.21735 0.97709 0.91762 1.06177 1.21602 0.82167 0.92896 0.74669 1.90667 1.56475 1.48516 1.52271 1.47711 1.05976 1.06815 1.71784 1.21897 0.94307 0.88526 0.96914 1.21459 1.00854 0.98358 0.96115 1.21112 0.95873 0.89426 1.01161 1.60900 1.59355 1.03732 1.02001 1.22027 0.96053 0.93975 0.92880 1.21164 0.95746 0.94169 0.98306 0.92261 1.21389 0.95462 0.99465 0.99941 1.18974 0.94334 0.94085 0.92787 1.21642 1.28802 0.98029 1.08230 0.92541 1.25901 0.95578 1.03017 0.95192 1.70092 1.37516 1.36970 1.12852 0.85495 0.78360 0.79578 0.78233 1.18942 1.20509 1.20216 1.22483 0.96769 0.99418 0.90470 1.21773 0.96998 0.82696 0.98414 0.94489 0.93557 0.89456 0.85971 0.87196 0.89569 0.87184 0.87071 0.92235 0.93717 0.92161 0.95540 0.91865 0.94882 0.94905 0.92803 0.99269 0.99171 0.92886 0.90678 0.92190 0.90613 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.20 71.98 0.66 -1.75 16 2 C -0.13 -2.04 4.89 29.85 0.15 -1.89 16 3 C 0.50 12.53 7.63 87.66 0.67 13.20 16 4 O -0.60 -21.52 15.26 -3.04 -0.05 -21.57 16 5 N -0.59 -12.70 2.54 -817.25 -2.07 -14.77 16 6 C 0.11 1.32 5.23 87.39 0.46 1.77 16 7 C -0.13 -1.75 5.95 29.55 0.18 -1.58 16 8 C 0.05 1.03 4.96 84.72 0.42 1.45 16 9 N -0.54 -14.78 3.51 -912.00 -3.20 -17.99 16 10 C 0.08 2.69 4.26 86.31 0.37 3.06 16 11 C -0.08 -3.18 2.03 -10.80 -0.02 -3.20 16 12 H 0.06 2.50 5.77 -2.39 -0.01 2.49 16 13 C -0.11 -4.46 8.85 71.98 0.64 -3.82 16 14 C 0.04 1.91 4.45 29.85 0.13 2.05 16 15 C -0.53 -30.70 8.41 25.60 0.22 -30.48 16 16 H 0.06 3.21 7.06 -2.91 -0.02 3.19 16 17 C 0.00 0.03 5.46 84.66 0.46 0.49 16 18 N -0.93 -57.68 13.29 21.45 0.28 -57.39 16 19 Si 0.96 45.62 29.54 68.60 2.03 47.65 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 C 0.04 0.97 5.18 87.04 0.45 1.42 16 24 C 0.12 3.18 6.45 86.47 0.56 3.74 16 25 H 0.04 0.83 8.10 -2.39 -0.02 0.81 16 26 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 27 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.12 1.03 7.30 -2.39 -0.02 1.01 16 29 H 0.11 1.31 7.27 -2.38 -0.02 1.30 16 30 H 0.09 0.90 8.10 -2.39 -0.02 0.88 16 31 H 0.11 0.70 6.18 -2.39 -0.01 0.69 16 32 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 1.01 7.42 -2.39 -0.02 0.99 16 34 H 0.04 0.79 7.18 -2.39 -0.02 0.77 16 35 H 0.06 1.26 7.64 -2.39 -0.02 1.24 16 36 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 2.25 8.08 -2.39 -0.02 2.24 16 38 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.03 1.49 6.95 -2.38 -0.02 1.47 16 40 H 0.05 2.17 7.28 -2.39 -0.02 2.15 16 41 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 42 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 43 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 44 H 0.08 2.28 5.06 -2.38 -0.01 2.27 16 45 H 0.06 1.27 7.14 -2.39 -0.02 1.26 16 46 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.06 1.90 6.68 -2.38 -0.02 1.89 16 Total: -1.00 -74.32 355.00 3.24 -71.07 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.92 Total: 8.55 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 5.33 Total: -15.55 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -4.99 Total: -90.15 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.05 Total: -21.57 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -74.32 3.24 -71.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887239.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.758 kcal (2) G-P(sol) polarization free energy of solvation -74.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds