Wall clock time and date at job start Tue Mar 31 2020 06:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47472 * 2 1 4 4 C 1.52996 * 109.47236 * 120.00166 * 2 1 3 5 5 N 1.46502 * 109.47223 * 66.14880 * 4 2 1 6 6 C 1.46497 * 120.00216 * 83.79668 * 5 4 2 7 7 C 1.50707 * 109.47074 * 270.00433 * 6 5 4 8 8 H 1.08006 * 119.99795 * 359.97438 * 7 6 5 9 9 C 1.37868 * 119.99924 * 180.02562 * 7 6 5 10 10 N 1.31525 * 119.99776 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00349 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46671 * 90.00179 * 11 9 7 13 13 H 1.48498 * 109.46994 * 330.00909 * 11 9 7 14 14 H 1.48490 * 109.47235 * 210.00284 * 11 9 7 15 15 C 1.34779 * 119.99764 * 263.79483 * 5 4 2 16 16 O 1.21288 * 119.99737 * 175.87273 * 15 5 4 17 17 C 1.50695 * 120.00243 * 355.87618 * 15 5 4 18 18 H 1.08999 * 110.27612 * 10.26448 * 17 15 5 19 19 C 1.54598 * 110.30812 * 248.17229 * 17 15 5 20 20 C 1.55099 * 102.84518 * 219.18223 * 19 17 15 21 21 N 1.48540 * 103.28366 * 37.31068 * 20 19 17 22 22 C 1.46904 * 110.99764 * 200.33216 * 21 20 19 23 23 C 1.47900 * 105.81684 * 320.84053 * 21 20 19 24 24 H 1.09000 * 109.91948 * 265.98014 * 23 21 20 25 25 C 1.53008 * 110.07773 * 144.77513 * 23 21 20 26 26 H 1.09003 * 109.46511 * 63.35936 * 1 2 3 27 27 H 1.08993 * 109.46857 * 183.36100 * 1 2 3 28 28 H 1.08997 * 109.46973 * 303.36486 * 1 2 3 29 29 H 1.09000 * 109.47345 * 240.00012 * 2 1 3 30 30 H 1.08997 * 109.47300 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47370 * 300.00104 * 3 2 1 32 32 H 1.09008 * 109.46851 * 59.99959 * 3 2 1 33 33 H 1.09005 * 109.47120 * 306.14835 * 4 2 1 34 34 H 1.08998 * 109.47400 * 186.15084 * 4 2 1 35 35 H 1.08994 * 109.47107 * 150.00164 * 6 5 4 36 36 H 1.09002 * 109.47003 * 29.99429 * 6 5 4 37 37 H 0.96999 * 120.00016 * 179.97438 * 10 9 7 38 38 H 1.08993 * 110.72380 * 337.48537 * 19 17 15 39 39 H 1.09005 * 110.72027 * 100.77252 * 19 17 15 40 40 H 1.08995 * 110.59963 * 278.87852 * 20 19 17 41 41 H 1.09005 * 110.83031 * 155.84807 * 20 19 17 42 42 H 1.08998 * 109.46511 * 177.39588 * 22 21 20 43 43 H 1.09000 * 109.46954 * 297.39221 * 22 21 20 44 44 H 1.08992 * 109.47124 * 57.39346 * 22 21 20 45 45 H 1.09000 * 109.46919 * 312.54646 * 25 23 21 46 46 H 1.08993 * 109.46804 * 72.54712 * 25 23 21 47 47 H 1.09000 * 109.46879 * 192.54517 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6762 -2.1386 1.1775 6 6 2.5214 -3.0750 0.4325 7 6 2.0554 -3.1425 -0.9991 8 1 1.2136 -2.5477 -1.3216 9 6 2.7031 -3.9644 -1.8968 10 7 2.2961 -4.0237 -3.1461 11 14 4.1586 -4.9938 -1.3389 12 1 3.6763 -6.3136 -0.8586 13 1 4.8660 -4.2942 -0.2363 14 1 5.0905 -5.1918 -2.4779 15 6 0.5640 -2.5810 1.7970 16 8 0.2221 -3.7384 1.6759 17 6 -0.2548 -1.6377 2.6399 18 1 0.0839 -0.6117 2.4960 19 6 -0.1584 -2.0302 4.1321 20 6 -1.6033 -1.7951 4.6446 21 7 -2.4460 -2.2307 3.5015 22 6 -3.7936 -1.6529 3.5908 23 6 -1.7480 -1.7623 2.2846 24 1 -2.1401 -0.7913 1.9822 25 6 -1.9315 -2.7742 1.1516 26 1 -0.3632 0.4608 -0.9186 27 1 -0.3633 -1.0258 0.0602 28 1 -0.3633 0.5652 0.8583 29 1 1.8934 -0.5138 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9564 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.5896 -0.2749 2.1358 34 1 3.1244 -0.6269 1.3060 35 1 2.4527 -4.0646 0.8841 36 1 3.5560 -2.7331 0.4620 37 1 2.7519 -4.6016 -3.7778 38 1 0.1224 -3.0781 4.2379 39 1 0.5478 -1.3857 4.6556 40 1 -1.7660 -0.7395 4.8621 41 1 -1.8059 -2.4038 5.5258 42 1 -4.3750 -1.9506 2.7181 43 1 -4.2845 -2.0138 4.4947 44 1 -3.7213 -0.5660 3.6258 45 1 -1.7269 -3.7779 1.5242 46 1 -2.9560 -2.7251 0.7831 47 1 -1.2420 -2.5402 0.3404 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843776524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:05 Heat of formation + Delta-G solvation = -24.587040 kcal Electronic energy + Delta-G solvation = -24719.126683 eV Core-core repulsion = 21516.226394 eV Total energy + Delta-G solvation = -3202.900289 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.38536 -37.96852 -36.22138 -33.59233 -32.42803 -32.04338 -31.06730 -28.47251 -26.84877 -26.30989 -25.41796 -24.72040 -22.77606 -21.15303 -20.37327 -19.94602 -17.96288 -16.98399 -16.80853 -15.69412 -15.27330 -15.10506 -14.73392 -14.46172 -14.15896 -13.80945 -13.49808 -13.35568 -12.98445 -12.68127 -12.46033 -12.34571 -11.94745 -11.87881 -11.84507 -11.63096 -11.50685 -11.44104 -11.29252 -10.99062 -10.85300 -10.83667 -10.64661 -10.57484 -10.47737 -10.33655 -10.04905 -9.96791 -9.39541 -8.64413 -8.53981 -8.36794 -7.60554 -6.04524 -4.01963 3.31257 3.34640 3.37138 3.39568 3.86208 4.02276 4.43032 4.63860 4.80066 4.94432 5.13995 5.21181 5.27368 5.29891 5.33482 5.35837 5.43210 5.48816 5.53811 5.59321 5.72838 5.79498 5.81022 5.86678 5.90888 5.98951 6.01270 6.06739 6.15357 6.21968 6.23787 6.33786 6.40128 6.47356 6.67328 6.75394 6.95118 6.97444 6.97824 7.09334 7.21931 7.44351 7.66189 8.33667 8.52086 8.99189 9.09231 9.56714 11.08558 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017708 B = 0.006091 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.849726 B = 4595.945888 C = 5168.561007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.141 4.141 4 C 0.118 3.882 5 N -0.593 5.593 6 C 0.216 3.784 7 C -0.520 4.520 8 H 0.078 0.922 9 C 0.072 3.928 10 N -0.898 5.898 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.267 1.267 14 H -0.287 1.287 15 C 0.519 3.481 16 O -0.525 6.525 17 C -0.127 4.127 18 H 0.095 0.905 19 C -0.109 4.109 20 C 0.037 3.963 21 N -0.513 5.513 22 C 0.018 3.982 23 C 0.087 3.913 24 H 0.051 0.949 25 C -0.143 4.143 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.027 0.973 37 H 0.263 0.737 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.024 0.976 45 H 0.094 0.906 46 H 0.036 0.964 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.144 10.843 13.568 18.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.141 4.141 3 C -0.199 4.199 4 C -0.006 4.006 5 N -0.324 5.324 6 C 0.095 3.905 7 C -0.559 4.559 8 H 0.096 0.904 9 C -0.130 4.130 10 N -0.537 5.537 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.192 1.192 14 H -0.213 1.213 15 C 0.306 3.694 16 O -0.401 6.401 17 C -0.149 4.149 18 H 0.113 0.887 19 C -0.147 4.147 20 C -0.091 4.091 21 N -0.238 5.238 22 C -0.131 4.131 23 C -0.021 4.021 24 H 0.069 0.931 25 C -0.200 4.200 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.113 0.887 46 H 0.055 0.945 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.343 9.552 13.308 17.230 hybrid contribution 0.809 0.517 -0.013 0.960 sum -4.533 10.069 13.295 17.282 Atomic orbital electron populations 1.21996 0.95810 1.02412 1.00393 1.21627 0.96004 0.95452 1.00979 1.21772 1.00811 0.96255 1.01077 1.21589 1.00065 0.81751 0.97218 1.47955 1.25057 1.08334 1.51100 1.19645 0.89346 0.89005 0.92472 1.21337 1.16714 1.26113 0.91719 0.90363 1.24850 0.97089 0.96272 0.94796 1.69898 1.41202 1.39256 1.03340 0.86902 0.83010 0.81653 0.78405 1.20033 1.19195 1.21251 1.19903 0.80885 0.88496 0.80115 1.90659 1.67606 1.19055 1.62778 1.22445 0.95876 1.00381 0.96196 0.88738 1.22459 0.96304 1.03102 0.92871 1.23239 0.92673 0.98345 0.94802 1.64723 1.01859 1.55406 1.01793 1.22499 0.91301 0.96667 1.02644 1.22181 0.90916 0.97272 0.91775 0.93134 1.22183 0.99792 1.01747 0.96308 0.93113 0.91485 0.93977 0.88121 0.92812 0.92809 0.93475 0.91465 0.91140 0.94802 0.95516 0.92705 0.89813 0.90834 0.93961 0.89986 0.91293 0.91472 0.95753 0.88737 0.94547 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 7.83 37.16 0.29 -2.01 16 2 C -0.12 -1.92 3.01 -90.62 -0.27 -2.19 16 3 C -0.14 -1.75 9.19 37.16 0.34 -1.41 16 4 C 0.12 1.84 4.90 -4.04 -0.02 1.82 16 5 N -0.59 -11.83 2.27 -175.06 -0.40 -12.23 16 6 C 0.22 5.17 4.24 -5.19 -0.02 5.15 16 7 C -0.52 -14.45 8.94 -34.44 -0.31 -14.76 16 8 H 0.08 2.36 7.54 -52.48 -0.40 1.97 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 11 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 12 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 C 0.52 10.25 4.02 -10.99 -0.04 10.21 16 16 O -0.52 -12.51 13.11 5.55 0.07 -12.43 16 17 C -0.13 -1.92 2.00 -90.41 -0.18 -2.10 16 18 H 0.09 1.26 4.07 -51.93 -0.21 1.05 16 19 C -0.11 -1.43 6.61 -24.78 -0.16 -1.59 16 20 C 0.04 0.43 6.56 -1.81 -0.01 0.42 16 21 N -0.51 -7.10 5.19 -230.67 -1.20 -8.30 16 22 C 0.02 0.19 9.40 60.07 0.56 0.76 16 23 C 0.09 1.31 2.62 -66.64 -0.17 1.14 16 24 H 0.05 0.70 7.73 -51.93 -0.40 0.30 16 25 C -0.14 -2.61 7.90 37.16 0.29 -2.31 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.21 3.67 -51.93 -0.19 1.02 16 28 H 0.04 0.54 7.29 -51.93 -0.38 0.16 16 29 H 0.10 2.01 6.65 -51.93 -0.35 1.67 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 33 H 0.07 0.87 5.60 -51.93 -0.29 0.58 16 34 H 0.07 1.04 7.98 -51.93 -0.41 0.63 16 35 H 0.03 0.87 6.91 -51.93 -0.36 0.52 16 36 H 0.03 0.62 7.01 -51.93 -0.36 0.25 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.08 1.27 7.80 -51.93 -0.40 0.87 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.43 7.96 -51.93 -0.41 0.01 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.02 0.24 8.00 -51.93 -0.42 -0.17 16 45 H 0.09 1.99 6.28 -51.93 -0.33 1.66 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 1.38 4.91 -51.93 -0.25 1.12 16 LS Contribution 346.42 15.07 5.22 5.22 Total: -1.00 -31.91 346.42 -8.14 -40.05 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -8.14 Total: 2.35 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 0.20 Total: -4.90 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.82 Total: -47.15 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.07 Total: -12.43 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.91 -8.14 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843776524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.465 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds