Wall clock time and date at job start Tue Mar 31 2020 06:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.46931 * 2 1 4 4 N 1.46906 * 109.46946 * 240.00042 * 2 1 3 5 5 C 1.46901 * 110.99793 * 85.00144 * 4 2 1 6 6 C 1.50705 * 109.46746 * 180.02562 * 5 4 2 7 7 O 1.21274 * 120.00399 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99721 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00157 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47109 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00496 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99572 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99951 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 59.99744 * 14 12 10 16 16 H 1.48503 * 109.47261 * 299.99924 * 14 12 10 17 17 H 1.48500 * 109.47454 * 179.97438 * 14 12 10 18 18 C 1.52999 * 109.47533 * 120.00314 * 2 1 3 19 19 H 1.08989 * 109.47741 * 179.97438 * 18 2 1 20 20 C 1.53002 * 109.46921 * 59.99447 * 18 2 1 21 21 C 1.53007 * 109.46884 * 180.02562 * 20 18 2 22 22 C 1.52999 * 109.46938 * 60.00409 * 21 20 18 23 23 C 1.53005 * 109.47135 * 299.99860 * 22 21 20 24 24 H 1.09001 * 109.47149 * 180.02562 * 23 22 21 25 25 C 1.52995 * 109.47124 * 299.99981 * 23 22 21 26 26 C 1.52993 * 109.47067 * 60.00197 * 23 22 21 27 27 H 1.09001 * 109.47056 * 299.99943 * 1 2 3 28 28 H 1.09001 * 109.47740 * 60.00125 * 1 2 3 29 29 H 1.09003 * 109.47112 * 179.97438 * 1 2 3 30 30 H 1.00899 * 110.99995 * 321.04542 * 4 2 1 31 31 H 1.08992 * 109.47407 * 59.99803 * 5 4 2 32 32 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 33 33 H 0.97003 * 119.99860 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47129 * 59.99342 * 9 8 6 35 35 H 1.08998 * 109.46845 * 300.00149 * 9 8 6 36 36 H 0.97006 * 119.99995 * 359.97438 * 13 12 10 37 37 H 1.08998 * 109.47774 * 300.00345 * 20 18 2 38 38 H 1.09001 * 109.47013 * 60.00658 * 20 18 2 39 39 H 1.08998 * 109.46987 * 300.00571 * 21 20 18 40 40 H 1.09003 * 109.47042 * 180.02562 * 21 20 18 41 41 H 1.08994 * 109.47175 * 179.97438 * 22 21 20 42 42 H 1.09005 * 109.47270 * 59.99911 * 22 21 20 43 43 H 1.09003 * 109.47112 * 180.02562 * 25 23 22 44 44 H 1.09000 * 109.47395 * 300.00245 * 25 23 22 45 45 H 1.09001 * 109.47056 * 60.00006 * 25 23 22 46 46 H 1.08996 * 109.47598 * 180.02562 * 26 23 22 47 47 H 1.09003 * 109.47659 * 59.99809 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5872 -0.5218 -3.5561 7 8 2.8676 -1.6986 -3.4704 8 7 2.7281 0.1205 -4.7326 9 6 3.2194 -0.6030 -5.9079 10 6 3.2837 0.3358 -7.0850 11 1 2.9878 1.3680 -6.9693 12 6 3.7203 -0.1231 -8.3096 13 7 4.0802 -1.3802 -8.4507 14 14 3.8007 1.0406 -9.7686 15 1 4.7222 2.1627 -9.4566 16 1 2.4447 1.5771 -10.0492 17 1 4.2998 0.3075 -10.9597 18 6 2.0401 -0.7213 1.2492 19 1 3.1299 -0.7217 1.2490 20 6 1.5300 -2.1638 1.2491 21 6 2.0396 -2.8849 2.4987 22 6 1.5291 -2.1635 3.7476 23 6 2.0391 -0.7210 3.7477 24 1 1.6758 -0.2071 4.6377 25 6 3.5691 -0.7210 3.7482 26 6 1.5296 0.0001 2.4982 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.4495 -1.4979 -1.4101 31 1 2.7587 1.0462 -2.1183 32 1 1.0870 0.6163 -2.5525 33 1 2.5043 1.0618 -4.8010 34 1 2.5428 -1.4264 -6.1368 35 1 4.2146 -0.9971 -5.7022 36 1 4.0388 -1.9845 -7.6930 37 1 0.4400 -2.1638 1.2492 38 1 1.8933 -2.6776 0.3591 39 1 3.1295 -2.8849 2.4991 40 1 1.6765 -3.9127 2.4985 41 1 1.8917 -2.6774 4.6378 42 1 0.4390 -2.1635 3.7473 43 1 3.9324 0.3067 3.7487 44 1 3.9321 -1.2347 4.6384 45 1 3.9327 -1.2349 2.8584 46 1 1.8932 1.0276 2.4979 47 1 0.4395 0.0001 2.4977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832691237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:53 Heat of formation + Delta-G solvation = -76.721206 kcal Electronic energy + Delta-G solvation = -22554.551684 eV Core-core repulsion = 19349.390688 eV Total energy + Delta-G solvation = -3205.160996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.96326 -38.84770 -36.42167 -34.38299 -32.51237 -32.18822 -31.64381 -28.75995 -27.50141 -26.89760 -25.41817 -23.65045 -22.63194 -22.29458 -20.27442 -19.73494 -18.50042 -17.56022 -16.38960 -15.85490 -15.59664 -15.11559 -14.95668 -14.64975 -14.48517 -14.13859 -13.86919 -13.74757 -13.42073 -13.07543 -12.84836 -12.62010 -12.42491 -12.37643 -12.24826 -11.87280 -11.77908 -11.63850 -11.54017 -11.29957 -11.02563 -11.00324 -10.93212 -10.77978 -10.36288 -10.16521 -10.07017 -10.00977 -9.17309 -8.78463 -8.68466 -8.33978 -7.98356 -6.51863 -4.25406 3.30630 3.37081 3.39148 3.58103 3.75344 4.35213 4.46806 4.48060 4.55262 4.60399 4.81083 4.96753 5.08677 5.15481 5.19586 5.25083 5.26954 5.28418 5.34332 5.39869 5.41600 5.47556 5.50302 5.54893 5.57561 5.66840 5.75310 5.78548 5.84716 5.87949 5.93402 6.05289 6.09526 6.16858 6.17954 6.33226 6.45387 6.92281 7.05784 7.22673 7.33251 7.41541 7.66714 8.26561 8.47642 8.71617 9.00638 9.48571 10.88328 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040059 B = 0.002611 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.794185 B =10723.229526 C =10905.310660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.088 3.912 3 H 0.076 0.924 4 N -0.665 5.665 5 C 0.041 3.959 6 C 0.496 3.504 7 O -0.545 6.545 8 N -0.710 5.710 9 C 0.241 3.759 10 C -0.624 4.624 11 H 0.057 0.943 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 1.076 2.924 15 H -0.286 1.286 16 H -0.287 1.287 17 H -0.280 1.280 18 C -0.074 4.074 19 H 0.080 0.920 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.090 4.090 24 H 0.064 0.936 25 C -0.152 4.152 26 C -0.111 4.111 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.350 0.650 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.392 0.608 34 H 0.015 0.985 35 H 0.017 0.983 36 H 0.273 0.727 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.065 0.935 46 H 0.059 0.941 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.245 4.112 24.422 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.022 4.022 3 H 0.094 0.906 4 N -0.297 5.297 5 C -0.092 4.092 6 C 0.281 3.719 7 O -0.423 6.423 8 N -0.360 5.360 9 C 0.120 3.880 10 C -0.662 4.662 11 H 0.075 0.925 12 C -0.184 4.184 13 N -0.536 5.536 14 Si 0.903 3.097 15 H -0.213 1.213 16 H -0.213 1.213 17 H -0.205 1.205 18 C -0.092 4.092 19 H 0.099 0.901 20 C -0.153 4.153 21 C -0.159 4.159 22 C -0.151 4.151 23 C -0.108 4.108 24 H 0.083 0.917 25 C -0.209 4.209 26 C -0.149 4.149 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.170 0.830 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.224 0.776 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.964 3.403 22.990 23.993 hybrid contribution -1.509 0.561 1.385 2.124 sum -7.473 3.964 24.375 25.801 Atomic orbital electron populations 1.22637 0.97638 1.02428 1.02005 1.21603 0.92388 0.97742 0.90506 0.90612 1.60234 1.58151 1.08979 1.02375 1.21850 1.00595 0.96194 0.90552 1.20456 0.79195 0.87916 0.84369 1.90653 1.50711 1.16150 1.84769 1.46269 1.65579 1.13877 1.10228 1.19139 0.94017 0.92916 0.81966 1.22065 1.50636 0.97483 0.95985 0.92516 1.25887 0.93121 0.98764 1.00621 1.70758 1.43387 1.04409 1.35083 0.83448 0.76530 0.74413 0.75305 1.21274 1.21303 1.20545 1.21136 1.01151 0.94663 0.92297 0.90134 1.21610 1.00177 0.95420 0.98135 1.21565 1.01150 0.98578 0.94560 1.21560 1.00268 0.95342 0.97925 1.21068 0.96000 0.96002 0.97778 0.91724 1.21955 0.95334 1.01610 1.02044 1.21678 1.00522 0.98697 0.93995 0.91780 0.92959 0.92002 0.82951 0.88654 0.92916 0.77550 0.96669 0.96559 0.91679 0.92355 0.90982 0.91669 0.92411 0.92449 0.92318 0.92956 0.93145 0.91628 0.92201 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.69 8.46 37.16 0.31 -1.37 16 2 C 0.09 0.89 2.42 -67.71 -0.16 0.73 16 3 H 0.08 0.75 7.80 -51.93 -0.40 0.35 16 4 N -0.67 -8.95 5.39 -107.99 -0.58 -9.53 16 5 C 0.04 0.58 5.97 -4.97 -0.03 0.55 16 6 C 0.50 9.92 7.87 -10.98 -0.09 9.83 16 7 O -0.54 -13.12 16.20 5.56 0.09 -13.03 16 8 N -0.71 -15.13 5.55 -61.47 -0.34 -15.47 16 9 C 0.24 6.44 4.74 -5.20 -0.02 6.41 16 10 C -0.62 -17.28 9.28 -34.44 -0.32 -17.60 16 11 H 0.06 1.48 7.60 -52.49 -0.40 1.09 16 12 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 13 N -0.90 -27.54 13.65 55.43 0.76 -26.78 16 14 Si 1.08 24.50 29.90 -169.99 -5.08 19.41 16 15 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 C -0.07 -0.70 1.94 -90.62 -0.18 -0.87 16 19 H 0.08 0.88 6.43 -51.94 -0.33 0.55 16 20 C -0.12 -1.12 4.58 -26.73 -0.12 -1.24 16 21 C -0.12 -1.06 5.65 -26.73 -0.15 -1.21 16 22 C -0.11 -0.87 5.45 -26.73 -0.15 -1.01 16 23 C -0.09 -0.68 3.19 -90.62 -0.29 -0.97 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 C -0.15 -1.18 8.50 37.16 0.32 -0.87 16 26 C -0.11 -0.87 4.38 -26.73 -0.12 -0.99 16 27 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 28 H 0.05 0.49 7.45 -51.93 -0.39 0.10 16 29 H 0.06 0.56 6.42 -51.93 -0.33 0.23 16 30 H 0.35 4.99 7.42 -39.29 -0.29 4.70 16 31 H 0.10 1.21 8.05 -51.93 -0.42 0.79 16 32 H 0.05 0.65 7.44 -51.93 -0.39 0.26 16 33 H 0.39 7.19 8.32 -40.82 -0.34 6.85 16 34 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 35 H 0.02 0.48 8.01 -51.93 -0.42 0.06 16 36 H 0.27 8.44 7.22 -40.82 -0.29 8.15 16 37 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 38 H 0.07 0.83 7.21 -51.93 -0.37 0.46 16 39 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.57 4.81 -51.93 -0.25 0.32 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 LS Contribution 354.79 15.07 5.35 5.35 Total: -1.00 -31.92 354.79 -9.04 -40.96 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -8.13 Total: 7.18 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -1.09 Total: -8.09 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.17 Total: -51.78 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.08 Total: 19.41 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.92 -9.04 -40.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832691237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.761 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds