Wall clock time and date at job start Tue Mar 31 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46899 * 2 1 4 4 C 1.52994 * 109.47250 * 119.99928 * 2 1 3 5 5 C 1.53002 * 109.46952 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46877 * 60.00345 * 5 4 2 7 7 C 1.52999 * 109.47186 * 180.02562 * 5 4 2 8 8 C 1.53000 * 109.47294 * 300.00501 * 5 4 2 9 9 C 1.52999 * 109.47210 * 59.99763 * 8 5 4 10 10 C 1.52995 * 109.47099 * 300.00054 * 9 8 5 11 11 H 1.09003 * 109.47112 * 300.00073 * 10 9 8 12 12 N 1.46906 * 109.46946 * 179.97438 * 10 9 8 13 13 C 1.46901 * 110.99793 * 85.00144 * 12 10 9 14 14 C 1.50701 * 109.46921 * 179.97438 * 13 12 10 15 15 O 1.21280 * 119.99781 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.46497 * 119.99566 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.46835 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00280 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99788 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46999 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46979 * 120.00025 * 22 20 18 25 25 H 1.48496 * 109.47443 * 239.99733 * 22 20 18 26 26 H 1.09003 * 109.46899 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46932 * 299.99653 * 1 2 3 28 28 H 1.09001 * 109.47440 * 59.99832 * 1 2 3 29 29 H 1.08994 * 109.47496 * 300.00074 * 4 2 1 30 30 H 1.09003 * 109.47111 * 60.00202 * 4 2 1 31 31 H 1.09000 * 109.47184 * 59.99580 * 6 5 4 32 32 H 1.09005 * 109.47083 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.47149 * 299.99892 * 6 5 4 34 34 H 1.08999 * 109.47008 * 59.99753 * 7 5 4 35 35 H 1.08998 * 109.47149 * 180.02562 * 7 5 4 36 36 H 1.09008 * 109.47114 * 300.00237 * 7 5 4 37 37 H 1.09005 * 109.47004 * 179.97438 * 8 5 4 38 38 H 1.09003 * 109.46980 * 299.99703 * 8 5 4 39 39 H 1.09000 * 109.46795 * 179.97438 * 9 8 5 40 40 H 1.09003 * 109.47198 * 60.00074 * 9 8 5 41 41 H 1.00898 * 110.99995 * 208.95221 * 12 10 9 42 42 H 1.09002 * 109.47401 * 59.99808 * 13 12 10 43 43 H 1.09001 * 109.46874 * 299.99821 * 13 12 10 44 44 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 45 45 H 1.09001 * 109.47487 * 300.00114 * 17 16 14 46 46 H 1.09002 * 109.47182 * 60.00342 * 17 16 14 47 47 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5701 -0.7217 1.2488 6 6 4.0805 0.7207 1.2485 7 6 4.0802 -1.4435 2.4977 8 6 4.0796 -1.4432 -0.0005 9 6 3.5695 -0.7220 -1.2497 10 6 2.0395 -0.7215 -1.2493 11 1 1.6759 -1.7491 -1.2491 12 7 1.5498 -0.0284 -2.4484 13 6 1.4864 -0.9431 -3.5962 14 6 0.9804 -0.1985 -4.8046 15 8 0.7005 0.9784 -4.7184 16 7 0.8397 -0.8402 -5.9815 17 6 0.3483 -0.1161 -7.1564 18 6 0.2832 -1.0545 -8.3338 19 1 0.5779 -2.0870 -8.2184 20 6 -0.1527 -0.5948 -9.5584 21 7 -0.5112 0.6627 -9.6992 22 14 -0.2328 -1.7578 -11.0180 23 1 0.2219 -3.1083 -10.6003 24 1 -1.6312 -1.8374 -11.5114 25 1 0.6466 -1.2523 -12.1026 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.6768 -0.2074 2.1392 30 1 1.6768 -1.7489 1.2492 31 1 3.7175 1.2347 2.1385 32 1 5.1706 0.7203 1.2487 33 1 3.7171 1.2345 0.3586 34 1 3.7165 -2.4710 2.4975 35 1 5.1702 -1.4435 2.4976 36 1 3.7172 -0.9298 3.3880 37 1 5.1696 -1.4432 -0.0010 38 1 3.7159 -2.4708 -0.0003 39 1 3.9329 -1.2358 -2.1397 40 1 3.9331 0.3056 -1.2499 41 1 0.6523 0.3998 -2.2774 42 1 0.8099 -1.7666 -3.3676 43 1 2.4817 -1.3371 -3.8021 44 1 1.0639 -1.7813 -6.0505 45 1 -0.6471 0.2776 -6.9505 46 1 1.0247 0.7076 -7.3847 47 1 -0.8182 0.9860 -10.5606 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775708553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:46 Heat of formation + Delta-G solvation = -71.421158 kcal Electronic energy + Delta-G solvation = -22678.312815 eV Core-core repulsion = 19473.381646 eV Total energy + Delta-G solvation = -3204.931169 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.19645 -38.68698 -35.89955 -34.11909 -32.97270 -32.28794 -31.34993 -28.05485 -27.56668 -26.85155 -26.30422 -24.38313 -22.46580 -21.72090 -20.38017 -19.62829 -18.67409 -17.22411 -16.10400 -15.62429 -15.29582 -15.19220 -15.13219 -14.71836 -14.50137 -14.11868 -13.96569 -13.37138 -13.27643 -12.81720 -12.68826 -12.65750 -12.46016 -12.11208 -12.02812 -12.00876 -11.92355 -11.76893 -11.47215 -11.21771 -11.10265 -10.95198 -10.90699 -10.88651 -10.36487 -10.31764 -10.29897 -10.03190 -9.36651 -8.98177 -8.72618 -8.29189 -7.83757 -6.15728 -4.22487 3.23807 3.30780 3.33883 3.42969 3.83798 4.29663 4.37833 4.44511 4.52145 4.66305 4.76764 4.94200 5.04758 5.19708 5.20325 5.27199 5.31833 5.36458 5.38079 5.44996 5.49014 5.50283 5.57538 5.64291 5.65648 5.68330 5.72429 5.75307 5.83023 5.87573 5.95788 5.97247 6.09371 6.14692 6.20833 6.22596 6.43082 7.05274 7.34655 7.47216 7.51039 7.54446 7.69546 7.98679 8.66500 8.80774 9.15273 9.44385 10.94557 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038389 B = 0.002725 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.201287 B =10274.597085 C =10533.049582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.095 4.095 3 H 0.083 0.917 4 C -0.099 4.099 5 C -0.066 4.066 6 C -0.146 4.146 7 C -0.141 4.141 8 C -0.107 4.107 9 C -0.111 4.111 10 C 0.095 3.905 11 H 0.041 0.959 12 N -0.670 5.670 13 C 0.041 3.959 14 C 0.496 3.504 15 O -0.544 6.544 16 N -0.715 5.715 17 C 0.250 3.750 18 C -0.542 4.542 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.351 0.649 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.389 0.611 45 H 0.025 0.975 46 H 0.027 0.973 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.462 -5.906 23.786 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.114 4.114 3 H 0.102 0.898 4 C -0.137 4.137 5 C -0.066 4.066 6 C -0.203 4.203 7 C -0.198 4.198 8 C -0.145 4.145 9 C -0.149 4.149 10 C -0.015 4.015 11 H 0.059 0.941 12 N -0.305 5.305 13 C -0.092 4.092 14 C 0.280 3.720 15 O -0.422 6.422 16 N -0.364 5.364 17 C 0.130 3.870 18 C -0.580 4.580 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.173 0.827 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.222 0.778 45 H 0.043 0.957 46 H 0.045 0.955 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.775 -4.651 23.499 25.185 hybrid contribution -0.745 -1.612 -0.761 1.932 sum 7.030 -6.263 22.739 24.611 Atomic orbital electron populations 1.21923 0.95433 1.01753 1.02161 1.21322 0.95221 1.00815 0.94016 0.89830 1.21610 0.94352 1.00442 0.97255 1.20549 0.95179 0.95834 0.95033 1.21990 1.00666 0.95521 1.02157 1.21865 1.00849 1.00049 0.97064 1.21601 1.00184 0.98881 0.93864 1.21592 0.94592 1.01694 0.97000 1.21543 0.95444 0.95575 0.88946 0.94096 1.60187 1.35146 1.32042 1.03113 1.21876 1.01886 0.94337 0.91100 1.20391 0.79132 0.87887 0.84580 1.90658 1.50742 1.15904 1.84898 1.46446 1.65546 1.13814 1.10631 1.19085 0.94927 0.92487 0.80545 1.21270 1.45923 0.96500 0.94350 0.91881 1.24962 0.94865 0.95329 0.98934 1.69985 1.43077 1.14295 1.24933 0.86365 0.77798 0.80682 0.82079 1.19650 1.20818 1.20783 0.92878 0.92333 0.92090 0.91887 0.92116 0.93030 0.92939 0.91462 0.92841 0.92759 0.92835 0.91942 0.92248 0.92101 0.90769 0.82658 0.93080 0.88751 0.77832 0.95654 0.95545 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 8.96 37.16 0.33 -1.11 16 2 C -0.10 -0.90 2.11 -90.62 -0.19 -1.09 16 3 H 0.08 0.86 6.43 -51.93 -0.33 0.53 16 4 C -0.10 -0.78 4.01 -26.73 -0.11 -0.89 16 5 C -0.07 -0.51 0.77 -154.50 -0.12 -0.62 16 6 C -0.15 -1.16 7.78 37.16 0.29 -0.87 16 7 C -0.14 -0.94 8.47 37.16 0.31 -0.63 16 8 C -0.11 -0.89 4.73 -26.73 -0.13 -1.02 16 9 C -0.11 -1.13 5.15 -26.73 -0.14 -1.27 16 10 C 0.09 1.02 1.97 -67.71 -0.13 0.89 16 11 H 0.04 0.44 7.80 -51.93 -0.41 0.03 16 12 N -0.67 -9.37 5.93 -107.99 -0.64 -10.01 16 13 C 0.04 0.59 5.97 -4.97 -0.03 0.56 16 14 C 0.50 10.02 7.87 -10.98 -0.09 9.94 16 15 O -0.54 -13.31 16.20 5.56 0.09 -13.22 16 16 N -0.72 -15.21 5.55 -61.47 -0.34 -15.55 16 17 C 0.25 6.72 5.43 -5.19 -0.03 6.70 16 18 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 19 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 22 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.64 6.21 -51.93 -0.32 0.32 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.61 4.81 -51.93 -0.25 0.36 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.65 7.46 -51.93 -0.39 0.27 16 40 H 0.07 0.83 6.43 -51.93 -0.33 0.50 16 41 H 0.35 5.14 5.86 -39.29 -0.23 4.91 16 42 H 0.05 0.65 8.06 -51.93 -0.42 0.23 16 43 H 0.09 1.24 7.44 -51.93 -0.39 0.85 16 44 H 0.39 7.06 8.32 -40.82 -0.34 6.72 16 45 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -31.46 360.34 -8.62 -40.09 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -8.44 Total: 5.81 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -0.44 Total: -2.91 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.25 Total: -51.14 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.46 -8.62 -40.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775708553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.335 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds