Wall clock time and date at job start Tue Mar 31 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52845 * 1 3 3 H 1.11178 * 106.55753 * 2 1 4 4 C 1.51513 * 111.73742 * 243.04952 * 2 1 3 5 5 C 1.51951 * 115.62619 * 277.67010 * 4 2 1 6 6 C 1.52987 * 111.20242 * 79.09024 * 5 4 2 7 7 C 1.54363 * 108.03239 * 196.87044 * 5 4 2 8 8 C 1.52620 * 112.00627 * 315.34417 * 5 4 2 9 9 C 1.52770 * 110.42397 * 54.01114 * 8 5 4 10 10 C 1.52231 * 110.60056 * 115.85392 * 2 1 3 11 11 H 1.09417 * 109.41448 * 195.54502 * 10 2 1 12 12 N 1.47148 * 109.55718 * 314.62028 * 10 2 1 13 13 C 1.46902 * 110.99807 * 206.55349 * 12 10 2 14 14 C 1.50702 * 109.46757 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00151 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99593 * 179.97438 * 14 13 12 17 17 C 1.46504 * 119.99873 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.46995 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00270 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99726 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00222 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00025 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47451 * 89.99694 * 22 20 18 24 24 H 1.48497 * 109.47165 * 210.00137 * 22 20 18 25 25 H 1.48506 * 109.46969 * 329.99871 * 22 20 18 26 26 H 1.09000 * 109.46939 * 183.58529 * 1 2 3 27 27 H 1.08999 * 109.47220 * 303.59219 * 1 2 3 28 28 H 1.08998 * 109.46642 * 63.59503 * 1 2 3 29 29 H 1.10217 * 108.79097 * 155.33319 * 4 2 1 30 30 H 1.10185 * 108.84284 * 40.12203 * 4 2 1 31 31 H 1.08999 * 109.46950 * 53.62499 * 6 5 4 32 32 H 1.09004 * 109.46832 * 173.62303 * 6 5 4 33 33 H 1.08995 * 109.47030 * 293.62283 * 6 5 4 34 34 H 1.08998 * 109.47181 * 59.99144 * 7 5 4 35 35 H 1.08994 * 109.47381 * 180.02562 * 7 5 4 36 36 H 1.08999 * 109.46766 * 299.99665 * 7 5 4 37 37 H 1.09215 * 109.43530 * 174.41686 * 8 5 4 38 38 H 1.09222 * 109.43474 * 293.59206 * 8 5 4 39 39 H 1.08497 * 110.81926 * 59.34354 * 9 8 5 40 40 H 1.09528 * 108.92565 * 178.86895 * 9 8 5 41 41 H 1.00900 * 110.99774 * 82.59681 * 12 10 2 42 42 H 1.08993 * 109.47020 * 300.00052 * 13 12 10 43 43 H 1.08999 * 109.46591 * 60.00352 * 13 12 10 44 44 H 0.96995 * 120.00296 * 0.02562 * 16 14 13 45 45 H 1.08996 * 109.47414 * 300.00586 * 17 16 14 46 46 H 1.09002 * 109.46605 * 60.00232 * 17 16 14 47 47 H 0.96998 * 120.00113 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5284 0.0000 0.0000 3 1 1.8453 1.0657 0.0000 4 6 2.0896 -0.6379 -1.2545 5 6 2.1631 -2.1555 -1.2437 6 6 0.7960 -2.7778 -1.5339 7 6 3.1227 -2.5955 -2.3699 8 6 2.7163 -2.6919 0.0738 9 6 1.9147 -2.1414 1.2520 10 6 2.0641 -0.6214 1.2823 11 1 3.1227 -0.3684 1.3945 12 7 1.3257 -0.0837 2.4360 13 6 2.1468 -0.1276 3.6534 14 6 1.3593 0.4304 4.8108 15 8 0.2255 0.8252 4.6386 16 7 1.9146 0.4897 6.0374 17 6 1.1488 1.0315 7.1627 18 6 1.9907 0.9855 8.4117 19 1 2.9958 0.5924 8.3713 20 6 1.4778 1.4453 9.6061 21 7 0.2537 1.9236 9.6555 22 14 2.5216 1.3890 11.1542 23 1 3.2874 2.6550 11.2814 24 1 1.6417 1.2216 12.3387 25 1 3.4657 0.2455 11.0734 26 1 -0.3633 -1.0257 0.0643 27 1 -0.3633 0.5686 0.8560 28 1 -0.3632 0.4570 -0.9205 29 1 3.1019 -0.2400 -1.4328 30 1 1.4807 -0.3225 -2.1170 31 1 0.3991 -2.3663 -2.4619 32 1 0.9020 -3.8583 -1.6315 33 1 0.1130 -2.5522 -0.7150 34 1 4.1103 -2.1697 -2.1927 35 1 3.1926 -3.6831 -2.3835 36 1 2.7424 -2.2443 -3.3291 37 1 2.6584 -3.7825 0.0750 38 1 3.7620 -2.3942 0.1769 39 1 0.8694 -2.4210 1.1715 40 1 2.3186 -2.5568 2.1815 41 1 0.4550 -0.5758 2.5692 42 1 2.4253 -1.1595 3.8667 43 1 3.0472 0.4688 3.5059 44 1 2.8212 0.1736 6.1751 45 1 0.8705 2.0636 6.9494 46 1 0.2482 0.4354 7.3098 47 1 -0.1070 2.2474 10.4956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775708548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:40 Heat of formation + Delta-G solvation = -71.494873 kcal Electronic energy + Delta-G solvation = -22701.805265 eV Core-core repulsion = 19496.870899 eV Total energy + Delta-G solvation = -3204.934365 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.08605 -38.67371 -35.90778 -34.11846 -32.87402 -32.28615 -31.31291 -28.03361 -27.79525 -26.72802 -26.20603 -24.18407 -22.74922 -22.21943 -20.19754 -19.70658 -18.31971 -17.06850 -16.07253 -15.61835 -15.44035 -15.21005 -14.75896 -14.68541 -14.53694 -14.18368 -13.97063 -13.65304 -13.09130 -12.90884 -12.70818 -12.52701 -12.30291 -12.22737 -12.09928 -11.96351 -11.89193 -11.60409 -11.38574 -11.28919 -11.05010 -10.96820 -10.94986 -10.86629 -10.35195 -10.30745 -10.22527 -10.05922 -9.38479 -8.99148 -8.72097 -8.23106 -7.83674 -6.15636 -4.22509 3.24593 3.30553 3.32913 3.43073 3.83592 4.30271 4.39299 4.43225 4.48255 4.69234 4.82614 4.98183 5.05957 5.07603 5.20263 5.22302 5.26421 5.34121 5.42376 5.42829 5.45979 5.52122 5.62987 5.64271 5.66155 5.70868 5.75446 5.78577 5.86292 5.87795 5.93779 6.00915 6.08758 6.16633 6.31007 6.34835 6.49900 7.03124 7.34403 7.46199 7.49281 7.54362 7.69264 7.98779 8.66405 8.80610 9.15254 9.44310 10.94591 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040836 B = 0.002709 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.507696 B =10334.877302 C =10679.209798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 H 0.066 0.934 4 C -0.097 4.097 5 C -0.059 4.059 6 C -0.143 4.143 7 C -0.146 4.146 8 C -0.101 4.101 9 C -0.150 4.150 10 C 0.098 3.902 11 H 0.073 0.927 12 N -0.666 5.666 13 C 0.040 3.960 14 C 0.496 3.504 15 O -0.544 6.544 16 N -0.715 5.715 17 C 0.251 3.749 18 C -0.543 4.543 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.351 0.649 42 H 0.052 0.948 43 H 0.094 0.906 44 H 0.389 0.611 45 H 0.026 0.974 46 H 0.025 0.975 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.159 -9.712 -22.878 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.092 4.092 3 H 0.085 0.915 4 C -0.135 4.135 5 C -0.059 4.059 6 C -0.200 4.200 7 C -0.203 4.203 8 C -0.139 4.139 9 C -0.189 4.189 10 C -0.012 4.012 11 H 0.092 0.908 12 N -0.297 5.297 13 C -0.093 4.093 14 C 0.280 3.720 15 O -0.422 6.422 16 N -0.365 5.365 17 C 0.130 3.870 18 C -0.581 4.581 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.171 0.829 42 H 0.070 0.930 43 H 0.112 0.888 44 H 0.222 0.778 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.344 -8.651 -22.971 25.121 hybrid contribution 1.023 -1.103 1.205 1.927 sum 6.367 -9.754 -21.767 24.688 Atomic orbital electron populations 1.21858 0.94889 1.01620 1.02052 1.20699 0.96337 0.99700 0.92493 0.91544 1.21313 1.01074 0.93702 0.97436 1.20398 0.95522 0.95058 0.94885 1.21990 0.96482 0.99947 1.01591 1.22274 0.98969 1.00930 0.98142 1.21421 0.99199 0.99787 0.93484 1.22175 1.01129 0.97238 0.98358 1.21419 0.97726 0.91354 0.90717 0.90844 1.60313 1.06727 1.60572 1.02136 1.21872 0.97233 1.00032 0.90153 1.20391 0.87560 0.79972 0.84068 1.90660 1.18838 1.48524 1.84175 1.46447 1.18126 1.62852 1.09030 1.19076 0.91714 0.94475 0.81727 1.21233 1.00424 1.43373 0.93094 0.91939 1.24961 0.95123 0.94798 0.99186 1.69977 1.14781 1.40545 1.26989 0.86417 0.79910 0.78488 0.82098 1.20451 1.21010 1.19777 0.93107 0.90929 0.93448 0.92653 0.92167 0.92879 0.93065 0.91985 0.92844 0.92878 0.92886 0.92255 0.92058 0.91254 0.92369 0.82917 0.92999 0.88779 0.77844 0.95568 0.95654 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.37 37.08 0.31 -1.21 16 2 C -0.07 -0.72 2.42 -91.84 -0.22 -0.94 16 3 H 0.07 0.73 8.29 -50.67 -0.42 0.31 16 4 C -0.10 -0.80 4.12 -28.02 -0.12 -0.91 16 5 C -0.06 -0.44 0.70 -154.53 -0.11 -0.55 16 6 C -0.14 -1.07 8.02 37.15 0.30 -0.77 16 7 C -0.15 -0.98 8.12 37.87 0.31 -0.67 16 8 C -0.10 -0.80 4.52 -27.04 -0.12 -0.93 16 9 C -0.15 -1.39 4.88 -26.97 -0.13 -1.52 16 10 C 0.10 1.02 2.21 -68.09 -0.15 0.87 16 11 H 0.07 0.76 7.77 -51.69 -0.40 0.36 16 12 N -0.67 -9.00 4.88 -108.20 -0.53 -9.53 16 13 C 0.04 0.56 5.95 -4.97 -0.03 0.53 16 14 C 0.50 9.90 7.87 -10.98 -0.09 9.81 16 15 O -0.54 -13.17 16.20 5.55 0.09 -13.08 16 16 N -0.72 -15.10 5.55 -61.47 -0.34 -15.44 16 17 C 0.25 6.72 5.43 -5.19 -0.03 6.69 16 18 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 19 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 22 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H 0.05 0.49 5.04 -51.93 -0.26 0.23 16 27 H 0.07 0.91 7.18 -51.93 -0.37 0.54 16 28 H 0.05 0.45 8.06 -51.93 -0.42 0.03 16 29 H 0.05 0.44 7.93 -51.23 -0.41 0.03 16 30 H 0.06 0.48 7.89 -51.25 -0.40 0.07 16 31 H 0.05 0.38 8.07 -51.93 -0.42 -0.04 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.51 4.65 -51.93 -0.24 0.26 16 34 H 0.05 0.35 8.06 -51.93 -0.42 -0.07 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.45 8.14 -51.81 -0.42 0.03 16 38 H 0.06 0.48 8.12 -51.80 -0.42 0.06 16 39 H 0.07 0.67 6.14 -52.21 -0.32 0.35 16 40 H 0.06 0.56 7.44 -51.63 -0.38 0.17 16 41 H 0.35 5.02 7.58 -39.29 -0.30 4.73 16 42 H 0.05 0.64 7.38 -51.93 -0.38 0.25 16 43 H 0.09 1.20 8.04 -51.93 -0.42 0.78 16 44 H 0.39 7.00 8.32 -40.82 -0.34 6.66 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -31.21 358.82 -8.55 -39.76 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.40 Total: 5.60 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -0.49 Total: -3.08 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.13 Total: -50.52 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.21 -8.55 -39.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775708548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.733 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds