Wall clock time and date at job start Tue Mar 31 2020 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46551 * 2 1 4 4 C 1.52998 * 109.47511 * 119.99728 * 2 1 3 5 5 N 1.46494 * 109.47503 * 175.90931 * 4 2 1 6 6 C 1.46497 * 119.99994 * 276.39654 * 5 4 2 7 7 C 1.50705 * 109.47121 * 283.81231 * 6 5 4 8 8 H 1.08010 * 119.99575 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00402 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99648 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00177 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47007 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47109 * 120.00144 * 11 9 7 14 14 H 1.48500 * 109.47142 * 240.00283 * 11 9 7 15 15 C 1.34773 * 120.00142 * 96.39210 * 5 4 2 16 16 O 1.21589 * 120.00071 * 352.59402 * 15 5 4 17 17 N 1.34781 * 120.00078 * 172.59529 * 15 5 4 18 18 C 1.46923 * 120.62963 * 341.86751 * 17 15 5 19 19 C 1.53187 * 108.77842 * 233.62928 * 18 17 15 20 20 C 1.53038 * 109.31338 * 305.37025 * 19 18 17 21 21 C 1.53039 * 109.53954 * 61.36670 * 20 19 18 22 22 C 1.46923 * 120.63085 * 161.89586 * 17 15 5 23 23 H 1.09005 * 109.70339 * 246.22539 * 22 17 15 24 24 C 1.53000 * 109.58832 * 6.57919 * 22 17 15 25 25 H 1.08998 * 109.47713 * 299.99648 * 1 2 3 26 26 H 1.08998 * 109.47651 * 60.00523 * 1 2 3 27 27 H 1.09011 * 109.46759 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47465 * 239.99914 * 2 1 3 29 29 H 1.09007 * 109.46863 * 185.25705 * 3 2 1 30 30 H 1.09001 * 109.47129 * 305.25704 * 3 2 1 31 31 H 1.09001 * 109.47556 * 65.26017 * 3 2 1 32 32 H 1.08999 * 109.47028 * 55.90603 * 4 2 1 33 33 H 1.09009 * 109.46829 * 295.90897 * 4 2 1 34 34 H 1.09000 * 109.47540 * 43.80964 * 6 5 4 35 35 H 1.09000 * 109.47428 * 163.81416 * 6 5 4 36 36 H 0.96996 * 119.99839 * 179.97438 * 10 9 7 37 37 H 1.09012 * 109.58307 * 113.84339 * 18 17 15 38 38 H 1.08998 * 109.58454 * 353.42388 * 18 17 15 39 39 H 1.08996 * 109.49838 * 185.41545 * 19 18 17 40 40 H 1.09003 * 109.52314 * 65.33729 * 19 18 17 41 41 H 1.09001 * 109.46038 * 301.33630 * 20 19 18 42 42 H 1.09006 * 109.45888 * 181.38248 * 20 19 18 43 43 H 1.09003 * 109.49722 * 178.68674 * 21 20 19 44 44 H 1.08995 * 109.50205 * 58.58457 * 21 20 19 45 45 H 1.09005 * 109.47561 * 181.59503 * 24 22 17 46 46 H 1.09007 * 109.46819 * 61.59862 * 24 22 17 47 47 H 1.08999 * 109.47640 * 301.59484 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5017 -0.8071 1.2010 6 6 4.1476 -1.8864 0.4500 7 6 4.0554 -3.1696 1.2350 8 1 3.5643 -3.1800 2.1970 9 6 4.5969 -4.3304 0.7248 10 7 5.1945 -4.3177 -0.4467 11 14 4.4820 -5.9210 1.6976 12 1 3.7673 -5.6695 2.9748 13 1 3.7390 -6.9333 0.9049 14 1 5.8489 -6.4243 1.9866 15 6 4.2522 0.1069 1.8474 16 8 3.7243 1.0766 2.3567 17 7 5.5878 -0.0540 1.9292 18 6 6.1998 -1.3676 1.6870 19 6 7.0832 -1.7286 2.8853 20 6 8.0895 -0.6018 3.1300 21 6 7.3399 0.6923 3.4550 22 6 6.4594 1.0807 2.2630 23 1 7.0894 1.3243 1.4075 24 6 5.6034 2.2940 2.6316 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1258 1.4441 -0.0942 30 1 1.6016 1.9828 -0.8392 31 1 1.7554 1.9285 0.9333 32 1 1.6181 -1.7255 1.2867 33 1 1.7378 -0.1666 2.1377 34 1 3.6470 -2.0112 -0.5101 35 1 5.1955 -1.6368 0.2837 36 1 5.5758 -5.1342 -0.8054 37 1 6.8085 -1.3260 0.7836 38 1 5.4186 -2.1185 1.5694 39 1 7.6180 -2.6551 2.6770 40 1 6.4607 -1.8590 3.7706 41 1 8.6956 -0.4557 2.2359 42 1 8.7354 -0.8672 3.9669 43 1 8.0575 1.4887 3.6521 44 1 6.7146 0.5395 4.3346 45 1 6.2512 3.1427 2.8514 46 1 5.0006 2.0603 3.5092 47 1 4.9484 2.5437 1.7969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848433669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:13 Heat of formation + Delta-G solvation = 5.994112 kcal Electronic energy + Delta-G solvation = -24954.188720 eV Core-core repulsion = 21752.614529 eV Total energy + Delta-G solvation = -3201.574191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.23064 -37.30499 -35.91790 -34.69137 -32.52425 -32.05370 -31.28591 -28.11624 -26.73217 -26.63714 -25.37351 -23.85116 -22.61840 -21.67394 -20.23890 -19.50263 -18.45624 -16.70087 -15.93865 -15.73424 -15.01008 -14.72453 -14.53728 -14.20905 -13.98598 -13.68189 -13.54494 -13.17364 -12.93615 -12.49081 -12.23191 -12.17636 -12.04362 -11.84020 -11.60880 -11.48750 -11.22667 -11.11189 -10.99114 -10.80796 -10.72871 -10.53402 -10.50317 -10.34086 -10.28798 -10.09572 -9.98906 -9.69449 -8.86684 -8.71552 -8.31348 -7.83638 -7.35764 -6.30937 -4.39626 3.14421 3.24431 3.28462 3.54999 4.03074 4.21602 4.74041 4.96424 5.20338 5.26956 5.36139 5.40084 5.45405 5.60872 5.64844 5.78090 5.86658 5.99739 6.06215 6.09406 6.13626 6.17292 6.20589 6.27262 6.28979 6.36570 6.40617 6.47227 6.50400 6.53062 6.56691 6.66123 6.78222 6.82498 6.91002 6.92717 6.98418 7.26589 7.29014 7.47208 7.59572 7.72971 7.87798 8.10056 8.64746 8.93038 9.26041 9.55822 10.71670 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011109 B = 0.009399 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.841572 B = 2978.483605 C = 5054.007147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C -0.129 4.129 4 C 0.145 3.855 5 N -0.613 5.613 6 C 0.205 3.795 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.071 3.929 10 N -0.876 5.876 11 Si 0.894 3.106 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.280 1.280 15 C 0.710 3.290 16 O -0.609 6.609 17 N -0.625 5.625 18 C 0.034 3.966 19 C -0.128 4.128 20 C -0.120 4.120 21 C -0.126 4.126 22 C 0.159 3.841 23 H 0.056 0.944 24 C -0.131 4.131 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.025 0.975 35 H 0.071 0.929 36 H 0.268 0.732 37 H 0.047 0.953 38 H 0.197 0.803 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.030 0.970 46 H 0.074 0.926 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.675 6.540 2.567 7.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C -0.186 4.186 4 C 0.021 3.979 5 N -0.347 5.347 6 C 0.085 3.915 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.135 4.135 10 N -0.512 5.512 11 Si 0.721 3.279 12 H -0.194 1.194 13 H -0.207 1.207 14 H -0.206 1.206 15 C 0.414 3.586 16 O -0.492 6.492 17 N -0.362 5.362 18 C -0.085 4.085 19 C -0.167 4.167 20 C -0.158 4.158 21 C -0.165 4.165 22 C 0.055 3.945 23 H 0.074 0.926 24 C -0.188 4.188 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.212 0.788 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.049 0.951 46 H 0.093 0.907 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.491 6.929 2.685 7.447 hybrid contribution 0.322 -1.104 0.309 1.191 sum 0.813 5.825 2.993 6.599 Atomic orbital electron populations 1.21743 0.95566 1.01386 1.01148 1.21498 0.94922 0.97013 0.99784 1.21684 1.00926 0.95437 1.00568 1.21157 0.79871 0.99962 0.96942 1.47367 1.05422 1.29538 1.52356 1.20338 0.95949 0.83841 0.91363 1.21397 1.37705 0.93194 1.05534 0.91612 1.25014 0.94507 0.99123 0.94829 1.69941 1.35544 1.28805 1.16921 0.86486 0.78181 0.82924 0.80321 1.19418 1.20674 1.20579 1.15915 0.81043 0.82582 0.79078 1.90810 1.72308 1.31893 1.54140 1.47149 1.04386 1.10182 1.74483 1.24080 1.02386 0.87564 0.94491 1.21886 0.97484 0.97391 0.99933 1.21555 0.97857 0.95672 1.00672 1.21962 0.98448 0.97379 0.98713 1.20935 0.91147 0.86653 0.95773 0.92599 1.22142 0.97998 0.94377 1.04304 0.92961 0.93178 0.92781 0.91322 0.93095 0.94489 0.92412 0.90988 0.91184 0.95707 0.91181 0.92222 0.93529 0.78788 0.91614 0.92347 0.92463 0.92847 0.91947 0.91795 0.95109 0.90677 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.19 37.16 0.34 -1.60 16 2 C -0.11 -1.89 3.12 -90.62 -0.28 -2.17 16 3 C -0.13 -2.18 7.91 37.16 0.29 -1.88 16 4 C 0.15 2.77 4.91 -4.05 -0.02 2.75 16 5 N -0.61 -13.07 2.26 -196.21 -0.44 -13.51 16 6 C 0.20 4.76 4.62 -5.19 -0.02 4.74 16 7 C -0.54 -13.22 6.84 -34.44 -0.24 -13.46 16 8 H 0.07 1.66 7.81 -52.48 -0.41 1.25 16 9 C 0.07 1.75 5.45 -17.82 -0.10 1.66 16 10 N -0.88 -22.56 13.29 55.43 0.74 -21.83 16 11 Si 0.89 19.46 29.54 -169.99 -5.02 14.44 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 15 C 0.71 15.22 6.76 -86.92 -0.59 14.64 16 16 O -0.61 -13.37 10.06 5.29 0.05 -13.32 16 17 N -0.62 -12.43 2.93 -177.81 -0.52 -12.95 16 18 C 0.03 0.70 4.32 -3.71 -0.02 0.68 16 19 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 20 C -0.12 -1.79 5.88 -26.69 -0.16 -1.95 16 21 C -0.13 -1.89 5.37 -26.61 -0.14 -2.04 16 22 C 0.16 2.72 3.49 -67.60 -0.24 2.48 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 24 C -0.13 -2.21 7.62 37.16 0.28 -1.93 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 28 H 0.07 1.24 7.90 -51.93 -0.41 0.83 16 29 H 0.05 0.97 6.89 -51.93 -0.36 0.61 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.01 7.81 -51.93 -0.41 0.61 16 32 H 0.07 1.39 7.95 -51.93 -0.41 0.97 16 33 H 0.07 1.35 7.35 -51.92 -0.38 0.97 16 34 H 0.02 0.62 7.90 -51.93 -0.41 0.21 16 35 H 0.07 1.69 4.01 -60.79 -0.24 1.44 16 36 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 37 H 0.05 0.97 7.64 -51.92 -0.40 0.57 16 38 H 0.20 4.44 1.84 -78.14 -0.14 4.30 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 1.40 6.79 -51.93 -0.35 1.05 16 47 H 0.07 1.24 6.75 -51.93 -0.35 0.89 16 LS Contribution 347.63 15.07 5.24 5.24 Total: -1.00 -25.51 347.63 -9.48 -34.99 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -8.48 Total: 7.47 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.04 Total: -0.53 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.23 Total: -48.29 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.05 Total: -13.32 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -25.51 -9.48 -34.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848433669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.984 kcal (2) G-P(sol) polarization free energy of solvation -25.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds