Wall clock time and date at job start Tue Mar 31 2020 06:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.85617 * 2 1 4 4 C 1.54632 * 110.97001 * 236.21119 * 2 1 3 5 5 C 1.51287 * 104.19303 * 217.04594 * 4 2 1 6 6 O 1.21276 * 124.93731 * 196.21877 * 5 4 2 7 7 N 1.34411 * 110.11721 * 16.25326 * 5 4 2 8 8 C 1.46496 * 124.35070 * 180.43040 * 7 5 4 9 9 N 1.46898 * 109.47492 * 90.02288 * 8 7 5 10 10 C 1.46906 * 111.00260 * 200.42155 * 9 8 7 11 11 C 1.50700 * 109.47008 * 163.53625 * 10 9 8 12 12 H 1.07999 * 119.99912 * 2.22145 * 11 10 9 13 13 C 1.37877 * 119.99787 * 182.23383 * 11 10 9 14 14 N 1.31516 * 119.99737 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00213 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47374 * 89.98977 * 15 13 11 17 17 H 1.48500 * 109.47311 * 209.99685 * 15 13 11 18 18 H 1.48507 * 109.46686 * 329.99537 * 15 13 11 19 19 C 1.46898 * 111.00224 * 76.46465 * 9 8 7 20 20 C 1.52998 * 109.47149 * 89.88526 * 19 9 8 21 21 C 1.53001 * 109.47148 * 75.29552 * 20 19 9 22 22 C 1.52994 * 109.47513 * 195.29781 * 20 19 9 23 23 C 1.53000 * 109.47225 * 315.29963 * 20 19 9 24 24 C 1.46764 * 111.30253 * 0.40779 * 7 5 4 25 25 H 1.09006 * 109.47162 * 179.30186 * 1 2 3 26 26 H 1.08998 * 109.47038 * 299.29730 * 1 2 3 27 27 H 1.09000 * 109.46924 * 59.30023 * 1 2 3 28 28 H 1.08991 * 110.48145 * 335.72293 * 4 2 1 29 29 H 1.08995 * 110.48387 * 98.23862 * 4 2 1 30 30 H 1.09000 * 109.47330 * 210.02743 * 8 7 5 31 31 H 1.09002 * 109.46822 * 330.02367 * 8 7 5 32 32 H 1.08994 * 109.47034 * 283.53471 * 10 9 8 33 33 H 1.08999 * 109.46473 * 43.53272 * 10 9 8 34 34 H 0.97004 * 119.99306 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.47776 * 209.88696 * 19 9 8 36 36 H 1.09007 * 109.46898 * 329.88937 * 19 9 8 37 37 H 1.08997 * 109.46871 * 14.87149 * 21 20 19 38 38 H 1.09005 * 109.47082 * 134.86456 * 21 20 19 39 39 H 1.09003 * 109.47316 * 254.86968 * 21 20 19 40 40 H 1.09005 * 109.46986 * 59.99882 * 22 20 19 41 41 H 1.09000 * 109.47417 * 180.02562 * 22 20 19 42 42 H 1.09000 * 109.47179 * 300.00269 * 22 20 19 43 43 H 1.09004 * 109.47409 * 85.16099 * 23 20 19 44 44 H 1.09003 * 109.47605 * 205.16128 * 23 20 19 45 45 H 1.09000 * 109.46973 * 325.16454 * 23 20 19 46 46 H 1.09005 * 110.24806 * 223.98279 * 24 7 5 47 47 H 1.08995 * 110.24716 * 101.98782 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0834 -0.8030 -1.2000 5 6 3.3093 -1.4970 -0.6483 6 8 4.1850 -1.9987 -1.3207 7 7 3.2862 -1.4773 0.6955 8 6 4.3277 -2.0546 1.5487 9 7 5.3509 -1.0383 1.8282 10 6 6.6129 -1.6630 2.2469 11 6 7.7316 -0.6595 2.1346 12 1 7.5200 0.3522 1.8214 13 6 9.0251 -1.0330 2.4316 14 7 9.2826 -2.2650 2.8132 15 14 10.4117 0.2109 2.2931 16 1 10.5797 0.9116 3.5916 17 1 11.6728 -0.4904 1.9423 18 1 10.0849 1.2007 1.2353 19 6 4.8787 -0.0791 2.8356 20 6 5.2533 -0.5800 4.2319 21 6 6.7489 -0.3603 4.4683 22 6 4.4522 0.1916 5.2825 23 6 4.9335 -2.0722 4.3412 24 6 2.0837 -0.8026 1.1982 25 1 -0.3634 -1.0276 -0.0125 26 1 -0.3633 0.5029 0.8962 27 1 -0.3633 0.5247 -0.8837 28 1 1.3508 -1.5352 -1.5393 29 1 2.3565 -0.1321 -2.0145 30 1 3.8845 -2.3914 2.4858 31 1 4.7868 -2.9017 1.0389 32 1 6.5273 -1.9975 3.2807 33 1 6.8256 -2.5177 1.6049 34 1 10.1926 -2.5276 3.0225 35 1 5.3445 0.8907 2.6604 36 1 3.7955 0.0198 2.7635 37 1 7.1386 0.3261 3.7166 38 1 6.9015 0.0633 5.4610 39 1 7.2721 -1.3138 4.3957 40 1 3.3867 0.0351 5.1140 41 1 4.7194 -0.1650 6.2772 42 1 4.6800 1.2547 5.2046 43 1 5.7700 -2.6526 3.9518 44 1 4.7662 -2.3323 5.3864 45 1 4.0366 -2.2948 3.7633 46 1 2.3426 -0.1296 2.0157 47 1 1.3505 -1.5371 1.5314 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733300296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:03 Heat of formation + Delta-G solvation = 23.013635 kcal Electronic energy + Delta-G solvation = -24544.956398 eV Core-core repulsion = 21344.120229 eV Total energy + Delta-G solvation = -3200.836169 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34604 -39.02074 -36.32343 -34.12364 -32.99833 -31.84894 -28.75971 -27.94109 -27.54411 -26.62344 -25.74476 -24.66066 -23.52019 -20.79272 -20.60042 -19.13797 -18.24501 -16.66958 -16.50761 -15.99274 -15.40845 -14.90173 -14.55427 -14.19457 -14.12846 -13.96357 -13.50394 -13.48433 -13.07703 -12.97024 -12.59325 -12.36500 -12.23057 -11.70748 -11.58383 -11.39054 -11.24865 -11.14030 -10.97934 -10.94964 -10.86760 -10.77767 -10.57193 -10.40857 -10.16098 -9.82821 -9.58111 -9.42893 -9.23684 -9.02906 -8.38261 -8.25822 -6.96680 -5.96430 -3.86303 2.97709 3.34375 3.41580 3.42009 3.46801 4.39741 4.48076 4.49048 4.65458 4.99940 5.11610 5.22815 5.27987 5.34202 5.37146 5.47464 5.51892 5.52251 5.60226 5.63517 5.70355 5.81568 5.85747 5.96768 6.01211 6.10550 6.14613 6.17467 6.27464 6.34831 6.47634 6.59078 6.77243 6.82076 6.91081 7.03951 7.25044 7.27794 7.54525 7.56057 7.86545 7.89977 8.16309 8.26894 8.55415 8.66227 9.07250 9.65180 11.13540 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018271 B = 0.005691 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.121959 B = 4918.994896 C = 5725.774843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.089 0.911 4 C -0.152 4.152 5 C 0.519 3.481 6 O -0.527 6.527 7 N -0.607 5.607 8 C 0.268 3.732 9 N -0.542 5.542 10 C 0.146 3.854 11 C -0.479 4.479 12 H 0.059 0.941 13 C 0.053 3.947 14 N -0.899 5.899 15 Si 0.887 3.113 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.275 1.275 19 C 0.077 3.923 20 C -0.094 4.094 21 C -0.149 4.149 22 C -0.132 4.132 23 C -0.179 4.179 24 C 0.102 3.898 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.023 0.977 34 H 0.260 0.740 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.098 0.902 38 H 0.011 0.989 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.047 0.953 42 H 0.050 0.950 43 H 0.094 0.906 44 H 0.042 0.958 45 H 0.055 0.945 46 H 0.079 0.921 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.804 3.553 1.138 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 H 0.108 0.892 4 C -0.192 4.192 5 C 0.305 3.695 6 O -0.403 6.403 7 N -0.342 5.342 8 C 0.057 3.943 9 N -0.267 5.267 10 C 0.023 3.977 11 C -0.518 4.518 12 H 0.077 0.923 13 C -0.147 4.147 14 N -0.539 5.539 15 Si 0.715 3.285 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.200 1.200 19 C -0.051 4.051 20 C -0.096 4.096 21 C -0.205 4.205 22 C -0.190 4.190 23 C -0.234 4.234 24 C -0.022 4.022 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.116 0.884 38 H 0.030 0.970 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.009 3.369 0.428 17.345 hybrid contribution 0.710 0.347 0.714 1.065 sum -16.300 3.716 1.142 16.757 Atomic orbital electron populations 1.21753 0.93570 1.02189 1.02209 1.22133 0.96333 0.99769 0.94102 0.89216 1.22440 0.97240 1.00471 0.99043 1.20750 0.86823 0.79264 0.82642 1.90731 1.40139 1.46776 1.62650 1.48515 1.21344 1.57715 1.06641 1.22484 0.86286 0.92429 0.93078 1.62047 1.04463 1.16949 1.43267 1.21120 0.83698 0.95014 0.97885 1.20914 0.91133 0.97007 1.42730 0.92288 1.24824 0.98303 0.95246 0.96328 1.69916 1.20196 1.16855 1.46956 0.86655 0.82031 0.81538 0.78259 1.20809 1.21391 1.19998 1.22304 0.97134 0.97125 0.88572 1.21108 0.98059 0.94570 0.95815 1.22853 0.92653 1.05775 0.99245 1.21884 0.98644 0.99996 0.98466 1.23060 1.02400 0.97214 1.00761 1.22243 0.86943 0.95830 0.97176 0.92303 0.92121 0.92066 0.88396 0.88513 0.91392 0.89656 0.92113 0.95930 0.93070 0.91599 0.93507 0.88410 0.97029 0.89845 0.93993 0.93354 0.93131 0.88764 0.93849 0.92677 0.90322 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.11 37.16 0.34 -0.60 16 2 C -0.10 -0.99 3.75 -88.98 -0.33 -1.33 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.15 -1.77 6.42 -26.74 -0.17 -1.94 16 5 C 0.52 9.01 8.02 -10.86 -0.09 8.92 16 6 O -0.53 -11.87 17.59 5.56 0.10 -11.77 16 7 N -0.61 -9.64 3.07 -175.91 -0.54 -10.18 16 8 C 0.27 4.88 5.20 -63.32 -0.33 4.55 16 9 N -0.54 -11.34 4.76 -239.98 -1.14 -12.49 16 10 C 0.15 3.57 3.68 -4.97 -0.02 3.55 16 11 C -0.48 -12.77 5.17 -34.44 -0.18 -12.95 16 12 H 0.06 1.62 7.51 -52.49 -0.39 1.23 16 13 C 0.05 1.45 4.84 -17.82 -0.09 1.37 16 14 N -0.90 -25.58 13.24 55.43 0.73 -24.85 16 15 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.08 1.39 4.65 -3.83 -0.02 1.37 16 20 C -0.09 -1.63 0.77 -154.51 -0.12 -1.75 16 21 C -0.15 -3.09 7.17 37.16 0.27 -2.82 16 22 C -0.13 -1.89 8.01 37.15 0.30 -1.59 16 23 C -0.18 -2.98 7.37 37.16 0.27 -2.71 16 24 C 0.10 1.14 6.63 -3.12 -0.02 1.12 16 25 H 0.06 0.38 8.12 -51.93 -0.42 -0.05 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.10 0.96 7.88 -51.93 -0.41 0.55 16 29 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.10 4.17 -51.93 -0.22 0.89 16 31 H 0.09 1.76 7.41 -51.93 -0.38 1.38 16 32 H 0.06 1.45 1.23 -51.93 -0.06 1.38 16 33 H 0.02 0.63 7.66 -51.93 -0.40 0.23 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.07 1.29 7.72 -51.93 -0.40 0.89 16 36 H 0.05 0.73 4.70 -51.93 -0.24 0.48 16 37 H 0.10 2.25 4.53 -51.93 -0.24 2.01 16 38 H 0.01 0.21 7.66 -51.93 -0.40 -0.19 16 39 H 0.08 1.98 5.11 -51.93 -0.27 1.71 16 40 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.85 4.89 -51.93 -0.25 1.60 16 44 H 0.04 0.66 7.89 -51.93 -0.41 0.25 16 45 H 0.05 0.84 4.58 -51.93 -0.24 0.60 16 46 H 0.08 0.88 5.62 -51.93 -0.29 0.59 16 47 H 0.07 0.63 7.88 -51.93 -0.41 0.22 16 LS Contribution 340.16 15.07 5.13 5.13 Total: -1.00 -31.07 340.16 -8.46 -39.52 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.53 Total: 2.92 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -0.18 Total: -4.80 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.95 Total: -47.52 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.10 Total: -11.77 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.07 -8.46 -39.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733300296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.537 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds