Wall clock time and date at job start Tue Mar 31 2020 06:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 N 1.46898 * 109.47374 * 239.99989 * 2 1 3 5 5 C 1.46900 * 111.00190 * 85.00128 * 4 2 1 6 6 C 1.50698 * 109.47212 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99914 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00114 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00281 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47349 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99807 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00255 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00386 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99717 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.46973 * 90.00101 * 14 12 10 16 16 H 1.48494 * 109.47060 * 209.99536 * 14 12 10 17 17 H 1.48495 * 109.47307 * 329.99952 * 14 12 10 18 18 C 1.52997 * 109.47092 * 119.99853 * 2 1 3 19 19 H 1.09002 * 109.47497 * 59.99850 * 18 2 1 20 20 C 1.53002 * 109.47415 * 180.02562 * 18 2 1 21 21 C 1.53000 * 109.47233 * 180.02562 * 20 18 2 22 22 C 1.52997 * 109.47060 * 299.99657 * 21 20 18 23 23 C 1.52999 * 109.47317 * 59.99960 * 22 21 20 24 24 H 1.09002 * 109.46716 * 60.00091 * 23 22 21 25 25 C 1.53002 * 109.47628 * 180.02562 * 23 22 21 26 26 C 1.52997 * 109.47232 * 300.00075 * 18 2 1 27 27 H 1.09000 * 109.46497 * 60.00247 * 1 2 3 28 28 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46876 * 299.99857 * 1 2 3 30 30 H 1.00903 * 110.99927 * 208.95821 * 4 2 1 31 31 H 1.09005 * 109.46934 * 299.99903 * 5 4 2 32 32 H 1.08993 * 109.47226 * 60.00131 * 5 4 2 33 33 H 0.97004 * 119.99984 * 359.97438 * 8 6 5 34 34 H 1.09005 * 109.46668 * 299.99608 * 9 8 6 35 35 H 1.08993 * 109.47174 * 59.99642 * 9 8 6 36 36 H 0.96996 * 119.99914 * 179.97438 * 13 12 10 37 37 H 1.08992 * 109.47063 * 59.99950 * 20 18 2 38 38 H 1.09004 * 109.46733 * 299.99664 * 20 18 2 39 39 H 1.09002 * 109.47398 * 59.99826 * 21 20 18 40 40 H 1.09001 * 109.47194 * 180.02562 * 21 20 18 41 41 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 42 42 H 1.09002 * 109.47153 * 300.00319 * 22 21 20 43 43 H 1.09001 * 109.47142 * 180.02562 * 25 23 22 44 44 H 1.08996 * 109.46698 * 300.00222 * 25 23 22 45 45 H 1.09002 * 109.46838 * 59.99718 * 25 23 22 46 46 H 1.09002 * 109.47153 * 299.99992 * 26 18 2 47 47 H 1.09001 * 109.47289 * 60.00075 * 26 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0826 0.2226 -2.3469 6 6 2.5875 -0.5218 -3.5560 7 8 2.8679 -1.6987 -3.4701 8 7 2.7285 0.1204 -4.7324 9 6 3.2188 -0.6034 -5.9080 10 6 3.2834 0.3354 -7.0851 11 1 2.9883 1.3678 -6.9692 12 6 3.7192 -0.1237 -8.3099 13 7 3.7751 0.6954 -9.3373 14 14 4.2290 -1.9096 -8.5105 15 1 3.0488 -2.7199 -8.9053 16 1 5.2731 -2.0113 -9.5614 17 1 4.7701 -2.4174 -7.2242 18 6 2.0400 -0.7212 1.2492 19 1 1.6767 -1.7489 1.2493 20 6 3.5700 -0.7207 1.2496 21 6 4.0800 -1.4425 2.4986 22 6 3.5695 -0.7221 3.7481 23 6 2.0395 -0.7225 3.7478 24 1 1.6765 -1.7503 3.7472 25 6 1.5289 -0.0015 4.9970 26 6 1.5300 0.0000 2.4984 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.9174 -1.1205 -1.0286 31 1 1.0872 0.6163 -2.5526 32 1 2.7589 1.0461 -2.1182 33 1 2.5046 1.0617 -4.8010 34 1 4.2139 -0.9982 -5.7026 35 1 2.5416 -1.4262 -6.1366 36 1 4.0821 0.3724 -10.1989 37 1 3.9330 0.3070 1.2498 38 1 3.9337 -1.2344 0.3597 39 1 3.7170 -2.4703 2.4980 40 1 5.1700 -1.4417 2.4991 41 1 3.9331 -1.2359 4.6379 42 1 3.9325 0.3057 3.7487 43 1 0.4389 -0.0023 4.9969 44 1 1.8922 -0.5153 5.8869 45 1 1.8920 1.0263 4.9972 46 1 1.8933 1.0277 2.4984 47 1 0.4400 0.0000 2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832691234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:47 Heat of formation + Delta-G solvation = -73.431979 kcal Electronic energy + Delta-G solvation = -22397.273231 eV Core-core repulsion = 19192.254867 eV Total energy + Delta-G solvation = -3205.018365 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.80330 -38.82566 -36.33289 -34.24920 -32.69772 -32.35870 -32.01715 -29.03952 -28.32167 -26.80214 -25.69022 -23.28449 -21.82946 -21.73625 -20.18746 -20.08192 -19.75081 -17.37862 -16.43455 -15.80814 -15.68735 -15.36712 -14.90548 -14.68935 -14.40660 -14.09640 -13.94643 -13.78910 -13.45442 -13.15267 -12.93486 -12.70200 -12.60460 -12.43234 -12.21981 -11.99223 -11.78150 -11.61698 -11.49464 -11.36052 -11.20493 -11.00566 -10.96833 -10.75040 -10.61670 -10.27418 -10.09708 -9.96431 -9.48819 -9.15608 -8.77121 -8.38264 -8.10992 -6.21027 -4.23176 3.25609 3.29287 3.34159 3.42973 3.72900 4.30683 4.34213 4.39968 4.41910 4.48391 4.76559 4.91950 4.96346 5.08089 5.14260 5.16251 5.21616 5.32261 5.34230 5.35536 5.39224 5.44257 5.46217 5.53274 5.57946 5.58862 5.65558 5.73215 5.80134 5.84547 5.93411 5.98230 5.99664 6.04562 6.09535 6.22559 6.30754 6.79967 7.01380 7.08761 7.25819 7.39619 7.44136 8.15554 8.53693 8.76221 8.97283 9.39389 10.90911 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036779 B = 0.002726 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.121952 B =10267.777234 C =10637.234819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.088 3.912 3 H 0.042 0.958 4 N -0.670 5.670 5 C 0.041 3.959 6 C 0.498 3.502 7 O -0.546 6.546 8 N -0.708 5.708 9 C 0.221 3.779 10 C -0.543 4.543 11 H 0.079 0.921 12 C 0.077 3.923 13 N -0.893 5.893 14 Si 0.878 3.122 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.261 1.261 18 C -0.088 4.088 19 H 0.080 0.920 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.092 4.092 24 H 0.069 0.931 25 C -0.147 4.147 26 C -0.107 4.107 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.350 0.650 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.396 0.604 34 H 0.024 0.976 35 H 0.020 0.980 36 H 0.267 0.733 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.866 0.536 27.444 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 H 0.060 0.940 4 N -0.305 5.305 5 C -0.092 4.092 6 C 0.283 3.717 7 O -0.425 6.425 8 N -0.357 5.357 9 C 0.099 3.901 10 C -0.581 4.581 11 H 0.097 0.903 12 C -0.127 4.127 13 N -0.530 5.530 14 Si 0.704 3.296 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.185 1.185 18 C -0.106 4.106 19 H 0.098 0.902 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.111 4.111 24 H 0.088 0.912 25 C -0.205 4.205 26 C -0.145 4.145 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.173 0.827 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.229 0.771 34 H 0.042 0.958 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.209 -0.552 27.097 27.427 hybrid contribution 0.929 0.218 -0.223 0.980 sum -3.280 -0.334 26.874 27.076 Atomic orbital electron populations 1.21863 0.94603 1.02478 1.01060 1.21560 0.95964 0.95635 0.88974 0.93985 1.60223 1.35103 1.32042 1.03131 1.21862 1.02122 0.94351 0.90865 1.20440 0.78852 0.87830 0.84598 1.90650 1.50844 1.15977 1.84984 1.46170 1.65536 1.14045 1.09977 1.19469 0.94432 0.93202 0.82979 1.21100 1.46335 0.97863 0.92813 0.90277 1.24804 0.94470 0.97979 0.95435 1.69880 1.46402 1.35480 1.01255 0.86803 0.79062 0.85044 0.78699 1.19829 1.20928 1.18516 1.21309 0.95109 1.00608 0.93606 0.90186 1.21664 0.95310 1.00769 0.98180 1.21499 1.00171 0.99530 0.94336 1.21600 0.95156 1.00686 0.97700 1.21147 0.95457 0.99837 0.94654 0.91224 1.21831 1.00900 1.00420 0.97313 1.21679 1.00564 0.99071 0.93184 0.92808 0.91921 0.92472 0.82722 0.88504 0.92801 0.77100 0.95813 0.96177 0.92274 0.92122 0.91586 0.91852 0.92043 0.92267 0.92134 0.92731 0.92870 0.92793 0.92074 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.06 37.16 0.34 -1.04 16 2 C 0.09 0.90 2.23 -67.71 -0.15 0.75 16 3 H 0.04 0.42 7.80 -51.93 -0.40 0.02 16 4 N -0.67 -8.96 5.93 -107.99 -0.64 -9.60 16 5 C 0.04 0.56 5.97 -4.98 -0.03 0.54 16 6 C 0.50 9.57 7.87 -10.99 -0.09 9.48 16 7 O -0.55 -12.61 16.20 5.56 0.09 -12.52 16 8 N -0.71 -14.43 5.55 -61.47 -0.34 -14.78 16 9 C 0.22 5.52 4.50 -5.19 -0.02 5.49 16 10 C -0.54 -15.01 9.83 -34.44 -0.34 -15.35 16 11 H 0.08 2.27 7.84 -52.48 -0.41 1.85 16 12 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 13 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 14 Si 0.88 21.65 27.47 -169.99 -4.67 16.99 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 18 C -0.09 -0.78 1.91 -90.62 -0.17 -0.96 16 19 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 20 C -0.12 -1.09 4.97 -26.73 -0.13 -1.22 16 21 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 22 C -0.11 -0.81 5.20 -26.73 -0.14 -0.95 16 23 C -0.09 -0.64 2.72 -90.59 -0.25 -0.89 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 C -0.15 -0.90 9.19 37.16 0.34 -0.56 16 26 C -0.11 -0.80 4.13 -26.71 -0.11 -0.91 16 27 H 0.05 0.54 7.45 -51.93 -0.39 0.16 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 30 H 0.35 4.89 5.87 -39.29 -0.23 4.66 16 31 H 0.10 1.22 7.44 -51.93 -0.39 0.83 16 32 H 0.05 0.65 8.05 -51.93 -0.42 0.23 16 33 H 0.40 7.05 8.32 -40.82 -0.34 6.71 16 34 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 35 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.67 6.21 -51.93 -0.32 0.35 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -31.50 361.46 -8.92 -40.42 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -8.58 Total: 4.52 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.01 Total: -4.62 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.21 Total: -50.24 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.50 -8.92 -40.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832691234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.008 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds