Wall clock time and date at job start Tue Mar 31 2020 06:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.53003 * 109.46987 * 239.99591 * 2 1 3 5 5 C 1.52996 * 109.47109 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47082 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.46973 * 300.00053 * 5 4 2 8 8 C 1.52994 * 109.47271 * 60.00205 * 5 4 2 9 9 C 1.52998 * 109.47186 * 300.00082 * 8 5 4 10 10 C 1.52996 * 109.47082 * 59.99803 * 9 8 5 11 11 H 1.08999 * 109.47380 * 60.00461 * 10 9 8 12 12 N 1.46901 * 109.47135 * 180.02562 * 10 9 8 13 13 C 1.46902 * 110.99844 * 274.99848 * 12 10 9 14 14 C 1.50702 * 109.47027 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00262 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99928 * 179.72353 * 14 13 12 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 13 18 18 C 1.50694 * 109.47550 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99963 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00446 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99703 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00230 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46973 * 90.00368 * 22 20 18 24 24 H 1.48497 * 109.46950 * 210.00151 * 22 20 18 25 25 H 1.48504 * 109.47027 * 330.00190 * 22 20 18 26 26 H 1.09005 * 109.46730 * 299.99707 * 1 2 3 27 27 H 1.08997 * 109.46875 * 59.99708 * 1 2 3 28 28 H 1.08994 * 109.47043 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47415 * 300.00362 * 4 2 1 30 30 H 1.09001 * 109.46663 * 60.00114 * 4 2 1 31 31 H 1.09008 * 109.47327 * 60.00021 * 6 5 4 32 32 H 1.09002 * 109.47511 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.47142 * 300.00145 * 6 5 4 34 34 H 1.08996 * 109.47001 * 60.00467 * 7 5 4 35 35 H 1.08999 * 109.46888 * 179.97438 * 7 5 4 36 36 H 1.08997 * 109.47822 * 299.99993 * 7 5 4 37 37 H 1.09007 * 109.46978 * 60.00183 * 8 5 4 38 38 H 1.08999 * 109.47374 * 179.97438 * 8 5 4 39 39 H 1.08998 * 109.47142 * 299.99657 * 9 8 5 40 40 H 1.09001 * 109.46963 * 179.97438 * 9 8 5 41 41 H 1.00902 * 111.00235 * 151.05085 * 12 10 9 42 42 H 1.09004 * 109.47131 * 60.00016 * 13 12 10 43 43 H 1.08994 * 109.47471 * 299.99766 * 13 12 10 44 44 H 0.97000 * 120.00317 * 0.28382 * 16 14 13 45 45 H 1.08998 * 109.47134 * 300.00670 * 17 16 14 46 46 H 1.09002 * 109.46857 * 59.99862 * 17 16 14 47 47 H 0.97000 * 119.99614 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0799 -1.4427 -2.4984 7 6 4.0805 0.7204 -1.2487 8 6 4.0795 -1.4435 0.0003 9 6 3.5695 -0.7222 1.2495 10 6 2.0396 -0.7216 1.2492 11 1 1.6758 -1.7491 1.2491 12 7 1.5499 -0.0286 2.4483 13 6 1.4866 -0.9434 3.5960 14 6 0.9817 -0.1984 4.8049 15 8 0.7018 0.9786 4.7187 16 7 0.8355 -0.8415 5.9802 17 6 0.3391 -0.1188 7.1539 18 6 0.2694 -1.0583 8.3301 19 1 0.5658 -2.0905 8.2150 20 6 -0.1716 -0.6001 9.5534 21 7 -0.5320 0.6570 9.6937 22 14 -0.2572 -1.7645 11.0115 23 1 1.0337 -1.7351 11.7450 24 1 -1.3525 -1.3403 11.9201 25 1 -0.5209 -3.1439 10.5286 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.6767 -1.7490 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.7170 -0.9283 -3.3883 32 1 5.1700 -1.4428 -2.4985 33 1 3.7162 -2.4702 -2.4991 34 1 3.7172 1.2342 -0.3587 35 1 5.1705 0.7200 -1.2480 36 1 3.7176 1.2345 -2.1386 37 1 3.7158 -2.4711 0.0000 38 1 5.1695 -1.4443 0.0003 39 1 3.9333 0.3053 1.2497 40 1 3.9322 -1.2366 2.1395 41 1 0.6524 0.3997 2.2774 42 1 2.4818 -1.3374 3.8020 43 1 0.8099 -1.7667 3.3675 44 1 1.0591 -1.7829 6.0492 45 1 1.0147 0.7043 7.3863 46 1 -0.6552 0.2755 6.9440 47 1 -0.8426 0.9793 10.5542 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775708554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:48 Heat of formation + Delta-G solvation = -92.762380 kcal Electronic energy + Delta-G solvation = -22679.115886 eV Core-core repulsion = 19473.259292 eV Total energy + Delta-G solvation = -3205.856594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.04600 -40.27463 -36.87992 -36.06139 -34.35704 -33.80146 -32.21161 -29.80801 -28.15740 -27.73971 -27.47738 -25.47972 -24.23438 -22.65442 -21.40739 -21.10442 -19.42675 -18.90373 -17.69662 -17.17372 -16.87455 -16.27029 -16.06057 -15.84500 -15.71913 -15.44586 -14.84795 -14.57884 -14.40259 -14.09080 -13.89540 -13.78833 -13.64446 -13.32729 -13.19054 -12.91653 -12.81542 -12.70944 -12.67464 -12.65099 -12.43906 -12.23053 -11.92784 -11.83744 -11.61774 -11.49248 -11.08198 -11.01262 -10.80771 -10.75994 -10.68124 -9.82901 -9.33525 -8.29579 -6.46376 1.42689 1.45338 1.56500 1.78600 2.29172 2.50288 3.05202 3.27477 3.69339 3.77501 3.89983 4.00935 4.07918 4.21377 4.34972 4.36015 4.42257 4.51499 4.51816 4.61685 4.70043 4.75815 4.88073 4.90359 4.94656 5.01416 5.06860 5.10082 5.13215 5.14383 5.22746 5.23767 5.24924 5.28623 5.38509 5.42043 5.48579 5.55018 5.55910 5.68623 5.71649 5.84606 6.09371 6.39672 6.64957 6.94104 7.23196 7.51687 8.82741 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038432 B = 0.002724 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.389637 B =10276.673839 C =10533.704616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.093 4.093 5 C -0.065 4.065 6 C -0.138 4.138 7 C -0.145 4.145 8 C -0.102 4.102 9 C -0.109 4.109 10 C 0.097 3.903 11 H 0.051 0.949 12 N -0.688 5.688 13 C 0.057 3.943 14 C 0.492 3.508 15 O -0.592 6.592 16 N -0.709 5.709 17 C 0.267 3.733 18 C -0.556 4.556 19 H 0.084 0.916 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.986 3.014 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.255 1.255 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.345 0.655 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.408 0.592 45 H -0.015 1.015 46 H -0.013 1.013 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.220 -8.757 -24.820 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.131 4.131 5 C -0.065 4.065 6 C -0.195 4.195 7 C -0.202 4.202 8 C -0.140 4.140 9 C -0.147 4.147 10 C -0.012 4.012 11 H 0.069 0.931 12 N -0.323 5.323 13 C -0.075 4.075 14 C 0.279 3.721 15 O -0.473 6.473 16 N -0.360 5.360 17 C 0.144 3.856 18 C -0.594 4.594 19 H 0.102 0.898 20 C -0.197 4.197 21 N -0.570 5.570 22 Si 0.809 3.191 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.178 1.178 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.166 0.834 42 H 0.134 0.866 43 H 0.099 0.901 44 H 0.244 0.756 45 H 0.003 0.997 46 H 0.004 0.996 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.553 -7.548 -24.575 27.094 hybrid contribution -0.947 -0.644 1.027 1.538 sum 7.606 -8.192 -23.548 26.067 Atomic orbital electron populations 1.21903 0.95316 1.02051 1.01800 1.21279 0.95269 1.00197 0.94249 0.91151 1.21579 0.94469 1.00588 0.96497 1.20544 0.95000 0.95569 0.95369 1.21829 1.01035 1.00189 0.96459 1.21968 1.00803 0.95819 1.01629 1.21565 1.00464 0.98969 0.93026 1.21573 0.94145 1.01071 0.97943 1.21621 0.95699 0.95811 0.88058 0.93082 1.60216 1.35029 1.32818 1.04211 1.21783 1.03257 0.94029 0.88412 1.21453 0.77572 0.87538 0.85507 1.90635 1.52570 1.18426 1.85655 1.46185 1.65441 1.14484 1.09868 1.18511 0.91946 0.92115 0.82996 1.21625 1.45749 0.97361 0.94616 0.89761 1.26095 0.94029 0.97105 1.02507 1.70146 1.43926 1.16869 1.26090 0.85142 0.77940 0.78711 0.77331 1.19601 1.20954 1.17831 0.93833 0.91324 0.92192 0.91448 0.91149 0.92382 0.92488 0.92313 0.93011 0.92715 0.92536 0.91478 0.91473 0.92249 0.92565 0.83351 0.86582 0.90115 0.75619 0.99740 0.99551 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.96 71.98 0.64 -2.04 16 2 C -0.09 -1.61 2.11 -10.79 -0.02 -1.64 16 3 H 0.07 1.45 6.43 -2.39 -0.02 1.43 16 4 C -0.09 -1.28 4.01 30.59 0.12 -1.16 16 5 C -0.06 -0.86 0.77 -52.19 -0.04 -0.90 16 6 C -0.14 -1.49 8.47 71.98 0.61 -0.88 16 7 C -0.15 -2.14 7.78 71.98 0.56 -1.58 16 8 C -0.10 -1.48 4.73 30.59 0.14 -1.34 16 9 C -0.11 -2.09 5.15 30.59 0.16 -1.93 16 10 C 0.10 1.95 1.97 44.91 0.09 2.04 16 11 H 0.05 0.95 7.80 -2.39 -0.02 0.93 16 12 N -0.69 -18.86 5.93 -495.58 -2.94 -21.80 16 13 C 0.06 1.58 5.97 85.56 0.51 2.09 16 14 C 0.49 20.09 7.87 87.66 0.69 20.78 16 15 O -0.59 -30.17 16.20 -3.04 -0.05 -30.22 16 16 N -0.71 -30.36 5.55 -466.79 -2.59 -32.95 16 17 C 0.27 14.94 5.43 85.63 0.46 15.41 16 18 C -0.56 -30.52 9.28 25.60 0.24 -30.28 16 19 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 20 C 0.00 0.12 5.46 84.65 0.46 0.58 16 21 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 22 Si 0.99 42.53 29.54 68.60 2.03 44.56 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 25 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 26 H 0.04 0.91 6.21 -2.38 -0.01 0.90 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 0.93 4.81 -2.39 -0.01 0.91 16 35 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.06 1.31 6.43 -2.39 -0.02 1.30 16 40 H 0.06 1.11 7.45 -2.39 -0.02 1.09 16 41 H 0.34 10.20 5.86 -89.69 -0.53 9.67 16 42 H 0.12 2.75 7.44 -2.38 -0.02 2.74 16 43 H 0.08 1.81 8.06 -2.39 -0.02 1.79 16 44 H 0.41 14.26 8.32 -92.71 -0.77 13.49 16 45 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 46 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 47 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -70.62 360.33 1.01 -69.61 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: -0.35 Total: 28.21 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 4.63 Total: -0.84 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -5.24 Total: -111.33 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.05 Total: -30.22 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -70.62 1.01 -69.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775708554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.152 kcal (2) G-P(sol) polarization free energy of solvation -70.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds