Wall clock time and date at job start Tue Mar 31 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.53003 * 109.46987 * 239.99591 * 2 1 3 5 5 C 1.52996 * 109.47109 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47082 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.46973 * 300.00053 * 5 4 2 8 8 C 1.52994 * 109.47271 * 60.00205 * 5 4 2 9 9 C 1.52998 * 109.47186 * 300.00082 * 8 5 4 10 10 C 1.52996 * 109.47082 * 59.99803 * 9 8 5 11 11 H 1.08999 * 109.47380 * 60.00461 * 10 9 8 12 12 N 1.46901 * 109.47135 * 180.02562 * 10 9 8 13 13 C 1.46902 * 110.99844 * 274.99848 * 12 10 9 14 14 C 1.50702 * 109.47027 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00262 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99928 * 179.72353 * 14 13 12 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 13 18 18 C 1.50694 * 109.47550 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99963 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00446 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99703 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00230 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46973 * 90.00368 * 22 20 18 24 24 H 1.48497 * 109.46950 * 210.00151 * 22 20 18 25 25 H 1.48504 * 109.47027 * 330.00190 * 22 20 18 26 26 H 1.09005 * 109.46730 * 299.99707 * 1 2 3 27 27 H 1.08997 * 109.46875 * 59.99708 * 1 2 3 28 28 H 1.08994 * 109.47043 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47415 * 300.00362 * 4 2 1 30 30 H 1.09001 * 109.46663 * 60.00114 * 4 2 1 31 31 H 1.09008 * 109.47327 * 60.00021 * 6 5 4 32 32 H 1.09002 * 109.47511 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.47142 * 300.00145 * 6 5 4 34 34 H 1.08996 * 109.47001 * 60.00467 * 7 5 4 35 35 H 1.08999 * 109.46888 * 179.97438 * 7 5 4 36 36 H 1.08997 * 109.47822 * 299.99993 * 7 5 4 37 37 H 1.09007 * 109.46978 * 60.00183 * 8 5 4 38 38 H 1.08999 * 109.47374 * 179.97438 * 8 5 4 39 39 H 1.08998 * 109.47142 * 299.99657 * 9 8 5 40 40 H 1.09001 * 109.46963 * 179.97438 * 9 8 5 41 41 H 1.00902 * 111.00235 * 151.05085 * 12 10 9 42 42 H 1.09004 * 109.47131 * 60.00016 * 13 12 10 43 43 H 1.08994 * 109.47471 * 299.99766 * 13 12 10 44 44 H 0.97000 * 120.00317 * 0.28382 * 16 14 13 45 45 H 1.08998 * 109.47134 * 300.00670 * 17 16 14 46 46 H 1.09002 * 109.46857 * 59.99862 * 17 16 14 47 47 H 0.97000 * 119.99614 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0799 -1.4427 -2.4984 7 6 4.0805 0.7204 -1.2487 8 6 4.0795 -1.4435 0.0003 9 6 3.5695 -0.7222 1.2495 10 6 2.0396 -0.7216 1.2492 11 1 1.6758 -1.7491 1.2491 12 7 1.5499 -0.0286 2.4483 13 6 1.4866 -0.9434 3.5960 14 6 0.9817 -0.1984 4.8049 15 8 0.7018 0.9786 4.7187 16 7 0.8355 -0.8415 5.9802 17 6 0.3391 -0.1188 7.1539 18 6 0.2694 -1.0583 8.3301 19 1 0.5658 -2.0905 8.2150 20 6 -0.1716 -0.6001 9.5534 21 7 -0.5320 0.6570 9.6937 22 14 -0.2572 -1.7645 11.0115 23 1 1.0337 -1.7351 11.7450 24 1 -1.3525 -1.3403 11.9201 25 1 -0.5209 -3.1439 10.5286 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.6767 -1.7490 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.7170 -0.9283 -3.3883 32 1 5.1700 -1.4428 -2.4985 33 1 3.7162 -2.4702 -2.4991 34 1 3.7172 1.2342 -0.3587 35 1 5.1705 0.7200 -1.2480 36 1 3.7176 1.2345 -2.1386 37 1 3.7158 -2.4711 0.0000 38 1 5.1695 -1.4443 0.0003 39 1 3.9333 0.3053 1.2497 40 1 3.9322 -1.2366 2.1395 41 1 0.6524 0.3997 2.2774 42 1 2.4818 -1.3374 3.8020 43 1 0.8099 -1.7667 3.3675 44 1 1.0591 -1.7829 6.0492 45 1 1.0147 0.7043 7.3863 46 1 -0.6552 0.2755 6.9440 47 1 -0.8426 0.9793 10.5542 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775708554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:49 Heat of formation + Delta-G solvation = -71.386495 kcal Electronic energy + Delta-G solvation = -22678.188958 eV Core-core repulsion = 19473.259292 eV Total energy + Delta-G solvation = -3204.929666 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.19707 -38.68646 -35.90031 -34.11810 -32.97226 -32.28686 -31.35061 -28.05470 -27.56534 -26.85153 -26.30402 -24.38388 -22.46475 -21.72034 -20.38021 -19.62810 -18.67436 -17.22259 -16.10281 -15.62437 -15.29481 -15.19276 -15.13101 -14.71969 -14.49889 -14.11915 -13.96826 -13.37148 -13.27772 -12.81674 -12.68658 -12.65790 -12.46137 -12.10894 -12.02914 -12.00836 -11.91755 -11.76779 -11.47000 -11.21783 -11.10193 -10.97553 -10.91057 -10.86367 -10.36484 -10.31693 -10.29690 -10.03196 -9.38331 -8.98103 -8.72030 -8.29194 -7.83708 -6.15523 -4.22367 3.24698 3.30625 3.33036 3.43081 3.83675 4.29691 4.37852 4.44532 4.52195 4.66285 4.76805 4.94200 5.04758 5.19699 5.20434 5.27206 5.31866 5.36480 5.38083 5.45022 5.49050 5.50305 5.57541 5.64280 5.65651 5.68304 5.72430 5.75313 5.83052 5.87588 5.95781 5.97262 6.09380 6.14719 6.20859 6.22585 6.43082 7.05274 7.34617 7.47107 7.51036 7.54519 7.69439 7.98896 8.66470 8.80702 9.15276 9.44434 10.94726 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038432 B = 0.002724 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.389637 B =10276.673839 C =10533.704616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.095 4.095 3 H 0.083 0.917 4 C -0.099 4.099 5 C -0.066 4.066 6 C -0.141 4.141 7 C -0.146 4.146 8 C -0.107 4.107 9 C -0.111 4.111 10 C 0.095 3.905 11 H 0.041 0.959 12 N -0.670 5.670 13 C 0.041 3.959 14 C 0.496 3.504 15 O -0.544 6.544 16 N -0.715 5.715 17 C 0.251 3.749 18 C -0.543 4.543 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.351 0.649 42 H 0.094 0.906 43 H 0.051 0.949 44 H 0.389 0.611 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.499 -5.886 -23.764 25.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.114 4.114 3 H 0.102 0.898 4 C -0.137 4.137 5 C -0.066 4.066 6 C -0.198 4.198 7 C -0.203 4.203 8 C -0.145 4.145 9 C -0.149 4.149 10 C -0.015 4.015 11 H 0.059 0.941 12 N -0.305 5.305 13 C -0.092 4.092 14 C 0.280 3.720 15 O -0.422 6.422 16 N -0.364 5.364 17 C 0.130 3.870 18 C -0.581 4.581 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.173 0.827 42 H 0.112 0.888 43 H 0.069 0.931 44 H 0.222 0.778 45 H 0.044 0.956 46 H 0.044 0.956 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.804 -4.629 -23.477 25.169 hybrid contribution -0.732 -1.621 0.759 1.934 sum 7.071 -6.250 -22.718 24.601 Atomic orbital electron populations 1.21923 0.95432 1.01754 1.02161 1.21323 0.95221 1.00813 0.94016 0.89828 1.21611 0.94352 1.00442 0.97256 1.20545 0.95181 0.95839 0.95029 1.21865 1.00849 1.00054 0.97060 1.21988 1.00667 0.95525 1.02157 1.21597 1.00186 0.98880 0.93864 1.21591 0.94594 1.01690 0.96996 1.21543 0.95446 0.95576 0.88947 0.94096 1.60187 1.35149 1.32040 1.03113 1.21875 1.01897 0.94337 0.91094 1.20389 0.79135 0.87889 0.84573 1.90658 1.50759 1.15928 1.84859 1.46448 1.65405 1.13778 1.10809 1.19077 0.94864 0.92498 0.80565 1.21233 1.45899 0.96495 0.94492 0.91938 1.24960 0.94852 0.95341 0.98914 1.69979 1.42900 1.14370 1.25042 0.86416 0.77845 0.80720 0.81926 1.20449 1.21009 1.19775 0.92096 0.92326 0.92878 0.92115 0.91888 0.92833 0.92761 0.92844 0.91470 0.92940 0.93023 0.92254 0.91943 0.90763 0.92102 0.82656 0.88763 0.93064 0.77836 0.95564 0.95647 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 8.96 37.16 0.33 -1.11 16 2 C -0.10 -0.90 2.11 -90.62 -0.19 -1.09 16 3 H 0.08 0.87 6.43 -51.93 -0.33 0.53 16 4 C -0.10 -0.78 4.01 -26.73 -0.11 -0.89 16 5 C -0.07 -0.51 0.77 -154.51 -0.12 -0.62 16 6 C -0.14 -0.94 8.47 37.16 0.31 -0.63 16 7 C -0.15 -1.16 7.78 37.16 0.29 -0.87 16 8 C -0.11 -0.89 4.73 -26.74 -0.13 -1.02 16 9 C -0.11 -1.13 5.15 -26.73 -0.14 -1.27 16 10 C 0.09 1.02 1.97 -67.71 -0.13 0.89 16 11 H 0.04 0.44 7.80 -51.93 -0.41 0.03 16 12 N -0.67 -9.37 5.93 -107.99 -0.64 -10.01 16 13 C 0.04 0.59 5.97 -4.97 -0.03 0.56 16 14 C 0.50 10.03 7.87 -10.98 -0.09 9.94 16 15 O -0.54 -13.31 16.20 5.55 0.09 -13.22 16 16 N -0.72 -15.21 5.55 -61.47 -0.34 -15.55 16 17 C 0.25 6.74 5.43 -5.20 -0.03 6.71 16 18 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 19 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 22 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H 0.06 0.64 6.21 -51.93 -0.32 0.32 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.61 4.81 -51.93 -0.25 0.36 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.83 6.43 -51.93 -0.33 0.50 16 40 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 41 H 0.35 5.15 5.86 -39.29 -0.23 4.91 16 42 H 0.09 1.24 7.44 -51.93 -0.39 0.85 16 43 H 0.05 0.65 8.06 -51.93 -0.42 0.23 16 44 H 0.39 7.06 8.32 -40.82 -0.34 6.72 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 360.33 15.07 5.43 5.43 Total: -1.00 -31.45 360.33 -8.62 -40.07 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -8.44 Total: 5.84 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -0.44 Total: -2.91 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.25 Total: -51.15 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.45 -8.62 -40.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775708554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.313 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds