Wall clock time and date at job start Tue Mar 31 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47538 * 2 1 4 4 N 1.46904 * 109.47308 * 240.00000 * 2 1 3 5 5 C 1.46899 * 111.00029 * 84.99846 * 4 2 1 6 6 C 1.50703 * 109.47107 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99985 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99944 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.46992 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 C 1.52998 * 109.47330 * 119.99879 * 2 1 3 19 19 H 1.08999 * 109.47652 * 179.97438 * 18 2 1 20 20 C 1.53009 * 109.47027 * 60.00101 * 18 2 1 21 21 C 1.52991 * 109.47332 * 180.02562 * 20 18 2 22 22 C 1.53001 * 109.47602 * 59.99444 * 21 20 18 23 23 C 1.52999 * 109.47229 * 300.00778 * 22 21 20 24 24 H 1.09005 * 109.46605 * 299.99276 * 23 22 21 25 25 C 1.52993 * 109.47397 * 179.97438 * 23 22 21 26 26 C 1.52998 * 109.47526 * 59.99427 * 23 22 21 27 27 H 1.09001 * 109.46997 * 60.00043 * 1 2 3 28 28 H 1.09004 * 109.47538 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46994 * 300.00250 * 1 2 3 30 30 H 1.00905 * 110.99940 * 208.95626 * 4 2 1 31 31 H 1.09002 * 109.47043 * 60.00207 * 5 4 2 32 32 H 1.09001 * 109.47354 * 300.00146 * 5 4 2 33 33 H 0.97000 * 119.99708 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 35 35 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 36 36 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 37 37 H 1.09005 * 109.46735 * 300.00228 * 20 18 2 38 38 H 1.08997 * 109.47295 * 59.99574 * 20 18 2 39 39 H 1.08998 * 109.47503 * 180.02562 * 21 20 18 40 40 H 1.09005 * 109.47097 * 299.99639 * 21 20 18 41 41 H 1.09005 * 109.46736 * 59.99974 * 22 21 20 42 42 H 1.09001 * 109.47558 * 180.02562 * 22 21 20 43 43 H 1.09001 * 109.47372 * 59.99352 * 25 23 22 44 44 H 1.08997 * 109.47830 * 179.97438 * 25 23 22 45 45 H 1.09007 * 109.47177 * 299.99613 * 25 23 22 46 46 H 1.08994 * 109.47263 * 180.02562 * 26 23 22 47 47 H 1.08998 * 109.47068 * 59.99993 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5873 -0.5219 -3.5560 7 8 2.8669 -1.6989 -3.4705 8 7 2.7283 0.1204 -4.7325 9 6 3.2186 -0.6034 -5.9081 10 6 3.2831 0.3354 -7.0852 11 1 2.9887 1.3680 -6.9692 12 6 3.7189 -0.1237 -8.3101 13 7 4.0778 -1.3810 -8.4512 14 14 3.7995 1.0401 -9.7689 15 1 4.7220 2.1614 -9.4573 16 1 4.2964 0.3064 -10.9606 17 1 2.4438 1.5776 -10.0489 18 6 2.0400 -0.7212 1.2492 19 1 3.1300 -0.7216 1.2490 20 6 1.5300 -2.1638 1.2492 21 6 2.0394 -2.8849 2.4987 22 6 1.5291 -2.1635 3.7477 23 6 2.0390 -0.7209 3.7477 24 1 3.1291 -0.7210 3.7481 25 6 1.5282 0.0006 4.9963 26 6 1.5295 0.0002 2.4982 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 2.9173 -1.1205 -1.0287 31 1 2.7588 1.0462 -2.1182 32 1 1.0870 0.6163 -2.5526 33 1 2.5043 1.0617 -4.8010 34 1 2.5413 -1.4263 -6.1368 35 1 4.2136 -0.9981 -5.7027 36 1 4.3840 -1.7041 -9.3131 37 1 0.4399 -2.1637 1.2492 38 1 1.8932 -2.6776 0.3592 39 1 1.6765 -3.9126 2.4985 40 1 3.1295 -2.8849 2.4991 41 1 0.4390 -2.1634 3.7473 42 1 1.8924 -2.6769 4.6379 43 1 1.8908 -0.5129 5.8867 44 1 1.8918 1.0282 4.9966 45 1 0.4381 0.0007 4.9956 46 1 1.8932 1.0277 2.4980 47 1 0.4395 0.0002 2.4978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832691238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:55 Heat of formation + Delta-G solvation = -76.680072 kcal Electronic energy + Delta-G solvation = -22333.627842 eV Core-core repulsion = 19128.468629 eV Total energy + Delta-G solvation = -3205.159213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.75203 -38.68471 -36.23986 -34.12540 -32.70388 -32.28709 -31.77712 -28.77802 -27.77706 -26.62562 -25.75442 -23.35146 -22.13772 -22.07803 -20.25955 -19.66361 -19.21193 -17.19856 -16.05222 -15.57345 -15.44059 -15.28466 -14.92921 -14.79513 -14.55045 -14.30883 -14.05370 -13.58715 -13.33945 -12.90317 -12.75710 -12.45375 -12.38507 -12.22818 -11.98896 -11.88541 -11.78885 -11.56442 -11.55277 -11.18332 -10.99782 -10.98703 -10.85823 -10.81565 -10.44832 -10.30682 -10.19071 -10.03605 -9.39723 -8.98621 -8.71584 -8.30248 -7.83714 -6.15254 -4.22250 3.25783 3.30495 3.32020 3.43150 3.83182 4.30604 4.42206 4.45975 4.50295 4.65463 4.83247 4.94591 5.04565 5.16240 5.20516 5.28626 5.30961 5.35606 5.41234 5.42936 5.46087 5.51199 5.54425 5.59169 5.64075 5.67832 5.70723 5.83977 5.86490 5.91041 5.98005 6.03761 6.09933 6.17250 6.24307 6.34727 6.45196 7.03351 7.34378 7.46178 7.49228 7.54490 7.69322 7.99039 8.66423 8.80653 9.15310 9.44465 10.94911 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044643 B = 0.002513 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.054070 B =11137.863425 C =11457.308610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.088 3.912 3 H 0.041 0.959 4 N -0.665 5.665 5 C 0.040 3.960 6 C 0.496 3.504 7 O -0.544 6.544 8 N -0.716 5.716 9 C 0.251 3.749 10 C -0.544 4.544 11 H 0.062 0.938 12 C 0.063 3.937 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.275 1.275 18 C -0.087 4.087 19 H 0.067 0.933 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.113 4.113 23 C -0.092 4.092 24 H 0.067 0.933 25 C -0.147 4.147 26 C -0.108 4.108 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.350 0.650 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.389 0.611 34 H 0.026 0.974 35 H 0.025 0.975 36 H 0.266 0.734 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.058 0.942 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.062 4.231 24.849 25.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 H 0.059 0.941 4 N -0.299 5.299 5 C -0.092 4.092 6 C 0.280 3.720 7 O -0.422 6.422 8 N -0.365 5.365 9 C 0.130 3.870 10 C -0.582 4.582 11 H 0.080 0.920 12 C -0.141 4.141 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.105 4.105 19 H 0.085 0.915 20 C -0.148 4.148 21 C -0.160 4.160 22 C -0.151 4.151 23 C -0.111 4.111 24 H 0.086 0.914 25 C -0.205 4.205 26 C -0.146 4.146 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.170 0.830 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.222 0.778 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.389 2.976 24.562 25.553 hybrid contribution 0.766 1.640 -0.749 1.958 sum -5.623 4.616 23.813 24.900 Atomic orbital electron populations 1.21909 0.94716 1.02628 1.00868 1.21547 0.96154 0.95391 0.89069 0.94135 1.60186 1.34703 1.31941 1.03033 1.21886 1.01896 0.94333 0.91132 1.20381 0.79121 0.87887 0.84572 1.90658 1.50713 1.15894 1.84899 1.46452 1.65586 1.13792 1.10655 1.19073 0.94925 0.92468 0.80494 1.21197 1.46169 0.96449 0.94389 0.91987 1.24959 0.94844 0.95345 0.98917 1.69967 1.42906 1.14316 1.25086 0.86472 0.78503 0.80525 0.81377 1.20095 1.21072 1.20066 1.21303 0.99871 0.95842 0.93522 0.91497 1.21569 1.00991 0.94414 0.97862 1.21571 1.00672 0.98919 0.94795 1.21595 1.00653 0.95019 0.97795 1.21128 1.00266 0.95064 0.94611 0.91443 1.21831 1.01133 1.00127 0.97362 1.21676 1.01123 0.98455 0.93311 0.92996 0.91536 0.92604 0.83013 0.93065 0.88748 0.77844 0.95568 0.95659 0.92400 0.91682 0.90587 0.92130 0.92263 0.92111 0.92472 0.92894 0.92839 0.92763 0.92281 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.71 37.15 0.32 -1.11 16 2 C 0.09 0.92 2.44 -67.71 -0.17 0.76 16 3 H 0.04 0.41 7.80 -51.93 -0.40 0.01 16 4 N -0.67 -9.08 5.21 -107.99 -0.56 -9.64 16 5 C 0.04 0.58 5.97 -4.98 -0.03 0.55 16 6 C 0.50 9.97 7.87 -10.98 -0.09 9.88 16 7 O -0.54 -13.22 16.20 5.56 0.09 -13.13 16 8 N -0.72 -15.19 5.55 -61.47 -0.34 -15.53 16 9 C 0.25 6.74 5.43 -5.19 -0.03 6.72 16 10 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 11 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 14 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 C -0.09 -0.80 1.88 -90.61 -0.17 -0.97 16 19 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 20 C -0.11 -1.09 4.69 -26.73 -0.13 -1.22 16 21 C -0.12 -1.06 5.92 -26.73 -0.16 -1.21 16 22 C -0.11 -0.86 5.20 -26.73 -0.14 -1.00 16 23 C -0.09 -0.68 2.72 -90.62 -0.25 -0.93 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 C -0.15 -0.95 9.19 37.15 0.34 -0.60 16 26 C -0.11 -0.84 4.13 -26.73 -0.11 -0.95 16 27 H 0.05 0.54 7.45 -51.93 -0.39 0.15 16 28 H 0.07 0.72 6.43 -51.93 -0.33 0.39 16 29 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 30 H 0.35 5.03 7.89 -39.29 -0.31 4.72 16 31 H 0.05 0.64 8.06 -51.93 -0.42 0.22 16 32 H 0.09 1.23 7.44 -51.93 -0.39 0.84 16 33 H 0.39 7.04 8.32 -40.82 -0.34 6.70 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 38 H 0.08 0.91 7.48 -51.93 -0.39 0.52 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -31.30 363.73 -9.20 -40.50 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -8.58 Total: 5.58 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -1.01 Total: -3.62 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.17 Total: -50.75 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.30 -9.20 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832691238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.176 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds