Wall clock time and date at job start Tue Mar 31 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.46931 * 2 1 4 4 N 1.46906 * 109.46946 * 240.00042 * 2 1 3 5 5 C 1.46901 * 110.99793 * 85.00144 * 4 2 1 6 6 C 1.50705 * 109.46746 * 180.02562 * 5 4 2 7 7 O 1.21274 * 120.00399 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99721 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00157 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47109 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00496 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99572 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99951 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 59.99744 * 14 12 10 16 16 H 1.48503 * 109.47261 * 299.99924 * 14 12 10 17 17 H 1.48500 * 109.47454 * 179.97438 * 14 12 10 18 18 C 1.52999 * 109.47533 * 120.00314 * 2 1 3 19 19 H 1.08989 * 109.47741 * 179.97438 * 18 2 1 20 20 C 1.53002 * 109.46921 * 59.99447 * 18 2 1 21 21 C 1.53007 * 109.46884 * 180.02562 * 20 18 2 22 22 C 1.52999 * 109.46938 * 60.00409 * 21 20 18 23 23 C 1.53005 * 109.47135 * 299.99860 * 22 21 20 24 24 H 1.09001 * 109.47149 * 180.02562 * 23 22 21 25 25 C 1.52995 * 109.47124 * 299.99981 * 23 22 21 26 26 C 1.52993 * 109.47067 * 60.00197 * 23 22 21 27 27 H 1.09001 * 109.47056 * 299.99943 * 1 2 3 28 28 H 1.09001 * 109.47740 * 60.00125 * 1 2 3 29 29 H 1.09003 * 109.47112 * 179.97438 * 1 2 3 30 30 H 1.00899 * 110.99995 * 321.04542 * 4 2 1 31 31 H 1.08992 * 109.47407 * 59.99803 * 5 4 2 32 32 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 33 33 H 0.97003 * 119.99860 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47129 * 59.99342 * 9 8 6 35 35 H 1.08998 * 109.46845 * 300.00149 * 9 8 6 36 36 H 0.97006 * 119.99995 * 359.97438 * 13 12 10 37 37 H 1.08998 * 109.47774 * 300.00345 * 20 18 2 38 38 H 1.09001 * 109.47013 * 60.00658 * 20 18 2 39 39 H 1.08998 * 109.46987 * 300.00571 * 21 20 18 40 40 H 1.09003 * 109.47042 * 180.02562 * 21 20 18 41 41 H 1.08994 * 109.47175 * 179.97438 * 22 21 20 42 42 H 1.09005 * 109.47270 * 59.99911 * 22 21 20 43 43 H 1.09003 * 109.47112 * 180.02562 * 25 23 22 44 44 H 1.09000 * 109.47395 * 300.00245 * 25 23 22 45 45 H 1.09001 * 109.47056 * 60.00006 * 25 23 22 46 46 H 1.08996 * 109.47598 * 180.02562 * 26 23 22 47 47 H 1.09003 * 109.47659 * 59.99809 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5872 -0.5218 -3.5561 7 8 2.8676 -1.6986 -3.4704 8 7 2.7281 0.1205 -4.7326 9 6 3.2194 -0.6030 -5.9079 10 6 3.2837 0.3358 -7.0850 11 1 2.9878 1.3680 -6.9693 12 6 3.7203 -0.1231 -8.3096 13 7 4.0802 -1.3802 -8.4507 14 14 3.8007 1.0406 -9.7686 15 1 4.7222 2.1627 -9.4566 16 1 2.4447 1.5771 -10.0492 17 1 4.2998 0.3075 -10.9597 18 6 2.0401 -0.7213 1.2492 19 1 3.1299 -0.7217 1.2490 20 6 1.5300 -2.1638 1.2491 21 6 2.0396 -2.8849 2.4987 22 6 1.5291 -2.1635 3.7476 23 6 2.0391 -0.7210 3.7477 24 1 1.6758 -0.2071 4.6377 25 6 3.5691 -0.7210 3.7482 26 6 1.5296 0.0001 2.4982 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.4495 -1.4979 -1.4101 31 1 2.7587 1.0462 -2.1183 32 1 1.0870 0.6163 -2.5525 33 1 2.5043 1.0618 -4.8010 34 1 2.5428 -1.4264 -6.1368 35 1 4.2146 -0.9971 -5.7022 36 1 4.0388 -1.9845 -7.6930 37 1 0.4400 -2.1638 1.2492 38 1 1.8933 -2.6776 0.3591 39 1 3.1295 -2.8849 2.4991 40 1 1.6765 -3.9127 2.4985 41 1 1.8917 -2.6774 4.6378 42 1 0.4390 -2.1635 3.7473 43 1 3.9324 0.3067 3.7487 44 1 3.9321 -1.2347 4.6384 45 1 3.9327 -1.2349 2.8584 46 1 1.8932 1.0276 2.4979 47 1 0.4395 0.0001 2.4977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832691237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:52 Heat of formation + Delta-G solvation = -98.347675 kcal Electronic energy + Delta-G solvation = -22555.489478 eV Core-core repulsion = 19349.390688 eV Total energy + Delta-G solvation = -3206.098790 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.89435 -40.30935 -37.39164 -36.37032 -34.46487 -33.20329 -32.36677 -29.79079 -28.96982 -27.67312 -26.81175 -24.84810 -24.17381 -23.17587 -21.47893 -21.00277 -19.45470 -19.16524 -17.94908 -17.23509 -16.68263 -16.33296 -15.94715 -15.75024 -15.57243 -15.36972 -15.26839 -14.73577 -14.69944 -14.40241 -14.09131 -13.91780 -13.77831 -13.50823 -13.11985 -13.07714 -13.04322 -12.61314 -12.53813 -12.45541 -12.32980 -12.00503 -11.92031 -11.68960 -11.59237 -11.14023 -11.01111 -10.84088 -10.76736 -10.75041 -10.63189 -9.97486 -9.33178 -8.81071 -6.56699 1.55209 1.63674 1.68801 1.83042 2.28663 2.56897 3.06938 3.25968 3.78379 3.83441 3.85545 3.92539 4.10377 4.24045 4.31656 4.35815 4.44291 4.48655 4.49951 4.59483 4.60714 4.71026 4.76574 4.78199 4.83995 4.88792 4.94164 4.97666 5.06151 5.12257 5.18761 5.20528 5.25718 5.35505 5.40593 5.43826 5.48523 5.51067 5.53208 5.60136 5.73249 6.02133 6.08431 6.30022 6.35059 6.81483 7.23586 7.41977 8.58266 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040059 B = 0.002611 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.794185 B =10723.229526 C =10905.310660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.089 3.911 3 H 0.085 0.915 4 N -0.683 5.683 5 C 0.058 3.942 6 C 0.492 3.508 7 O -0.591 6.591 8 N -0.706 5.706 9 C 0.254 3.746 10 C -0.630 4.630 11 H 0.077 0.923 12 C -0.034 4.034 13 N -0.930 5.930 14 Si 1.130 2.870 15 H -0.263 1.263 16 H -0.262 1.262 17 H -0.287 1.287 18 C -0.069 4.069 19 H 0.062 0.938 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.110 4.110 23 C -0.089 4.089 24 H 0.077 0.923 25 C -0.152 4.152 26 C -0.106 4.106 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.343 0.657 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.409 0.591 34 H -0.018 1.018 35 H -0.020 1.020 36 H 0.253 0.747 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.066 0.934 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.559 6.956 25.657 27.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.020 4.020 3 H 0.104 0.896 4 N -0.315 5.315 5 C -0.074 4.074 6 C 0.279 3.721 7 O -0.472 6.472 8 N -0.357 5.357 9 C 0.130 3.870 10 C -0.667 4.667 11 H 0.095 0.905 12 C -0.233 4.233 13 N -0.566 5.566 14 Si 0.949 3.051 15 H -0.188 1.188 16 H -0.187 1.187 17 H -0.212 1.212 18 C -0.088 4.088 19 H 0.081 0.919 20 C -0.150 4.150 21 C -0.159 4.159 22 C -0.147 4.147 23 C -0.108 4.108 24 H 0.096 0.904 25 C -0.209 4.209 26 C -0.143 4.143 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.162 0.838 31 H 0.137 0.863 32 H 0.100 0.900 33 H 0.245 0.755 34 H 0.000 1.000 35 H -0.002 1.002 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.302 6.291 24.286 26.128 hybrid contribution -1.086 -0.389 1.085 1.584 sum -8.388 5.901 25.370 27.365 Atomic orbital electron populations 1.22575 0.96297 1.02417 1.02848 1.21684 0.93415 0.97799 0.89081 0.89642 1.60252 1.59006 1.09155 1.03073 1.21773 1.02193 0.95657 0.87808 1.21571 0.77638 0.87584 0.85269 1.90633 1.52448 1.18607 1.85529 1.46046 1.65725 1.14539 1.09361 1.18637 0.91520 0.92556 0.84242 1.22440 1.49789 0.98378 0.96116 0.90480 1.27691 0.91903 0.99287 1.04374 1.70907 1.45778 1.05623 1.34319 0.82790 0.78200 0.72786 0.71299 1.18784 1.18719 1.21228 1.21076 1.00062 0.94614 0.93062 0.91942 1.21554 1.00474 0.95589 0.97408 1.21556 1.00600 0.98761 0.94958 1.21537 1.00572 0.95368 0.97259 1.21085 0.95617 0.95917 0.98139 0.90429 1.21941 0.95762 1.01623 1.01555 1.21644 1.00976 0.98740 0.92973 0.90014 0.92981 0.92474 0.83785 0.86284 0.89986 0.75473 1.00030 1.00174 0.93745 0.91647 0.93627 0.92608 0.92446 0.91837 0.91708 0.92682 0.92695 0.93087 0.91512 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 8.46 71.98 0.61 -2.19 16 2 C 0.09 1.65 2.42 44.91 0.11 1.75 16 3 H 0.09 1.44 7.80 -2.39 -0.02 1.42 16 4 N -0.68 -17.82 5.39 -495.58 -2.67 -20.49 16 5 C 0.06 1.53 5.97 85.56 0.51 2.04 16 6 C 0.49 19.72 7.87 87.66 0.69 20.41 16 7 O -0.59 -29.57 16.20 -3.01 -0.05 -29.62 16 8 N -0.71 -30.06 5.55 -466.80 -2.59 -32.65 16 9 C 0.25 14.05 4.74 85.63 0.41 14.46 16 10 C -0.63 -34.89 9.28 25.60 0.24 -34.65 16 11 H 0.08 3.88 7.60 -2.91 -0.02 3.86 16 12 C -0.03 -1.95 5.46 84.66 0.46 -1.48 16 13 N -0.93 -58.45 13.65 21.45 0.29 -58.15 16 14 Si 1.13 48.11 29.90 68.60 2.05 50.16 16 15 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 16 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 17 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 18 C -0.07 -1.23 1.94 -10.79 -0.02 -1.25 16 19 H 0.06 1.35 6.43 -2.39 -0.02 1.34 16 20 C -0.11 -2.15 4.58 30.60 0.14 -2.01 16 21 C -0.12 -2.08 5.65 30.60 0.17 -1.91 16 22 C -0.11 -1.49 5.45 30.60 0.17 -1.32 16 23 C -0.09 -1.15 3.19 -10.80 -0.03 -1.19 16 24 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 25 C -0.15 -2.17 8.50 71.98 0.61 -1.56 16 26 C -0.11 -1.40 4.38 30.59 0.13 -1.27 16 27 H 0.08 0.98 6.43 -2.39 -0.02 0.96 16 28 H 0.05 0.81 7.45 -2.39 -0.02 0.79 16 29 H 0.06 0.94 6.42 -2.39 -0.02 0.92 16 30 H 0.34 9.82 7.42 -89.69 -0.67 9.15 16 31 H 0.12 2.65 8.05 -2.39 -0.02 2.63 16 32 H 0.08 1.75 7.44 -2.39 -0.02 1.73 16 33 H 0.41 14.38 8.32 -92.71 -0.77 13.61 16 34 H -0.02 -1.11 8.01 -2.39 -0.02 -1.13 16 35 H -0.02 -1.21 8.01 -2.39 -0.02 -1.23 16 36 H 0.25 16.54 7.22 -92.70 -0.67 15.87 16 37 H 0.06 1.14 6.43 -2.39 -0.02 1.12 16 38 H 0.04 1.10 7.21 -2.39 -0.02 1.09 16 39 H 0.06 1.05 6.43 -2.39 -0.02 1.04 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.05 0.88 4.81 -2.39 -0.01 0.87 16 46 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.07 0.86 6.43 -2.39 -0.02 0.84 16 Total: -1.00 -71.91 354.79 0.85 -71.06 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: -0.38 Total: 29.87 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 4.19 Total: -10.17 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -4.97 Total: -111.29 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.05 Total: -29.62 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.05 Total: 50.16 kcal Total: -71.91 0.85 -71.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832691237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.284 kcal (2) G-P(sol) polarization free energy of solvation -71.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds