Wall clock time and date at job start Tue Mar 31 2020 06:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47191 * 2 1 4 4 C 1.52999 * 109.47247 * 119.99928 * 2 1 3 5 5 C 1.53002 * 109.46889 * 65.00428 * 4 2 1 6 6 N 1.46893 * 109.47274 * 174.85931 * 5 4 2 7 7 C 1.46900 * 110.99833 * 300.83366 * 6 5 4 8 8 C 1.50703 * 109.47381 * 297.28034 * 7 6 5 9 9 H 1.08006 * 119.99465 * 4.57173 * 8 7 6 10 10 C 1.37874 * 120.00304 * 184.56314 * 8 7 6 11 11 N 1.31515 * 119.99831 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99940 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47125 * 60.00078 * 12 10 8 14 14 H 1.48498 * 109.46979 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46803 * 300.00188 * 12 10 8 16 16 C 1.46897 * 111.00354 * 64.78855 * 6 5 4 17 17 N 1.46497 * 109.47233 * 85.49504 * 16 6 5 18 18 C 1.46761 * 124.35048 * 90.00057 * 17 16 6 19 19 C 1.54486 * 105.47281 * 162.97984 * 18 17 16 20 20 H 1.08993 * 110.97449 * 267.29947 * 19 18 17 21 21 C 1.53003 * 111.00015 * 143.54707 * 19 18 17 22 22 C 1.54629 * 101.76303 * 25.42067 * 19 18 17 23 23 C 1.34743 * 124.29818 * 269.96146 * 17 16 6 24 24 O 1.21289 * 125.12105 * 0.41901 * 23 17 16 25 25 H 1.08997 * 109.47034 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47325 * 300.00082 * 1 2 3 27 27 H 1.09003 * 109.46948 * 59.99817 * 1 2 3 28 28 H 1.08999 * 109.47418 * 240.00449 * 2 1 3 29 29 H 1.09000 * 109.47248 * 179.97438 * 3 2 1 30 30 H 1.08990 * 109.47470 * 300.00292 * 3 2 1 31 31 H 1.09007 * 109.46773 * 60.00194 * 3 2 1 32 32 H 1.08998 * 109.47235 * 305.00998 * 4 2 1 33 33 H 1.09003 * 109.47148 * 184.99797 * 4 2 1 34 34 H 1.08994 * 109.47374 * 54.85398 * 5 4 2 35 35 H 1.09002 * 109.47009 * 294.85659 * 5 4 2 36 36 H 1.08993 * 109.47159 * 57.28114 * 7 6 5 37 37 H 1.08998 * 109.47281 * 177.28411 * 7 6 5 38 38 H 0.97007 * 119.99435 * 179.97438 * 11 10 8 39 39 H 1.09007 * 109.46943 * 325.49296 * 16 6 5 40 40 H 1.09004 * 109.47250 * 205.49672 * 16 6 5 41 41 H 1.09000 * 110.24376 * 43.98705 * 18 17 16 42 42 H 1.08995 * 110.31866 * 282.01970 * 18 17 16 43 43 H 1.09006 * 109.46947 * 306.15302 * 21 19 18 44 44 H 1.09001 * 109.47041 * 66.15144 * 21 19 18 45 45 H 1.08999 * 109.46982 * 186.14901 * 21 19 18 46 46 H 1.08998 * 110.49150 * 93.87461 * 22 19 18 47 47 H 1.09001 * 110.48586 * 216.39138 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1879 6 7 2.2285 -2.9138 2.3236 7 6 3.6937 -2.8095 2.3051 8 6 4.2283 -3.4650 1.0579 9 1 3.5453 -3.8485 0.3143 10 6 5.5892 -3.5750 0.8660 11 7 6.4208 -3.1082 1.7717 12 14 6.2518 -4.3868 -0.6804 13 1 5.7806 -3.6383 -1.8733 14 1 7.7363 -4.3801 -0.6458 15 1 5.7650 -5.7881 -0.7512 16 6 1.6822 -2.4274 3.5975 17 7 0.4351 -3.1357 3.8963 18 6 0.3558 -4.3874 4.6585 19 6 -1.1225 -4.5153 5.0883 20 1 -1.2809 -4.0805 6.0751 21 6 -1.5784 -5.9755 5.0567 22 6 -1.8407 -3.6878 3.9972 23 6 -0.7861 -2.7204 3.5067 24 8 -1.0089 -1.7199 2.8582 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6053 -0.2618 2.1369 33 1 3.1263 -0.6443 1.2951 34 1 1.9927 -2.6319 0.2553 35 1 0.5493 -2.2763 1.2341 36 1 3.9833 -1.7589 2.3161 37 1 4.1046 -3.3089 3.1826 38 1 7.3783 -3.1860 1.6367 39 1 1.4839 -1.3581 3.5232 40 1 2.4030 -2.6087 4.3949 41 1 1.0005 -4.3362 5.5359 42 1 0.6405 -5.2316 4.0305 43 1 -1.3720 -6.3994 4.0738 44 1 -1.0392 -6.5409 5.8167 45 1 -2.6486 -6.0264 5.2570 46 1 -2.1729 -4.3341 3.1848 47 1 -2.6859 -3.1469 4.4231 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733299808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:57 Heat of formation + Delta-G solvation = -46.422651 kcal Electronic energy + Delta-G solvation = -23791.476959 eV Core-core repulsion = 20587.629807 eV Total energy + Delta-G solvation = -3203.847152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.17967 -37.58283 -36.37737 -35.04346 -33.09405 -32.12100 -28.72911 -28.22364 -27.19944 -26.69791 -25.77830 -24.15872 -23.02012 -20.74788 -20.23792 -19.62504 -18.67720 -16.61411 -16.35090 -15.86056 -15.34533 -15.01715 -14.68267 -14.29982 -14.13583 -13.82679 -13.64599 -13.24047 -13.09035 -12.77241 -12.61579 -12.42477 -12.37713 -12.13341 -11.83061 -11.69625 -11.50699 -11.19946 -11.07740 -10.95452 -10.84630 -10.75373 -10.70815 -10.56842 -10.23017 -10.14727 -9.88187 -9.61575 -9.45614 -9.21771 -8.50809 -8.35089 -7.19596 -6.03697 -4.04163 2.89336 3.33099 3.36700 3.37031 3.41240 4.42092 4.43002 4.49919 4.69626 5.06406 5.07593 5.32498 5.33158 5.34819 5.43564 5.47103 5.49337 5.58085 5.59765 5.71188 5.79286 5.87349 5.90554 5.94378 5.98443 5.99678 6.17449 6.17630 6.20367 6.30659 6.37034 6.42884 6.56843 6.72608 6.73568 6.82810 6.92770 7.07560 7.28922 7.41249 7.50327 7.78403 8.05767 8.21546 8.47348 8.58765 9.02103 9.59667 11.07038 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012361 B = 0.005962 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.645876 B = 4695.568013 C = 6348.682700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 C -0.143 4.143 4 C -0.146 4.146 5 C 0.068 3.932 6 N -0.549 5.549 7 C 0.195 3.805 8 C -0.503 4.503 9 H 0.061 0.939 10 C 0.057 3.943 11 N -0.899 5.899 12 Si 0.896 3.104 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.281 3.719 17 N -0.602 5.602 18 C 0.110 3.890 19 C -0.105 4.105 20 H 0.086 0.914 21 C -0.141 4.141 22 C -0.152 4.152 23 C 0.514 3.486 24 O -0.533 6.533 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.063 0.937 36 H -0.002 1.002 37 H 0.030 0.970 38 H 0.261 0.739 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.100 0.900 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.055 -0.500 5.797 15.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 C -0.201 4.201 4 C -0.185 4.185 5 C -0.060 4.060 6 N -0.274 5.274 7 C 0.070 3.930 8 C -0.542 4.542 9 H 0.079 0.921 10 C -0.144 4.144 11 N -0.538 5.538 12 Si 0.724 3.276 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.203 1.203 16 C 0.069 3.931 17 N -0.336 5.336 18 C -0.014 4.014 19 C -0.124 4.124 20 H 0.105 0.895 21 C -0.198 4.198 22 C -0.192 4.192 23 C 0.301 3.699 24 O -0.410 6.410 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.016 0.984 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.119 0.881 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.989 -0.419 5.449 15.019 hybrid contribution 0.830 0.278 -0.705 1.124 sum -13.159 -0.140 4.745 13.989 Atomic orbital electron populations 1.21785 0.95453 1.01785 1.00485 1.21004 0.95477 0.95551 0.98905 1.21821 1.00972 0.96565 1.00733 1.22200 1.01927 0.97608 0.96751 1.22090 0.98175 0.90549 0.95171 1.62045 1.09734 1.55018 1.00578 1.19746 0.79358 0.95709 0.98231 1.21069 0.91127 1.37651 1.04311 0.92081 1.24942 0.96940 0.95804 0.96718 1.69941 1.02752 1.46678 1.34478 0.86597 0.77563 0.80008 0.83466 1.20282 1.21381 1.20258 1.21860 0.83954 0.93396 0.93855 1.48574 1.06753 1.24738 1.53552 1.22114 0.95980 0.87462 0.95849 1.22147 0.94644 0.96753 0.98844 0.89545 1.21756 1.01188 0.94278 1.02601 1.22439 0.98331 0.98513 0.99935 1.20879 0.84518 0.85583 0.78899 1.90702 1.83662 1.27011 1.39669 0.92535 0.92930 0.94050 0.91522 0.92785 0.93457 0.93275 0.93118 0.90706 0.90776 0.91916 0.98433 0.95172 0.92910 0.92168 0.90134 0.90807 0.90651 0.91994 0.92050 0.92218 0.88135 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.95 37.16 0.33 -1.87 16 2 C -0.09 -1.54 2.92 -90.62 -0.26 -1.80 16 3 C -0.14 -2.18 9.19 37.16 0.34 -1.84 16 4 C -0.15 -2.83 4.10 -26.73 -0.11 -2.94 16 5 C 0.07 1.41 4.70 -3.83 -0.02 1.39 16 6 N -0.55 -11.75 4.83 -239.99 -1.16 -12.91 16 7 C 0.19 4.88 4.32 -4.97 -0.02 4.86 16 8 C -0.50 -13.82 8.60 -34.44 -0.30 -14.11 16 9 H 0.06 1.69 6.69 -52.48 -0.35 1.34 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 12 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 C 0.28 5.15 5.67 -63.32 -0.36 4.79 16 17 N -0.60 -9.47 3.18 -175.81 -0.56 -10.03 16 18 C 0.11 1.33 6.92 -3.12 -0.02 1.31 16 19 C -0.10 -0.97 3.75 -88.98 -0.33 -1.30 16 20 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 21 C -0.14 -1.05 9.13 37.16 0.34 -0.71 16 22 C -0.15 -1.68 6.41 -26.74 -0.17 -1.85 16 23 C 0.51 8.17 7.54 -10.71 -0.08 8.09 16 24 O -0.53 -10.21 16.18 5.55 0.09 -10.13 16 25 H 0.06 0.96 6.68 -51.93 -0.35 0.61 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.98 6.37 -51.93 -0.33 0.65 16 33 H 0.07 1.64 6.06 -51.93 -0.31 1.32 16 34 H 0.07 1.66 6.58 -51.93 -0.34 1.32 16 35 H 0.06 1.29 4.72 -51.93 -0.25 1.05 16 36 H 0.00 -0.05 6.03 -51.93 -0.31 -0.37 16 37 H 0.03 0.81 7.88 -51.93 -0.41 0.40 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.06 1.15 5.62 -51.93 -0.29 0.86 16 40 H 0.08 1.42 7.62 -51.93 -0.40 1.02 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.98 7.84 -51.93 -0.41 0.58 16 43 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.10 1.05 7.90 -51.93 -0.41 0.64 16 47 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 361.93 15.07 5.45 5.45 Total: -1.00 -30.48 361.93 -9.58 -40.06 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -8.36 Total: 0.95 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -0.76 Total: -4.50 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -0.98 Total: -48.38 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.48 -9.58 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733299808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.361 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds