Wall clock time and date at job start Tue Mar 31 2020 06:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47593 * 2 1 4 4 N 1.46903 * 109.46794 * 240.00370 * 2 1 3 5 5 C 1.46901 * 111.00234 * 84.99933 * 4 2 1 6 6 C 1.50696 * 109.47303 * 179.97438 * 5 4 2 7 7 O 1.21284 * 120.00096 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99838 * 180.02562 * 6 5 4 9 9 C 1.46506 * 120.00072 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47289 * 179.97438 * 9 8 6 11 11 H 1.07994 * 119.99399 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99789 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00144 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99733 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46632 * 90.00476 * 14 12 10 16 16 H 1.48496 * 109.46690 * 210.00029 * 14 12 10 17 17 H 1.48498 * 109.47171 * 330.00226 * 14 12 10 18 18 C 1.53004 * 109.47317 * 120.00490 * 2 1 3 19 19 H 1.08999 * 109.46957 * 59.99722 * 18 2 1 20 20 C 1.52999 * 109.47154 * 179.97438 * 18 2 1 21 21 C 1.52990 * 109.47152 * 179.97438 * 20 18 2 22 22 C 1.52998 * 109.47272 * 300.00342 * 21 20 18 23 23 C 1.52999 * 109.47311 * 59.99756 * 22 21 20 24 24 H 1.09004 * 109.47054 * 180.02562 * 23 22 21 25 25 C 1.52995 * 109.46904 * 60.00300 * 23 22 21 26 26 C 1.52996 * 109.46919 * 300.00099 * 23 22 21 27 27 H 1.09004 * 109.47181 * 299.99895 * 1 2 3 28 28 H 1.09001 * 109.47593 * 59.99169 * 1 2 3 29 29 H 1.08995 * 109.47593 * 179.97438 * 1 2 3 30 30 H 1.00901 * 111.00243 * 321.04784 * 4 2 1 31 31 H 1.09004 * 109.46970 * 59.99869 * 5 4 2 32 32 H 1.09001 * 109.47332 * 300.00277 * 5 4 2 33 33 H 0.97001 * 120.00676 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.47060 * 300.00359 * 9 8 6 35 35 H 1.09004 * 109.47073 * 59.99848 * 9 8 6 36 36 H 0.96997 * 119.99752 * 179.97438 * 13 12 10 37 37 H 1.09004 * 109.47272 * 300.00467 * 20 18 2 38 38 H 1.09007 * 109.46742 * 59.99694 * 20 18 2 39 39 H 1.09003 * 109.47415 * 179.97438 * 21 20 18 40 40 H 1.09007 * 109.47394 * 60.00281 * 21 20 18 41 41 H 1.08999 * 109.47046 * 299.99657 * 22 21 20 42 42 H 1.09004 * 109.47203 * 179.97438 * 22 21 20 43 43 H 1.09004 * 109.47158 * 299.99806 * 25 23 22 44 44 H 1.08996 * 109.47440 * 60.00268 * 25 23 22 45 45 H 1.09007 * 109.47166 * 180.02562 * 25 23 22 46 46 H 1.08998 * 109.47551 * 299.99611 * 26 23 22 47 47 H 1.09007 * 109.46797 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0195 -0.6924 -1.1995 5 6 2.0823 0.2227 -2.3470 6 6 2.5883 -0.5214 -3.5558 7 8 2.8685 -1.6983 -3.4702 8 7 2.7293 0.1211 -4.7322 9 6 3.2207 -0.6024 -5.9076 10 6 3.2852 0.3365 -7.0847 11 1 2.9901 1.3689 -6.9686 12 6 3.7219 -0.1223 -8.3093 13 7 4.0817 -1.3794 -8.4504 14 14 3.8011 1.0413 -9.7685 15 1 5.1369 1.6885 -9.8133 16 1 3.5785 0.2781 -11.0227 17 1 2.7511 2.0821 -9.6293 18 6 2.0400 -0.7214 1.2492 19 1 1.6766 -1.7490 1.2491 20 6 3.5700 -0.7219 1.2488 21 6 4.0800 -1.4426 2.4982 22 6 3.5705 -0.7207 3.7472 23 6 2.0405 -0.7201 3.7476 24 1 1.6776 -0.2053 4.6372 25 6 1.5301 -2.1624 3.7484 26 6 1.5306 0.0007 2.4982 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.4494 -1.4978 -1.4102 31 1 2.7587 1.0463 -2.1183 32 1 1.0869 0.6165 -2.5525 33 1 2.5049 1.0622 -4.8009 34 1 4.2159 -0.9966 -5.7018 35 1 2.5440 -1.4257 -6.1366 36 1 4.3885 -1.7023 -9.3120 37 1 3.9330 -1.2359 0.3587 38 1 3.9336 0.3057 1.2486 39 1 5.1700 -1.4434 2.4978 40 1 3.7164 -2.4703 2.4989 41 1 3.9342 0.3069 3.7467 42 1 3.9335 -1.2345 4.6374 43 1 1.8930 -2.6768 2.8586 44 1 1.8934 -2.6759 4.6386 45 1 0.4400 -2.1621 3.7482 46 1 1.8942 1.0282 2.4976 47 1 0.4405 0.0007 2.4982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832691236.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:50 Heat of formation + Delta-G solvation = -74.811380 kcal Electronic energy + Delta-G solvation = -22508.978775 eV Core-core repulsion = 19303.900595 eV Total energy + Delta-G solvation = -3205.078180 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.78599 -38.72490 -36.35740 -34.12233 -32.36290 -32.04706 -31.73842 -28.92970 -27.69867 -26.90035 -25.54670 -23.35208 -22.19937 -22.08169 -20.56434 -19.62410 -18.73829 -17.21912 -16.08885 -15.76194 -15.55313 -15.07639 -14.87728 -14.53785 -14.42871 -14.11625 -13.82621 -13.69349 -13.42530 -13.12027 -12.77662 -12.56436 -12.49569 -12.23559 -11.92135 -11.74921 -11.58982 -11.48056 -11.41539 -11.35100 -11.13879 -10.97024 -10.88921 -10.86263 -10.31110 -10.25403 -10.06897 -9.95696 -9.38592 -8.99105 -8.72227 -8.25364 -7.83824 -6.15768 -4.22660 3.24489 3.30438 3.32826 3.42988 3.83830 4.30819 4.48317 4.51497 4.58222 4.70012 4.85698 5.05607 5.13519 5.20207 5.21223 5.26931 5.29778 5.35428 5.41796 5.44128 5.48791 5.55120 5.55524 5.63788 5.67407 5.71854 5.78106 5.81847 5.91403 5.92521 5.97089 6.10718 6.14265 6.19456 6.29681 6.47369 6.55842 7.03330 7.34278 7.46171 7.49293 7.54208 7.69121 7.98667 8.66285 8.80486 9.15146 9.44204 10.94477 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038199 B = 0.002647 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.826361 B =10576.542502 C =10822.024420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.087 3.913 3 H 0.075 0.925 4 N -0.664 5.664 5 C 0.041 3.959 6 C 0.496 3.504 7 O -0.544 6.544 8 N -0.715 5.715 9 C 0.251 3.749 10 C -0.543 4.543 11 H 0.062 0.938 12 C 0.063 3.937 13 N -0.886 5.886 14 Si 0.904 3.096 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.073 4.073 19 H 0.072 0.928 20 C -0.106 4.106 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.090 4.090 24 H 0.064 0.936 25 C -0.151 4.151 26 C -0.111 4.111 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.350 0.650 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.389 0.611 34 H 0.026 0.974 35 H 0.025 0.975 36 H 0.266 0.734 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.049 0.951 45 H 0.050 0.950 46 H 0.059 0.941 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.142 4.344 23.869 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.023 4.023 3 H 0.093 0.907 4 N -0.296 5.296 5 C -0.092 4.092 6 C 0.280 3.720 7 O -0.422 6.422 8 N -0.365 5.365 9 C 0.130 3.870 10 C -0.581 4.581 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.092 4.092 19 H 0.091 0.909 20 C -0.144 4.144 21 C -0.160 4.160 22 C -0.152 4.152 23 C -0.108 4.108 24 H 0.082 0.918 25 C -0.209 4.209 26 C -0.149 4.149 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.170 0.830 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.222 0.778 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.190 3.416 23.904 24.699 hybrid contribution -1.008 1.201 -1.150 1.945 sum -6.198 4.617 22.754 24.031 Atomic orbital electron populations 1.22588 0.97622 1.02245 1.02054 1.21636 0.92135 0.97953 0.90574 0.90654 1.60203 1.58010 1.08992 1.02354 1.21855 1.00504 0.96175 0.90657 1.20391 0.79356 0.87917 0.84334 1.90662 1.50696 1.16096 1.84729 1.46450 1.65569 1.13835 1.10611 1.19078 0.94984 0.92425 0.80505 1.21232 1.46030 0.96485 0.94377 0.91942 1.24958 0.94849 0.95326 0.98927 1.69978 1.42962 1.14319 1.25038 0.86417 0.78486 0.80483 0.81534 1.20447 1.21008 1.19779 1.21116 0.96167 0.99619 0.92282 0.90927 1.21458 0.94476 1.00435 0.98009 1.21599 0.99953 0.99715 0.94753 1.21570 0.95054 1.00544 0.97989 1.21067 0.95626 0.96388 0.97765 0.91784 1.21947 1.00548 0.96344 1.02018 1.21678 1.00113 0.99039 0.94042 0.91826 0.92825 0.92370 0.83042 0.88792 0.93039 0.77849 0.95563 0.95664 0.92453 0.90085 0.92842 0.92416 0.91887 0.92274 0.92563 0.91689 0.93146 0.93068 0.92177 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.67 8.81 37.16 0.33 -1.34 16 2 C 0.09 0.89 2.17 -67.71 -0.15 0.74 16 3 H 0.08 0.76 7.80 -51.93 -0.40 0.36 16 4 N -0.66 -8.85 5.11 -107.99 -0.55 -9.40 16 5 C 0.04 0.57 5.96 -4.98 -0.03 0.54 16 6 C 0.50 9.86 7.87 -10.99 -0.09 9.77 16 7 O -0.54 -13.13 16.20 5.55 0.09 -13.04 16 8 N -0.72 -15.07 5.55 -61.47 -0.34 -15.41 16 9 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 10 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 11 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 14 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 C -0.07 -0.69 1.69 -90.62 -0.15 -0.85 16 19 H 0.07 0.75 6.43 -51.93 -0.33 0.41 16 20 C -0.11 -1.13 5.05 -26.74 -0.13 -1.26 16 21 C -0.12 -1.15 5.65 -26.74 -0.15 -1.30 16 22 C -0.11 -0.92 5.45 -26.73 -0.15 -1.07 16 23 C -0.09 -0.69 3.19 -90.63 -0.29 -0.98 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 C -0.15 -1.16 8.50 37.15 0.32 -0.84 16 26 C -0.11 -0.89 4.38 -26.73 -0.12 -1.00 16 27 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 28 H 0.05 0.50 7.45 -51.93 -0.39 0.11 16 29 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 30 H 0.35 4.97 8.17 -39.29 -0.32 4.65 16 31 H 0.09 1.19 8.06 -51.93 -0.42 0.77 16 32 H 0.05 0.63 7.44 -51.93 -0.39 0.24 16 33 H 0.39 6.98 8.32 -40.82 -0.34 6.64 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 37 H 0.08 1.07 7.60 -51.93 -0.39 0.67 16 38 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.60 6.43 -51.92 -0.33 0.26 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.55 4.81 -51.93 -0.25 0.30 16 44 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 LS Contribution 360.70 15.07 5.44 5.44 Total: -1.00 -31.12 360.70 -9.13 -40.25 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -8.42 Total: 6.19 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -1.06 Total: -4.38 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.16 Total: -50.35 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.04 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.12 -9.13 -40.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832691236.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.563 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds