Wall clock time and date at job start Tue Mar 31 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46883 * 2 1 4 4 C 1.52994 * 109.47176 * 119.99814 * 2 1 3 5 5 N 1.46500 * 109.47151 * 174.99963 * 4 2 1 6 6 C 1.46506 * 119.99746 * 77.56407 * 5 4 2 7 7 C 1.50699 * 109.47072 * 90.00161 * 6 5 4 8 8 H 1.08002 * 120.00065 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99822 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00098 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00062 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47215 * 180.02562 * 11 9 7 13 13 H 1.48499 * 109.46644 * 60.00162 * 11 9 7 14 14 H 1.48500 * 109.47221 * 300.00247 * 11 9 7 15 15 C 1.34779 * 120.00539 * 257.56173 * 5 4 2 16 16 O 1.21578 * 120.00421 * 186.04481 * 15 5 4 17 17 N 1.34781 * 119.99402 * 6.04298 * 15 5 4 18 18 C 1.46926 * 120.63233 * 16.85192 * 17 15 5 19 19 C 1.53622 * 108.54396 * 126.36257 * 18 17 15 20 20 C 1.53049 * 109.24016 * 54.85983 * 19 18 17 21 21 C 1.53034 * 109.53363 * 298.50878 * 20 19 18 22 22 C 1.46922 * 120.63117 * 197.12551 * 17 15 5 23 23 H 1.09003 * 109.58456 * 113.79704 * 22 17 15 24 24 C 1.53005 * 109.58487 * 353.52227 * 22 17 15 25 25 H 1.08996 * 109.47459 * 300.00150 * 1 2 3 26 26 H 1.09000 * 109.47052 * 60.00229 * 1 2 3 27 27 H 1.09002 * 109.46887 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47300 * 240.00522 * 2 1 3 29 29 H 1.08993 * 109.46968 * 60.00176 * 3 2 1 30 30 H 1.09004 * 109.46852 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47090 * 299.99747 * 3 2 1 32 32 H 1.09005 * 109.47132 * 55.00296 * 4 2 1 33 33 H 1.08997 * 109.47350 * 295.00110 * 4 2 1 34 34 H 1.08992 * 109.46856 * 329.99779 * 6 5 4 35 35 H 1.08994 * 109.46722 * 209.99842 * 6 5 4 36 36 H 0.97003 * 119.99931 * 0.02562 * 10 9 7 37 37 H 1.09001 * 109.58780 * 246.19945 * 18 17 15 38 38 H 1.08999 * 109.58716 * 6.62593 * 18 17 15 39 39 H 1.08993 * 109.63750 * 294.86699 * 19 18 17 40 40 H 1.09007 * 109.43012 * 174.72254 * 19 18 17 41 41 H 1.08997 * 109.45963 * 178.49446 * 20 19 18 42 42 H 1.08994 * 109.45699 * 58.52695 * 20 19 18 43 43 H 1.09003 * 109.49956 * 301.41442 * 21 20 19 44 44 H 1.09007 * 109.49867 * 181.31836 * 21 20 19 45 45 H 1.08998 * 109.47195 * 55.87935 * 24 22 17 46 46 H 1.08994 * 109.46991 * 175.87652 * 24 22 17 47 47 H 1.08996 * 109.47057 * 295.87572 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1905 6 6 4.3315 0.3378 1.5066 7 6 4.6434 0.3468 2.9810 8 1 4.2603 -0.4360 3.6188 9 6 5.4171 1.3550 3.5157 10 7 5.8832 2.3085 2.7391 11 14 5.8032 1.3667 5.3434 12 1 6.6451 2.5472 5.6640 13 1 6.5338 0.1248 5.7028 14 1 4.5372 1.4375 6.1163 15 6 4.0784 -1.9939 0.8458 16 8 5.2869 -2.1140 0.9031 17 7 3.3169 -3.0283 0.4376 18 6 1.9279 -2.8126 0.0101 19 6 1.7474 -3.4199 -1.3894 20 6 2.1747 -4.8892 -1.3604 21 6 3.6543 -4.9845 -0.9815 22 6 3.8582 -4.3941 0.4172 23 1 3.3345 -5.0056 1.1520 24 6 5.3512 -4.3590 0.7498 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7516 -0.1583 2.1369 34 1 3.7955 1.2494 1.2430 35 1 5.2605 0.2855 0.9391 36 1 5.6824 2.3026 1.7901 37 1 1.2499 -3.2978 0.7123 38 1 1.7180 -1.7435 -0.0242 39 1 2.3623 -2.8763 -2.1066 40 1 0.6996 -3.3514 -1.6820 41 1 2.0229 -5.3310 -2.3453 42 1 1.5762 -5.4270 -0.6252 43 1 4.2512 -4.4261 -1.7027 44 1 3.9640 -6.0297 -0.9839 45 1 5.4983 -3.8618 1.7086 46 1 5.7349 -5.3777 0.8062 47 1 5.8841 -3.8127 -0.0284 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848433668.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:09 Heat of formation + Delta-G solvation = 13.988624 kcal Electronic energy + Delta-G solvation = -24862.182331 eV Core-core repulsion = 21660.954808 eV Total energy + Delta-G solvation = -3201.227523 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.22829 -38.87170 -38.43145 -35.65159 -34.51211 -33.57303 -33.23077 -29.41096 -28.78043 -27.91990 -26.97489 -25.46228 -24.37308 -23.14722 -21.97609 -21.21410 -20.28614 -19.03556 -17.98323 -17.47204 -16.74943 -16.49276 -15.82892 -15.64543 -15.61168 -15.35368 -14.93375 -14.71152 -14.56626 -14.12722 -13.91181 -13.78838 -13.56028 -13.45477 -13.19272 -13.06083 -12.98747 -12.73307 -12.58415 -12.30131 -12.16781 -11.99360 -11.96153 -11.77859 -11.68232 -11.53509 -11.51982 -11.08429 -10.83884 -10.53988 -10.18821 -9.60995 -9.14003 -8.62405 -6.38495 1.46723 1.56231 1.74007 1.78293 2.23810 2.53752 2.92736 3.13409 3.60193 3.80887 3.86102 3.91428 4.00246 4.05310 4.14895 4.29801 4.38529 4.46496 4.50190 4.54397 4.63725 4.71719 4.76477 4.81447 4.85027 4.87160 4.93023 4.95788 5.01019 5.06149 5.07817 5.11828 5.17515 5.21299 5.25640 5.35890 5.40756 5.46190 5.49309 5.68615 5.83798 5.91137 6.03156 6.25655 6.51006 7.12928 7.36167 7.76063 8.69027 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016684 B = 0.006466 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.834126 B = 4329.382397 C = 5523.883452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C -0.156 4.156 4 C 0.077 3.923 5 N -0.612 5.612 6 C 0.253 3.747 7 C -0.611 4.611 8 H 0.035 0.965 9 C -0.032 4.032 10 N -0.932 5.932 11 Si 1.116 2.884 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.263 1.263 15 C 0.690 3.310 16 O -0.626 6.626 17 N -0.630 5.630 18 C 0.036 3.964 19 C -0.131 4.131 20 C -0.113 4.113 21 C -0.123 4.123 22 C 0.156 3.844 23 H 0.081 0.919 24 C -0.127 4.127 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.128 0.872 33 H 0.057 0.943 34 H 0.054 0.946 35 H -0.021 1.021 36 H 0.254 0.746 37 H 0.084 0.916 38 H 0.143 0.857 39 H 0.046 0.954 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.045 0.955 44 H 0.092 0.908 45 H 0.032 0.968 46 H 0.066 0.934 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.167 -12.842 -8.663 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.132 4.132 3 C -0.213 4.213 4 C -0.045 4.045 5 N -0.346 5.346 6 C 0.131 3.869 7 C -0.649 4.649 8 H 0.053 0.947 9 C -0.229 4.229 10 N -0.569 5.569 11 Si 0.937 3.063 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.188 1.188 15 C 0.393 3.607 16 O -0.507 6.507 17 N -0.369 5.369 18 C -0.084 4.084 19 C -0.169 4.169 20 C -0.151 4.151 21 C -0.162 4.162 22 C 0.053 3.947 23 H 0.099 0.901 24 C -0.184 4.184 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.145 0.855 33 H 0.075 0.925 34 H 0.071 0.929 35 H -0.003 1.003 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.159 0.841 39 H 0.065 0.935 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.110 0.890 45 H 0.051 0.949 46 H 0.085 0.915 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.733 -12.054 -7.451 20.443 hybrid contribution 0.100 -0.450 -1.114 1.205 sum -14.634 -12.504 -8.565 21.068 Atomic orbital electron populations 1.21808 0.91216 1.03577 1.03086 1.21620 0.98433 0.95898 0.97224 1.22119 1.00632 0.96549 1.01968 1.22833 0.79646 1.03677 0.98327 1.47244 1.07109 1.10409 1.69818 1.19169 0.89026 0.84347 0.94387 1.22575 1.35692 1.11813 0.94850 0.94667 1.27240 0.92993 0.92131 1.10573 1.70926 1.45133 1.34491 1.06389 0.82955 0.77403 0.76269 0.69646 1.20220 1.21083 1.18751 1.16372 0.84868 0.80993 0.78432 1.90878 1.15051 1.81959 1.62853 1.47295 1.14016 1.05859 1.69727 1.23842 0.81261 1.06819 0.96511 1.22037 1.02838 0.96443 0.95572 1.21509 0.94566 0.96265 1.02736 1.21959 0.98254 1.01358 0.94608 1.21221 0.94103 0.80982 0.98366 0.90114 1.21971 0.95383 0.99551 1.01503 0.92210 0.90798 0.90187 0.90512 0.93135 0.94305 0.91010 0.85504 0.92464 0.92862 1.00289 0.93678 0.89855 0.84051 0.93511 0.87903 0.90172 0.90384 0.93653 0.88978 0.94918 0.91515 0.94109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.10 71.98 0.65 -1.73 16 2 C -0.11 -2.95 2.15 -10.79 -0.02 -2.97 16 3 C -0.16 -4.89 8.08 71.98 0.58 -4.30 16 4 C 0.08 2.54 4.41 86.38 0.38 2.92 16 5 N -0.61 -27.64 2.46 -927.63 -2.28 -29.93 16 6 C 0.25 13.98 3.65 85.63 0.31 14.30 16 7 C -0.61 -37.10 9.39 25.60 0.24 -36.86 16 8 H 0.03 2.18 7.81 -2.91 -0.02 2.15 16 9 C -0.03 -1.91 5.46 84.66 0.46 -1.45 16 10 N -0.93 -59.40 13.65 21.45 0.29 -59.10 16 11 Si 1.12 53.40 29.90 68.60 2.05 55.45 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 14 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 15 C 0.69 31.73 7.85 179.05 1.41 33.13 16 16 O -0.63 -34.85 11.66 -3.96 -0.05 -34.89 16 17 N -0.63 -21.09 2.94 -853.96 -2.51 -23.61 16 18 C 0.04 0.83 4.30 86.51 0.37 1.20 16 19 C -0.13 -2.33 6.10 30.82 0.19 -2.14 16 20 C -0.11 -1.81 5.88 30.62 0.18 -1.63 16 21 C -0.12 -2.68 5.38 30.67 0.16 -2.51 16 22 C 0.16 4.53 3.48 44.98 0.16 4.69 16 23 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 24 C -0.13 -4.54 7.63 71.98 0.55 -3.99 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.08 0.99 7.89 -2.39 -0.02 0.97 16 28 H 0.08 2.02 6.95 -2.39 -0.02 2.00 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.53 4.91 -2.39 -0.01 1.52 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.13 3.45 3.93 -18.12 -0.07 3.38 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 2.86 4.36 -2.39 -0.01 2.85 16 35 H -0.02 -1.34 7.38 -2.39 -0.02 -1.36 16 36 H 0.25 16.36 7.22 -92.71 -0.67 15.69 16 37 H 0.08 1.57 7.70 -2.39 -0.02 1.55 16 38 H 0.14 3.40 0.67 -39.08 -0.03 3.37 16 39 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 40 H 0.10 1.19 8.14 -2.38 -0.02 1.18 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 45 H 0.03 1.44 6.52 -2.39 -0.02 1.42 16 46 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.04 1.68 6.98 -2.39 -0.02 1.66 16 Total: -1.00 -79.50 342.98 4.08 -75.42 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.95 Total: 18.00 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 5.63 Total: -1.34 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -4.50 Total: -112.64 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.05 Total: -34.89 kcal Atomic # 14 Polarization: 53.40 SS G_CDS: 2.05 Total: 55.45 kcal Total: -79.50 4.08 -75.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848433668.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.407 kcal (2) G-P(sol) polarization free energy of solvation -79.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds