Wall clock time and date at job start Tue Mar 31 2020 06:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47119 * 2 1 4 4 C 1.53008 * 109.47060 * 119.99719 * 2 1 3 5 5 C 1.52998 * 109.46965 * 174.99996 * 4 2 1 6 6 N 1.46903 * 109.47205 * 185.27048 * 5 4 2 7 7 C 1.46898 * 111.00333 * 165.07508 * 6 5 4 8 8 C 1.50700 * 109.47080 * 293.95388 * 7 6 5 9 9 H 1.08003 * 119.99675 * 359.97438 * 8 7 6 10 10 C 1.37870 * 120.00094 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00179 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99918 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46712 * 90.00574 * 12 10 8 14 14 H 1.48497 * 109.47107 * 210.00054 * 12 10 8 15 15 H 1.48491 * 109.47278 * 330.00685 * 12 10 8 16 16 C 1.46903 * 110.99598 * 289.02938 * 6 5 4 17 17 N 1.46507 * 109.47021 * 151.36255 * 16 6 5 18 18 C 1.46756 * 124.35172 * 279.75975 * 17 16 6 19 19 C 1.54295 * 105.56695 * 196.88596 * 18 17 16 20 20 H 1.09003 * 110.75143 * 92.99472 * 19 18 17 21 21 C 1.52998 * 111.15238 * 216.69471 * 19 18 17 22 22 C 1.54629 * 101.84343 * 334.93454 * 19 18 17 23 23 C 1.34419 * 124.34579 * 100.05770 * 17 16 6 24 24 O 1.21280 * 124.94414 * 359.60672 * 23 17 16 25 25 H 1.08998 * 109.47310 * 300.00020 * 1 2 3 26 26 H 1.08999 * 109.46647 * 60.00102 * 1 2 3 27 27 H 1.09006 * 109.46607 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47310 * 239.99980 * 2 1 3 29 29 H 1.09007 * 109.47158 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47334 * 300.00066 * 3 2 1 31 31 H 1.09005 * 109.47456 * 60.00344 * 3 2 1 32 32 H 1.09001 * 109.46920 * 55.00257 * 4 2 1 33 33 H 1.08992 * 109.47032 * 295.00240 * 4 2 1 34 34 H 1.09001 * 109.47394 * 65.26636 * 5 4 2 35 35 H 1.09004 * 109.47681 * 305.26951 * 5 4 2 36 36 H 1.09000 * 109.46955 * 173.95563 * 7 6 5 37 37 H 1.08999 * 109.46752 * 53.95277 * 7 6 5 38 38 H 0.97003 * 120.00648 * 179.97438 * 11 10 8 39 39 H 1.08995 * 109.46686 * 271.36176 * 16 6 5 40 40 H 1.09001 * 109.47189 * 31.36202 * 16 6 5 41 41 H 1.09001 * 110.24378 * 316.01431 * 18 17 16 42 42 H 1.08999 * 110.24650 * 78.00682 * 18 17 16 43 43 H 1.08997 * 109.47040 * 174.03429 * 21 19 18 44 44 H 1.09004 * 109.46944 * 294.02731 * 21 19 18 45 45 H 1.08996 * 109.46939 * 54.03053 * 21 19 18 46 46 H 1.09001 * 110.48929 * 265.90630 * 22 19 18 47 47 H 1.08999 * 110.49069 * 143.25678 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 7 4.0441 -1.6323 2.3222 7 6 5.4348 -2.0579 2.1158 8 6 5.5007 -3.0110 0.9503 9 1 4.5995 -3.2745 0.4166 10 6 6.7113 -3.5473 0.5660 11 7 6.7688 -4.3794 -0.4508 12 14 8.2699 -3.0921 1.4896 13 1 8.4817 -4.0495 2.6049 14 1 9.4287 -3.1478 0.5626 15 1 8.1382 -1.7175 2.0355 16 6 3.9009 -0.8955 3.5850 17 7 3.7153 -1.8444 4.6857 18 6 2.4400 -2.4918 5.0147 19 6 2.6092 -3.0349 6.4490 20 1 2.2519 -2.3105 7.1809 21 6 1.8958 -4.3777 6.6186 22 6 4.1429 -3.2073 6.5442 23 6 4.6899 -2.2295 5.5275 24 8 5.8402 -1.8485 5.4792 25 1 -0.3634 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -1.7198 1.2953 33 1 1.7516 -0.1583 2.1370 34 1 4.0032 0.1658 1.2364 35 1 3.8574 -1.3115 0.2544 36 1 5.7993 -2.5566 3.0139 37 1 6.0545 -1.1858 1.9075 38 1 7.6205 -4.7565 -0.7215 39 1 4.7981 -0.3029 3.7636 40 1 3.0356 -0.2354 3.5245 41 1 1.6279 -1.7656 4.9785 42 1 2.2442 -3.3122 4.3242 43 1 2.1199 -4.7863 7.6039 44 1 0.8199 -4.2323 6.5218 45 1 2.2393 -5.0711 5.8510 46 1 4.4291 -4.2267 6.2854 47 1 4.4940 -2.9537 7.5445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733299817.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:00 Heat of formation + Delta-G solvation = -46.198598 kcal Electronic energy + Delta-G solvation = -23593.668082 eV Core-core repulsion = 20389.830645 eV Total energy + Delta-G solvation = -3203.837437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.17156 -37.57750 -36.34434 -35.46878 -32.99665 -32.17435 -29.16474 -28.67416 -27.36613 -27.04436 -25.92854 -24.11584 -22.46759 -20.76754 -20.17385 -19.70345 -19.06727 -17.00345 -16.37594 -16.23777 -15.22534 -15.06945 -14.84549 -14.35864 -13.96735 -13.88721 -13.74479 -13.27505 -13.22814 -12.93803 -12.68229 -12.52118 -12.36860 -12.29757 -12.20925 -12.09847 -11.62823 -11.51031 -11.34270 -10.94725 -10.88795 -10.84453 -10.73332 -10.55499 -10.43876 -10.20059 -9.96093 -9.81814 -9.43647 -9.24375 -8.54280 -8.43312 -7.43996 -6.01642 -3.98579 2.93832 3.35723 3.37361 3.43611 3.52766 4.44740 4.49421 4.52994 4.70580 4.73504 5.05870 5.11160 5.14485 5.20860 5.31967 5.36057 5.42277 5.49414 5.61590 5.63457 5.68195 5.71022 5.77184 5.81479 5.88036 5.90261 5.92474 5.97177 5.98615 6.03028 6.11725 6.20655 6.22998 6.37962 6.48271 6.62738 6.73312 6.80198 6.99801 7.07712 7.45951 7.66119 7.89640 8.04365 8.56348 8.67071 9.05246 9.61510 11.10955 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.008375 B = 0.008098 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3342.662625 B = 3456.866957 C = 5899.722163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.108 4.108 5 C 0.065 3.935 6 N -0.541 5.541 7 C 0.165 3.835 8 C -0.508 4.508 9 H 0.080 0.920 10 C 0.071 3.929 11 N -0.901 5.901 12 Si 0.871 3.129 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.266 1.266 16 C 0.284 3.716 17 N -0.601 5.601 18 C 0.113 3.887 19 C -0.105 4.105 20 H 0.085 0.915 21 C -0.141 4.141 22 C -0.151 4.151 23 C 0.516 3.484 24 O -0.536 6.536 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.023 0.977 35 H 0.094 0.906 36 H 0.029 0.971 37 H -0.013 1.013 38 H 0.263 0.737 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.104 0.896 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.175 6.657 10.323 18.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.146 4.146 5 C -0.063 4.063 6 N -0.267 5.267 7 C 0.039 3.961 8 C -0.546 4.546 9 H 0.098 0.902 10 C -0.131 4.131 11 N -0.540 5.540 12 Si 0.699 3.301 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.191 1.191 16 C 0.072 3.928 17 N -0.336 5.336 18 C -0.011 4.011 19 C -0.124 4.124 20 H 0.104 0.896 21 C -0.198 4.198 22 C -0.191 4.191 23 C 0.303 3.697 24 O -0.412 6.412 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.112 0.888 36 H 0.047 0.953 37 H 0.005 0.995 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.122 0.878 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.705 6.397 10.149 18.214 hybrid contribution 1.408 0.751 0.312 1.626 sum -12.297 7.148 10.461 17.656 Atomic orbital electron populations 1.21815 0.95692 1.01515 1.01058 1.21109 0.95164 0.96189 0.99242 1.21884 1.01546 0.96130 1.00934 1.21673 0.96173 1.00416 0.96299 1.22046 0.93459 0.94909 0.95879 1.61688 1.25080 1.39546 1.00395 1.20190 0.83020 0.95006 0.97861 1.21010 0.95387 1.25261 1.12927 0.90163 1.24847 0.98685 0.94700 0.94834 1.69892 1.25863 1.31235 1.27043 0.86911 0.83363 0.79998 0.79876 1.20147 1.21294 1.19115 1.21775 1.00457 0.87312 0.83247 1.48310 1.10393 1.45130 1.29755 1.22037 0.86107 0.97737 0.95192 1.22109 0.94671 0.98622 0.96964 0.89619 1.21756 1.00230 0.95583 1.02273 1.22444 0.95806 1.00934 0.99950 1.20843 0.84984 0.81177 0.82683 1.90724 1.17698 1.58698 1.74112 0.93157 0.93155 0.92732 0.90855 0.92272 0.93236 0.93219 0.91216 0.93179 0.95912 0.88781 0.95316 0.99486 0.92742 0.92527 0.90359 0.91035 0.90484 0.92165 0.92130 0.91800 0.87774 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.19 37.16 0.34 -1.17 16 2 C -0.10 -1.23 2.92 -90.62 -0.26 -1.49 16 3 C -0.15 -1.71 8.95 37.16 0.33 -1.38 16 4 C -0.11 -1.54 4.66 -26.73 -0.12 -1.66 16 5 C 0.07 1.19 4.39 -3.82 -0.02 1.17 16 6 N -0.54 -11.18 4.56 -239.97 -1.09 -12.28 16 7 C 0.17 4.23 3.62 -4.98 -0.02 4.21 16 8 C -0.51 -14.72 8.85 -34.44 -0.30 -15.03 16 9 H 0.08 2.48 7.49 -52.48 -0.39 2.09 16 10 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 11 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 12 Si 0.87 23.18 27.47 -169.99 -4.67 18.51 16 13 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 15 H -0.27 -7.08 6.54 56.52 0.37 -6.71 16 16 C 0.28 5.01 5.66 -63.30 -0.36 4.65 16 17 N -0.60 -9.92 3.17 -176.02 -0.56 -10.48 16 18 C 0.11 1.38 6.92 -3.22 -0.02 1.35 16 19 C -0.10 -1.03 3.73 -89.09 -0.33 -1.36 16 20 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 21 C -0.14 -1.14 9.13 37.16 0.34 -0.81 16 22 C -0.15 -1.92 6.42 -26.74 -0.17 -2.09 16 23 C 0.52 9.33 7.55 -10.86 -0.08 9.24 16 24 O -0.54 -12.18 16.91 5.56 0.09 -12.09 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.75 6.68 -51.93 -0.35 0.40 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.65 6.66 -51.93 -0.35 0.30 16 34 H 0.02 0.40 6.75 -51.93 -0.35 0.05 16 35 H 0.09 1.99 6.59 -51.93 -0.34 1.65 16 36 H 0.03 0.80 6.43 -51.93 -0.33 0.46 16 37 H -0.01 -0.33 7.18 -51.93 -0.37 -0.71 16 38 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 39 H 0.06 1.11 7.45 -51.93 -0.39 0.73 16 40 H 0.08 1.14 6.20 -51.93 -0.32 0.82 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.03 7.84 -51.93 -0.41 0.62 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 46 H 0.10 1.32 7.90 -51.93 -0.41 0.91 16 47 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 365.55 15.07 5.51 5.51 Total: -1.00 -34.02 365.55 -9.40 -43.42 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -8.67 Total: -2.90 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -0.78 Total: -2.34 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.88 Total: -50.11 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.67 Total: 18.51 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.02 -9.40 -43.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733299817.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.779 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds