Wall clock time and date at job start Tue Mar 31 2020 06:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.01265 * 2 1 4 4 C 1.54315 * 109.89010 * 121.12177 * 2 1 3 5 5 C 1.55140 * 103.01971 * 141.68675 * 4 2 1 6 6 C 1.54905 * 101.65254 * 324.34577 * 5 4 2 7 7 N 1.47440 * 109.88568 * 238.89284 * 2 1 3 8 8 C 1.46906 * 111.00047 * 3.84700 * 7 2 1 9 9 C 1.52999 * 109.46887 * 172.10487 * 8 7 2 10 10 N 1.46509 * 109.46952 * 180.02562 * 9 8 7 11 11 C 1.34771 * 119.99952 * 180.02562 * 10 9 8 12 12 O 1.21285 * 120.00420 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00035 * 179.97438 * 11 10 9 14 14 C 1.53001 * 109.47678 * 180.02562 * 13 11 10 15 15 C 1.52991 * 109.47540 * 180.02562 * 14 13 11 16 16 C 1.53007 * 109.47288 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47125 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00218 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99796 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00143 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99948 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47333 * 59.99520 * 21 19 17 23 23 H 1.48498 * 109.47396 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47127 * 299.99706 * 21 19 17 25 25 H 1.08991 * 109.47553 * 175.68012 * 1 2 3 26 26 H 1.09005 * 109.46746 * 295.68563 * 1 2 3 27 27 H 1.08998 * 109.47250 * 55.67342 * 1 2 3 28 28 H 1.08997 * 110.70671 * 260.06977 * 4 2 1 29 29 H 1.09002 * 110.70627 * 23.30463 * 4 2 1 30 30 H 1.08998 * 110.99412 * 82.43873 * 5 4 2 31 31 H 1.09001 * 110.98804 * 206.22047 * 5 4 2 32 32 H 1.09002 * 110.37648 * 278.24109 * 6 5 4 33 33 H 1.09001 * 110.37333 * 155.90159 * 6 5 4 34 34 H 1.08995 * 109.47362 * 292.10622 * 8 7 2 35 35 H 1.09000 * 109.46724 * 52.11277 * 8 7 2 36 36 H 1.08997 * 109.47634 * 299.99879 * 9 8 7 37 37 H 1.08993 * 109.47398 * 60.00553 * 9 8 7 38 38 H 0.96995 * 119.99498 * 0.02562 * 10 9 8 39 39 H 1.09007 * 109.47356 * 300.00361 * 13 11 10 40 40 H 1.09004 * 109.47266 * 59.99936 * 13 11 10 41 41 H 1.09007 * 109.47011 * 300.00559 * 14 13 11 42 42 H 1.09004 * 109.46835 * 59.99659 * 14 13 11 43 43 H 1.09005 * 109.47027 * 299.99688 * 15 14 13 44 44 H 1.08995 * 109.47443 * 60.00114 * 15 14 13 45 45 H 1.08995 * 109.46832 * 299.99728 * 16 15 14 46 46 H 1.08995 * 109.46925 * 59.99626 * 16 15 14 47 47 H 0.97003 * 119.99979 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0550 -0.7500 1.2422 5 6 3.2892 -1.5135 0.6938 6 6 2.8188 -1.8833 -0.7350 7 7 2.0315 -0.7163 -1.1871 8 6 0.9238 -1.1338 -2.0571 9 6 1.4860 -1.6948 -3.3648 10 7 0.3812 -2.1106 -4.2326 11 6 0.6391 -2.6391 -5.4453 12 8 1.7857 -2.7710 -5.8180 13 6 -0.4972 -3.0673 -6.3377 14 6 0.0649 -3.6294 -7.6450 15 6 -1.0887 -4.0635 -8.5513 16 6 -0.5266 -4.6262 -9.8584 17 6 -1.6629 -5.0544 -10.7508 18 1 -2.6839 -4.9374 -10.4188 19 6 -1.3991 -5.5966 -11.9907 20 7 -0.1558 -5.7396 -12.3948 21 14 -2.8076 -6.1267 -13.0972 22 1 -3.6716 -4.9560 -13.3940 23 1 -2.2621 -6.6730 -14.3657 24 1 -3.6091 -7.1722 -12.4117 25 1 -0.3634 -1.0246 -0.0774 26 1 -0.3633 0.4455 0.9262 27 1 -0.3633 0.5795 -0.8487 28 1 2.3515 -0.0467 2.0203 29 1 1.3056 -1.4473 1.6167 30 1 4.1658 -0.8666 0.6612 31 1 3.4885 -2.4083 1.2836 32 1 2.1938 -2.7759 -0.7097 33 1 3.6771 -2.0383 -1.3888 34 1 0.3369 -1.9025 -1.5545 35 1 0.2884 -0.2750 -2.2736 36 1 2.0728 -0.9261 -3.8675 37 1 2.1213 -2.5535 -3.1484 38 1 -0.5357 -2.0054 -3.9344 39 1 -1.0844 -3.8358 -5.8349 40 1 -1.1325 -2.2085 -6.5545 41 1 0.6524 -2.8612 -8.1480 42 1 0.6999 -4.4883 -7.4279 43 1 -1.6765 -4.8316 -8.0485 44 1 -1.7234 -3.2044 -8.7684 45 1 0.0614 -3.8585 -10.3613 46 1 0.1078 -5.4854 -9.6409 47 1 0.0298 -6.1207 -13.2673 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807272260.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:28 Heat of formation + Delta-G solvation = -60.778374 kcal Electronic energy + Delta-G solvation = -21498.494751 eV Core-core repulsion = 18294.025088 eV Total energy + Delta-G solvation = -3204.469663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.16843 -39.40722 -35.45847 -34.74324 -32.73867 -32.48174 -31.84798 -29.86952 -27.98875 -25.97636 -25.49705 -23.42493 -22.17141 -21.45957 -20.46158 -19.94574 -19.57939 -17.06298 -16.77060 -16.15760 -16.03158 -15.95256 -15.50533 -15.15259 -14.49221 -14.38762 -14.12001 -13.87193 -13.47267 -13.29337 -12.82229 -12.65867 -12.55751 -12.10764 -11.96469 -11.74200 -11.63681 -11.53442 -11.50351 -11.48134 -11.20997 -11.06919 -10.94216 -10.51535 -10.48864 -10.37299 -9.78250 -9.57639 -9.18925 -9.12653 -8.96028 -8.75012 -8.27705 -5.92496 -3.95039 2.78225 2.97150 3.36985 3.41281 3.43534 3.69071 4.13103 4.21739 4.37198 4.51029 4.62481 4.66410 4.78077 4.88946 4.94520 5.00255 5.06948 5.08872 5.16701 5.34351 5.36754 5.40349 5.42853 5.49301 5.52711 5.56023 5.59055 5.70457 5.75609 5.84931 5.91722 6.17939 6.31054 6.35120 6.53385 6.58485 6.63175 6.88024 7.06136 7.23496 7.46809 7.76870 7.93548 8.09118 8.31502 8.50774 9.12501 9.68299 11.18763 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.053291 B = 0.001987 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.290953 B =14088.911381 C =14414.351178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.068 3.932 3 H 0.088 0.912 4 C -0.139 4.139 5 C -0.131 4.131 6 C 0.037 3.963 7 N -0.522 5.522 8 C 0.038 3.962 9 C 0.121 3.879 10 N -0.740 5.740 11 C 0.512 3.488 12 O -0.534 6.534 13 C -0.138 4.138 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.685 11.691 30.379 32.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.039 4.039 3 H 0.106 0.894 4 C -0.178 4.178 5 C -0.169 4.169 6 C -0.090 4.090 7 N -0.246 5.246 8 C -0.091 4.091 9 C -0.003 4.003 10 N -0.394 5.394 11 C 0.299 3.701 12 O -0.410 6.410 13 C -0.178 4.178 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.231 0.769 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.962 11.863 29.648 32.070 hybrid contribution -1.735 -0.792 -0.001 1.908 sum 1.226 11.071 29.646 31.670 Atomic orbital electron populations 1.22392 0.95741 1.02265 1.02566 1.22447 0.93931 0.98948 0.88616 0.89404 1.22885 0.97754 0.99454 0.97670 1.22702 0.98168 1.00466 0.95522 1.23154 0.98051 0.91939 0.95871 1.63614 1.21476 1.23159 1.16392 1.22530 0.93452 0.99908 0.93188 1.21215 0.89575 0.99862 0.89686 1.46017 1.09747 1.65699 1.17888 1.21083 0.91437 0.76343 0.81207 1.90713 1.22965 1.53812 1.73466 1.21791 0.96460 1.02447 0.97117 1.21451 0.99023 1.00994 0.92682 1.21650 0.96131 0.99441 0.97571 1.19096 0.96185 0.96024 0.90447 1.21248 0.93057 1.40702 1.00894 0.92818 1.25045 0.95458 0.96035 0.98068 1.69964 1.18131 1.45244 1.20104 0.86668 0.82517 0.78899 0.79937 1.20308 1.21328 1.20312 0.92240 0.91966 0.91676 0.90681 0.91355 0.90501 0.90755 0.93370 0.89781 0.93844 0.89635 0.90780 0.91798 0.76854 0.89214 0.89146 0.91788 0.91827 0.93515 0.93481 0.96571 0.96593 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 7.83 37.16 0.29 -0.58 16 2 C 0.07 0.42 4.02 -66.73 -0.27 0.15 16 3 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.14 -0.73 6.47 -24.91 -0.16 -0.89 16 5 C -0.13 -0.75 7.08 -24.59 -0.17 -0.92 16 6 C 0.04 0.27 5.68 -2.30 -0.01 0.26 16 7 N -0.52 -4.02 5.18 -223.34 -1.16 -5.18 16 8 C 0.04 0.27 3.78 -3.82 -0.01 0.26 16 9 C 0.12 1.21 5.69 -4.04 -0.02 1.19 16 10 N -0.74 -7.57 5.56 -60.29 -0.33 -7.91 16 11 C 0.51 7.33 7.83 -10.99 -0.09 7.25 16 12 O -0.53 -10.11 15.98 5.55 0.09 -10.02 16 13 C -0.14 -1.87 5.70 -27.89 -0.16 -2.03 16 14 C -0.10 -1.90 4.50 -26.74 -0.12 -2.02 16 15 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 16 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 17 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 21 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H 0.06 0.31 6.60 -51.93 -0.34 -0.03 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.33 6.72 -51.93 -0.35 -0.02 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.35 7.85 -51.93 -0.41 -0.06 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.04 0.29 6.64 -51.93 -0.35 -0.05 16 35 H 0.09 0.56 6.32 -51.93 -0.33 0.24 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.72 7.42 -51.93 -0.39 0.33 16 38 H 0.40 2.79 8.47 -40.82 -0.35 2.45 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 42 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 369.92 15.07 5.57 5.57 Total: -1.00 -34.10 369.92 -10.31 -44.41 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -8.78 Total: -3.57 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -1.42 Total: -13.34 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: -0.76 Total: -40.12 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.10 -10.31 -44.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807272260.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.370 kcal (2) G-P(sol) polarization free energy of solvation -34.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds