Wall clock time and date at job start Tue Mar 31 2020 06:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.72577 * 2 1 4 4 C 1.54936 * 110.66526 * 236.90327 * 2 1 3 5 5 C 1.54602 * 102.92219 * 204.14811 * 4 2 1 6 6 C 1.53994 * 105.13688 * 21.96394 * 5 4 2 7 7 N 1.47900 * 107.06007 * 1.22054 * 6 5 4 8 8 C 1.46904 * 111.00029 * 214.16305 * 7 6 5 9 9 C 1.52998 * 109.47212 * 65.19901 * 8 7 6 10 10 N 1.46501 * 109.46938 * 185.37695 * 9 8 7 11 11 C 1.34779 * 120.00114 * 179.97438 * 10 9 8 12 12 O 1.21286 * 119.99652 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.99881 * 179.97438 * 11 10 9 14 14 C 1.53008 * 109.46986 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47001 * 179.97438 * 14 13 11 16 16 C 1.53008 * 109.47001 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.46986 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00350 * 0.02562 * 17 16 15 19 19 C 1.37887 * 119.99736 * 180.27412 * 17 16 15 20 20 N 1.31509 * 120.00009 * 179.72564 * 19 17 16 21 21 Si 1.86800 * 120.00001 * 359.73014 * 19 17 16 22 22 H 1.48496 * 109.47333 * 89.99454 * 21 19 17 23 23 H 1.48496 * 109.47046 * 210.00041 * 21 19 17 24 24 H 1.48499 * 109.46777 * 329.99506 * 21 19 17 25 25 H 1.09003 * 109.46697 * 296.90126 * 1 2 3 26 26 H 1.08997 * 109.47264 * 56.90390 * 1 2 3 27 27 H 1.09001 * 109.46965 * 176.90239 * 1 2 3 28 28 H 1.09003 * 110.72325 * 85.79527 * 4 2 1 29 29 H 1.09003 * 110.72780 * 322.50774 * 4 2 1 30 30 H 1.08992 * 110.31357 * 263.04421 * 5 4 2 31 31 H 1.09002 * 110.30592 * 140.87082 * 5 4 2 32 32 H 1.09000 * 109.91440 * 241.86838 * 6 5 4 33 33 H 1.08994 * 110.08651 * 120.66666 * 6 5 4 34 34 H 1.08996 * 109.46876 * 305.19637 * 8 7 6 35 35 H 1.09000 * 109.46995 * 185.19760 * 8 7 6 36 36 H 1.08999 * 109.47269 * 65.37685 * 9 8 7 37 37 H 1.09001 * 109.47244 * 305.37542 * 9 8 7 38 38 H 0.97001 * 120.00042 * 359.97438 * 10 9 8 39 39 H 1.08999 * 109.47233 * 60.00520 * 13 11 10 40 40 H 1.09003 * 109.47606 * 300.00140 * 13 11 10 41 41 H 1.08999 * 109.46880 * 60.00096 * 14 13 11 42 42 H 1.08996 * 109.46946 * 300.00702 * 14 13 11 43 43 H 1.08999 * 109.47198 * 60.00324 * 15 14 13 44 44 H 1.08996 * 109.47871 * 300.00168 * 15 14 13 45 45 H 1.08999 * 109.46880 * 60.00129 * 16 15 14 46 46 H 1.09003 * 109.46893 * 300.00402 * 16 15 14 47 47 H 0.97002 * 120.00537 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0194 0.0000 4 6 2.0768 -0.7916 -1.2145 5 6 3.4853 -1.2197 -0.7423 6 6 3.4279 -1.1648 0.7956 7 7 2.0543 -0.7590 1.1643 8 6 2.0581 0.0719 2.3757 9 6 2.7816 1.3891 2.0885 10 7 2.8984 2.1623 3.3274 11 6 3.5051 3.3657 3.3160 12 8 3.9540 3.8088 2.2801 13 6 3.6248 4.1612 4.5903 14 6 4.3484 5.4784 4.3032 15 6 4.4693 6.2864 5.5967 16 6 5.1935 7.6033 5.3097 17 6 5.3131 8.3988 6.5840 18 1 4.9131 8.0045 7.5063 19 6 5.9288 9.6325 6.5712 20 7 6.0284 10.3292 7.6822 21 14 6.6213 10.3144 4.9759 22 1 5.5750 11.1059 4.2804 23 1 7.7854 11.1867 5.2745 24 1 7.0542 9.1923 4.1048 25 1 -0.3633 0.4650 0.9165 26 1 -0.3633 0.5611 -0.8609 27 1 -0.3633 -1.0262 -0.0555 28 1 2.1430 -0.1513 -2.0941 29 1 1.4561 -1.6644 -1.4172 30 1 4.2374 -0.5259 -1.1178 31 1 3.7044 -2.2338 -1.0767 32 1 4.1441 -0.4323 1.1679 33 1 3.6498 -2.1466 1.2137 34 1 2.5721 -0.4576 3.1778 35 1 1.0314 0.2796 2.6771 36 1 2.2152 1.9623 1.3546 37 1 3.7766 1.1790 1.6961 38 1 2.5391 1.8081 4.1559 39 1 4.1906 3.5881 5.3247 40 1 2.6296 4.3718 4.9821 41 1 3.7822 6.0514 3.5689 42 1 5.3435 5.2683 3.9111 43 1 5.0353 5.7136 6.3313 44 1 3.4740 6.4965 5.9883 45 1 4.6279 8.1763 4.5750 46 1 6.1888 7.3927 4.9184 47 1 6.4612 11.1973 7.6732 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807272259.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:26 Heat of formation + Delta-G solvation = -58.751298 kcal Electronic energy + Delta-G solvation = -21769.714736 eV Core-core repulsion = 18565.332974 eV Total energy + Delta-G solvation = -3204.381763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.27804 -39.36552 -35.50917 -34.89676 -32.76296 -32.45097 -31.82359 -30.25417 -28.05019 -26.07995 -25.60853 -23.68330 -22.05591 -21.37934 -20.38616 -20.02579 -19.86788 -17.16814 -16.84121 -16.57664 -16.11591 -15.72157 -15.53884 -15.07230 -14.88697 -14.20227 -14.06298 -13.88262 -13.46842 -13.06272 -12.84114 -12.64500 -12.58215 -12.37242 -12.21687 -12.04654 -11.90545 -11.74584 -11.65343 -11.36133 -11.14103 -11.10890 -10.89629 -10.73667 -10.53709 -10.01230 -9.82361 -9.64558 -9.44103 -9.23722 -9.11615 -8.83656 -8.48967 -6.00100 -3.97484 2.64512 2.96651 3.35598 3.42525 3.48705 3.55585 4.16826 4.22932 4.42945 4.50481 4.57298 4.59546 4.80281 4.82242 4.96094 5.02246 5.08477 5.21925 5.22693 5.28272 5.31533 5.34943 5.35630 5.45038 5.51066 5.56331 5.60841 5.67216 5.77679 5.79966 5.88992 6.03130 6.15193 6.19135 6.41409 6.44028 6.56289 6.68548 6.82503 6.99563 7.33916 7.38678 7.51443 7.85272 8.17966 8.58831 9.04904 9.63260 11.13361 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036424 B = 0.002259 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.530201 B =12390.359867 C =12632.581588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.046 3.954 3 H 0.065 0.935 4 C -0.119 4.119 5 C -0.133 4.133 6 C 0.026 3.974 7 N -0.504 5.504 8 C 0.034 3.966 9 C 0.080 3.920 10 N -0.735 5.735 11 C 0.511 3.489 12 O -0.538 6.538 13 C -0.138 4.138 14 C -0.106 4.106 15 C -0.102 4.102 16 C -0.016 4.016 17 C -0.519 4.519 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.401 0.599 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.011 0.989 46 H 0.015 0.985 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.427 -27.015 -15.063 32.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.062 4.062 3 H 0.083 0.917 4 C -0.157 4.157 5 C -0.171 4.171 6 C -0.101 4.101 7 N -0.228 5.228 8 C -0.095 4.095 9 C -0.046 4.046 10 N -0.389 5.389 11 C 0.299 3.701 12 O -0.414 6.414 13 C -0.178 4.178 14 C -0.144 4.144 15 C -0.140 4.140 16 C -0.053 4.053 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.137 4.137 20 N -0.545 5.545 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.235 0.765 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.029 0.971 46 H 0.034 0.966 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.352 -26.992 -15.639 32.868 hybrid contribution 0.760 1.024 -0.416 1.342 sum -9.592 -25.968 -16.055 32.002 Atomic orbital electron populations 1.21662 0.93531 1.02415 1.01692 1.22986 0.96319 0.96657 0.90196 0.91708 1.22540 0.95980 1.00131 0.97072 1.22393 0.97599 1.02187 0.94896 1.22959 0.89944 1.01415 0.95807 1.65017 1.18858 1.36047 1.02832 1.22503 1.01525 0.91220 0.94262 1.22076 1.01273 0.93162 0.88065 1.45992 1.61310 1.20100 1.11528 1.21130 0.76556 0.80738 0.91689 1.90700 1.47251 1.69446 1.33981 1.21776 1.03501 0.97930 0.94638 1.21481 1.00302 0.93170 0.99463 1.21476 1.00577 0.97127 0.94831 1.19579 0.95408 0.92928 0.97393 1.21183 1.37465 1.02183 0.94872 0.91103 1.25050 0.95638 0.96813 0.96168 1.69918 1.44598 1.13219 1.26777 0.86767 0.78889 0.79197 0.84409 1.20327 1.21456 1.18919 0.92616 0.92172 0.91831 0.90977 0.90625 0.91344 0.90895 0.92953 0.90128 0.89890 0.89645 0.91262 0.91525 0.76490 0.88948 0.88930 0.91838 0.91840 0.92831 0.92847 0.97069 0.96635 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.51 37.16 0.35 -0.51 16 2 C 0.05 0.33 2.68 -65.78 -0.18 0.16 16 3 H 0.07 0.54 5.49 -51.93 -0.29 0.26 16 4 C -0.12 -0.75 6.50 -24.87 -0.16 -0.91 16 5 C -0.13 -0.84 6.93 -25.37 -0.18 -1.01 16 6 C 0.03 0.19 6.46 -2.75 -0.02 0.17 16 7 N -0.50 -3.73 5.23 -222.63 -1.16 -4.89 16 8 C 0.03 0.23 5.43 -3.82 -0.02 0.21 16 9 C 0.08 0.72 4.82 -4.04 -0.02 0.70 16 10 N -0.74 -6.95 5.56 -60.29 -0.33 -7.29 16 11 C 0.51 6.86 7.83 -10.99 -0.09 6.77 16 12 O -0.54 -9.58 15.98 5.55 0.09 -9.49 16 13 C -0.14 -1.74 5.70 -27.88 -0.16 -1.90 16 14 C -0.11 -1.80 4.50 -26.73 -0.12 -1.92 16 15 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 16 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 17 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 18 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 19 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.91 -28.49 13.96 55.43 0.77 -27.72 16 21 Si 0.88 22.49 27.46 -169.99 -4.67 17.83 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.26 -6.57 6.55 56.52 0.37 -6.20 16 25 H 0.05 0.36 7.58 -51.93 -0.39 -0.03 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.46 8.02 -51.93 -0.42 0.04 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.40 5.80 -51.93 -0.30 0.10 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.50 8.13 -51.93 -0.42 0.08 16 35 H 0.09 0.53 7.61 -51.93 -0.40 0.14 16 36 H 0.07 0.72 6.26 -51.93 -0.33 0.40 16 37 H 0.07 0.70 6.12 -51.93 -0.32 0.38 16 38 H 0.40 2.55 8.47 -40.82 -0.35 2.21 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 42 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.01 0.27 7.56 -51.93 -0.39 -0.12 16 46 H 0.02 0.39 7.21 -51.93 -0.37 0.01 16 47 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -34.21 365.77 -9.68 -43.89 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -8.62 Total: -3.22 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -1.26 Total: -14.62 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: -0.73 Total: -39.90 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.83 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.21 -9.68 -43.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807272259.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.858 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds