Wall clock time and date at job start Tue Mar 31 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52829 * 1 3 3 H 1.11177 * 106.56211 * 2 1 4 4 C 1.51531 * 111.73900 * 116.95055 * 2 1 3 5 5 C 1.51947 * 115.61788 * 82.32555 * 4 2 1 6 6 C 1.54376 * 108.02340 * 163.13761 * 5 4 2 7 7 C 1.52990 * 111.20903 * 280.91145 * 5 4 2 8 8 C 1.52607 * 112.00931 * 44.66958 * 5 4 2 9 9 C 1.52775 * 110.42076 * 305.97467 * 8 5 4 10 10 C 1.52227 * 110.60281 * 244.14493 * 2 1 3 11 11 H 1.09416 * 109.41742 * 164.44966 * 10 2 1 12 12 N 1.47144 * 109.55629 * 45.38087 * 10 2 1 13 13 C 1.46905 * 110.99857 * 153.44512 * 12 10 2 14 14 C 1.50700 * 109.46943 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00348 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00217 * 179.97438 * 14 13 12 17 17 C 1.46501 * 120.00358 * 180.02562 * 16 14 13 18 18 C 1.50695 * 109.47057 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00442 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99714 * 179.97438 * 18 17 16 21 21 N 1.31508 * 120.00288 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47085 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47593 * 119.99828 * 22 20 18 25 25 H 1.48507 * 109.47077 * 240.00336 * 22 20 18 26 26 H 1.09008 * 109.46984 * 296.42103 * 1 2 3 27 27 H 1.09004 * 109.47247 * 56.41894 * 1 2 3 28 28 H 1.09002 * 109.47154 * 176.41760 * 1 2 3 29 29 H 1.10191 * 108.83516 * 319.87748 * 4 2 1 30 30 H 1.10204 * 108.78755 * 204.66992 * 4 2 1 31 31 H 1.08998 * 109.47220 * 59.99787 * 6 5 4 32 32 H 1.08994 * 109.46886 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.46749 * 299.99704 * 6 5 4 34 34 H 1.09001 * 109.46515 * 66.40493 * 7 5 4 35 35 H 1.08996 * 109.47349 * 186.40567 * 7 5 4 36 36 H 1.08995 * 109.47243 * 306.41177 * 7 5 4 37 37 H 1.09217 * 109.44434 * 66.40031 * 8 5 4 38 38 H 1.09225 * 109.43949 * 185.57632 * 8 5 4 39 39 H 1.09530 * 108.92447 * 181.13381 * 9 8 5 40 40 H 1.08485 * 110.82095 * 300.65433 * 9 8 5 41 41 H 1.00897 * 111.00460 * 29.48875 * 12 10 2 42 42 H 1.08991 * 109.47010 * 299.99734 * 13 12 10 43 43 H 1.08995 * 109.47036 * 60.00327 * 13 12 10 44 44 H 0.96997 * 119.99196 * 0.02562 * 16 14 13 45 45 H 1.09004 * 109.46680 * 299.99848 * 17 16 14 46 46 H 1.08997 * 109.46986 * 59.99834 * 17 16 14 47 47 H 0.96998 * 120.00737 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5283 0.0000 0.0000 3 1 1.8452 1.0656 0.0000 4 6 2.0895 -0.6379 1.2547 5 6 2.1629 -2.1556 1.2437 6 6 3.1225 -2.5956 2.3700 7 6 0.7957 -2.7779 1.5338 8 6 2.7162 -2.6919 -0.0736 9 6 1.9146 -2.1414 -1.2519 10 6 2.0640 -0.6214 -1.2823 11 1 3.1225 -0.3684 -1.3945 12 7 1.3257 -0.0838 -2.4360 13 6 2.1468 -0.1276 -3.6533 14 6 1.3589 0.4292 -4.8110 15 8 0.2248 0.8233 -4.6391 16 7 1.9145 0.4893 -6.0375 17 6 1.1487 1.0311 -7.1628 18 6 1.9910 0.9860 -8.4116 19 1 2.9963 0.5935 -8.3710 20 6 1.4782 1.4459 -9.6059 21 7 0.2539 1.9234 -9.6555 22 14 2.5220 1.3895 -11.1541 23 1 3.8518 0.8114 -10.8336 24 1 1.8485 0.5471 -12.1748 25 1 2.6959 2.7657 -11.6843 26 1 -0.3633 0.4573 0.9204 27 1 -0.3634 0.5684 -0.8562 28 1 -0.3633 -1.0257 -0.0642 29 1 1.4805 -0.3225 2.1171 30 1 3.1017 -0.2400 1.4329 31 1 2.7422 -2.2443 3.3292 32 1 3.1930 -3.6832 2.3830 33 1 4.1102 -2.1699 2.1928 34 1 0.1129 -2.5526 0.7146 35 1 0.9017 -3.8583 1.6318 36 1 0.3986 -2.3661 2.4615 37 1 3.7619 -2.3943 -0.1767 38 1 2.6583 -3.7826 -0.0750 39 1 2.3185 -2.5568 -2.1814 40 1 0.8695 -2.4211 -1.1716 41 1 1.0008 0.8537 -2.2525 42 1 3.0471 0.4688 -3.5059 43 1 2.4253 -1.1595 -3.8667 44 1 2.8213 0.1738 -6.1750 45 1 0.2485 0.4344 -7.3104 46 1 0.8698 2.0629 -6.9492 47 1 -0.1069 2.2473 -10.4956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775708551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:43 Heat of formation + Delta-G solvation = -70.347514 kcal Electronic energy + Delta-G solvation = -22695.201030 eV Core-core repulsion = 19490.316417 eV Total energy + Delta-G solvation = -3204.884612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.05607 -38.67372 -35.91480 -34.11835 -32.83688 -32.27934 -31.37531 -28.04875 -27.77950 -26.75433 -26.20787 -24.29821 -22.68595 -22.05334 -20.23423 -19.66468 -18.17751 -17.09552 -16.04651 -15.72618 -15.50647 -15.25070 -14.76376 -14.67879 -14.59040 -14.14203 -13.98112 -13.52225 -13.11899 -12.91637 -12.70103 -12.58931 -12.28181 -12.23630 -12.05847 -11.94919 -11.81738 -11.57156 -11.37424 -11.26156 -11.03792 -10.96022 -10.94193 -10.88660 -10.38618 -10.30907 -10.16263 -9.97306 -9.36692 -8.98332 -8.72635 -8.29614 -7.83689 -6.15772 -4.22540 3.23776 3.30754 3.33825 3.43222 3.82962 4.29341 4.35763 4.42895 4.52063 4.66431 4.87566 4.88659 5.05109 5.13253 5.20294 5.24891 5.30030 5.39170 5.43247 5.45782 5.48413 5.55439 5.61463 5.66011 5.66417 5.70386 5.74928 5.81152 5.86186 5.92577 5.95691 6.02213 6.07246 6.20960 6.27827 6.41090 6.46893 7.03640 7.34517 7.46535 7.49431 7.54387 7.69504 7.98681 8.66575 8.80790 9.15408 9.44363 10.94515 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040738 B = 0.002709 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.147800 B =10334.575292 C =10680.491165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.056 0.944 4 C -0.094 4.094 5 C -0.058 4.058 6 C -0.146 4.146 7 C -0.144 4.144 8 C -0.106 4.106 9 C -0.106 4.106 10 C 0.097 3.903 11 H 0.039 0.961 12 N -0.666 5.666 13 C 0.040 3.960 14 C 0.496 3.504 15 O -0.544 6.544 16 N -0.715 5.715 17 C 0.251 3.749 18 C -0.542 4.542 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.903 3.097 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.350 0.650 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.389 0.611 45 H 0.026 0.974 46 H 0.025 0.975 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.627 -8.195 23.333 25.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.075 0.925 4 C -0.132 4.132 5 C -0.058 4.058 6 C -0.203 4.203 7 C -0.201 4.201 8 C -0.144 4.144 9 C -0.145 4.145 10 C -0.012 4.012 11 H 0.057 0.943 12 N -0.300 5.300 13 C -0.093 4.093 14 C 0.280 3.720 15 O -0.422 6.422 16 N -0.365 5.365 17 C 0.130 3.870 18 C -0.580 4.580 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.171 0.829 42 H 0.069 0.931 43 H 0.113 0.887 44 H 0.222 0.778 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.348 -8.379 23.164 25.207 hybrid contribution 1.661 0.603 -0.863 1.966 sum 7.008 -7.775 22.301 24.636 Atomic orbital electron populations 1.21830 0.94127 1.02677 1.01380 1.20933 0.96978 0.98896 0.93710 0.92511 1.21249 1.00906 0.94081 0.96963 1.20388 0.95645 0.94722 0.95058 1.22279 0.98914 1.01021 0.98107 1.21994 0.96454 1.00007 1.01615 1.21507 0.99216 0.99981 0.93701 1.21415 1.01298 0.94330 0.97412 1.21368 0.95140 0.95362 0.89374 0.94258 1.60306 1.38752 1.29628 1.01277 1.21891 0.94683 1.02054 0.90643 1.20382 0.87539 0.79773 0.84268 1.90659 1.18557 1.48627 1.84330 1.46449 1.18058 1.62865 1.09091 1.19081 0.91798 0.94394 0.81748 1.21269 1.00422 1.43260 0.93096 0.91886 1.24960 0.95131 0.94804 0.99192 1.69982 1.14789 1.40653 1.26868 0.86366 0.80169 0.77815 0.82582 1.19651 1.20782 1.20817 0.93498 0.91473 0.92057 0.92100 0.92706 0.92935 0.92783 0.92927 0.91731 0.92978 0.92984 0.92287 0.91993 0.92355 0.90695 0.82944 0.93083 0.88749 0.77844 0.95557 0.95658 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.57 37.07 0.32 -1.14 16 2 C -0.09 -0.82 2.15 -91.84 -0.20 -1.02 16 3 H 0.06 0.54 8.29 -50.67 -0.42 0.12 16 4 C -0.09 -0.76 4.12 -28.01 -0.12 -0.88 16 5 C -0.06 -0.45 0.70 -154.53 -0.11 -0.56 16 6 C -0.15 -0.99 8.12 37.88 0.31 -0.68 16 7 C -0.14 -1.11 8.03 37.15 0.30 -0.81 16 8 C -0.11 -0.88 4.52 -27.05 -0.12 -1.01 16 9 C -0.11 -1.08 5.14 -26.97 -0.14 -1.22 16 10 C 0.10 1.04 2.24 -68.10 -0.15 0.89 16 11 H 0.04 0.42 7.77 -51.69 -0.40 0.02 16 12 N -0.67 -9.11 5.17 -108.21 -0.56 -9.67 16 13 C 0.04 0.57 5.95 -4.97 -0.03 0.54 16 14 C 0.50 9.95 7.87 -10.98 -0.09 9.86 16 15 O -0.54 -13.19 16.20 5.55 0.09 -13.10 16 16 N -0.72 -15.15 5.55 -61.47 -0.34 -15.49 16 17 C 0.25 6.72 5.43 -5.20 -0.03 6.69 16 18 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 19 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.30 13.28 55.43 0.74 -25.56 16 22 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 H 0.05 0.42 8.06 -51.92 -0.42 0.00 16 27 H 0.07 0.80 6.68 -51.93 -0.35 0.45 16 28 H 0.06 0.64 5.04 -51.93 -0.26 0.38 16 29 H 0.06 0.47 7.89 -51.25 -0.40 0.07 16 30 H 0.05 0.43 7.93 -51.24 -0.41 0.02 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.35 8.06 -51.93 -0.42 -0.07 16 34 H 0.06 0.56 4.65 -51.93 -0.24 0.32 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.38 8.07 -51.93 -0.42 -0.04 16 37 H 0.06 0.48 8.12 -51.81 -0.42 0.06 16 38 H 0.06 0.49 8.14 -51.80 -0.42 0.07 16 39 H 0.06 0.62 7.44 -51.63 -0.38 0.24 16 40 H 0.07 0.84 6.15 -52.22 -0.32 0.52 16 41 H 0.35 5.03 6.98 -39.29 -0.27 4.76 16 42 H 0.05 0.64 8.04 -51.93 -0.42 0.22 16 43 H 0.09 1.23 7.38 -51.93 -0.38 0.84 16 44 H 0.39 7.04 8.32 -40.82 -0.34 6.70 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -31.29 358.24 -8.52 -39.81 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -8.35 Total: 5.50 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -0.47 Total: -2.81 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.16 Total: -50.72 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.29 -8.52 -39.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775708551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.541 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds