Wall clock time and date at job start Tue Mar 31 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46551 * 2 1 4 4 C 1.52998 * 109.47511 * 119.99728 * 2 1 3 5 5 N 1.46494 * 109.47503 * 175.90931 * 4 2 1 6 6 C 1.46497 * 119.99994 * 276.39654 * 5 4 2 7 7 C 1.50705 * 109.47121 * 283.81231 * 6 5 4 8 8 H 1.08010 * 119.99575 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00402 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99648 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00177 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47007 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47109 * 120.00144 * 11 9 7 14 14 H 1.48500 * 109.47142 * 240.00283 * 11 9 7 15 15 C 1.34773 * 120.00142 * 96.39210 * 5 4 2 16 16 O 1.21589 * 120.00071 * 352.59402 * 15 5 4 17 17 N 1.34781 * 120.00078 * 172.59529 * 15 5 4 18 18 C 1.46923 * 120.62963 * 341.86751 * 17 15 5 19 19 C 1.53187 * 108.77842 * 233.62928 * 18 17 15 20 20 C 1.53038 * 109.31338 * 305.37025 * 19 18 17 21 21 C 1.53039 * 109.53954 * 61.36670 * 20 19 18 22 22 C 1.46923 * 120.63085 * 161.89586 * 17 15 5 23 23 H 1.09005 * 109.70339 * 246.22539 * 22 17 15 24 24 C 1.53000 * 109.58832 * 6.57919 * 22 17 15 25 25 H 1.08998 * 109.47713 * 299.99648 * 1 2 3 26 26 H 1.08998 * 109.47651 * 60.00523 * 1 2 3 27 27 H 1.09011 * 109.46759 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47465 * 239.99914 * 2 1 3 29 29 H 1.09007 * 109.46863 * 185.25705 * 3 2 1 30 30 H 1.09001 * 109.47129 * 305.25704 * 3 2 1 31 31 H 1.09001 * 109.47556 * 65.26017 * 3 2 1 32 32 H 1.08999 * 109.47028 * 55.90603 * 4 2 1 33 33 H 1.09009 * 109.46829 * 295.90897 * 4 2 1 34 34 H 1.09000 * 109.47540 * 43.80964 * 6 5 4 35 35 H 1.09000 * 109.47428 * 163.81416 * 6 5 4 36 36 H 0.96996 * 119.99839 * 179.97438 * 10 9 7 37 37 H 1.09012 * 109.58307 * 113.84339 * 18 17 15 38 38 H 1.08998 * 109.58454 * 353.42388 * 18 17 15 39 39 H 1.08996 * 109.49838 * 185.41545 * 19 18 17 40 40 H 1.09003 * 109.52314 * 65.33729 * 19 18 17 41 41 H 1.09001 * 109.46038 * 301.33630 * 20 19 18 42 42 H 1.09006 * 109.45888 * 181.38248 * 20 19 18 43 43 H 1.09003 * 109.49722 * 178.68674 * 21 20 19 44 44 H 1.08995 * 109.50205 * 58.58457 * 21 20 19 45 45 H 1.09005 * 109.47561 * 181.59503 * 24 22 17 46 46 H 1.09007 * 109.46819 * 61.59862 * 24 22 17 47 47 H 1.08999 * 109.47640 * 301.59484 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5017 -0.8071 1.2010 6 6 4.1476 -1.8864 0.4500 7 6 4.0554 -3.1696 1.2350 8 1 3.5643 -3.1800 2.1970 9 6 4.5969 -4.3304 0.7248 10 7 5.1945 -4.3177 -0.4467 11 14 4.4820 -5.9210 1.6976 12 1 3.7673 -5.6695 2.9748 13 1 3.7390 -6.9333 0.9049 14 1 5.8489 -6.4243 1.9866 15 6 4.2522 0.1069 1.8474 16 8 3.7243 1.0766 2.3567 17 7 5.5878 -0.0540 1.9292 18 6 6.1998 -1.3676 1.6870 19 6 7.0832 -1.7286 2.8853 20 6 8.0895 -0.6018 3.1300 21 6 7.3399 0.6923 3.4550 22 6 6.4594 1.0807 2.2630 23 1 7.0894 1.3243 1.4075 24 6 5.6034 2.2940 2.6316 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1258 1.4441 -0.0942 30 1 1.6016 1.9828 -0.8392 31 1 1.7554 1.9285 0.9333 32 1 1.6181 -1.7255 1.2867 33 1 1.7378 -0.1666 2.1377 34 1 3.6470 -2.0112 -0.5101 35 1 5.1955 -1.6368 0.2837 36 1 5.5758 -5.1342 -0.8054 37 1 6.8085 -1.3260 0.7836 38 1 5.4186 -2.1185 1.5694 39 1 7.6180 -2.6551 2.6770 40 1 6.4607 -1.8590 3.7706 41 1 8.6956 -0.4557 2.2359 42 1 8.7354 -0.8672 3.9669 43 1 8.0575 1.4887 3.6521 44 1 6.7146 0.5395 4.3346 45 1 6.2512 3.1427 2.8514 46 1 5.0006 2.0603 3.5092 47 1 4.9484 2.5437 1.7969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848433669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:12 Heat of formation + Delta-G solvation = -5.196859 kcal Electronic energy + Delta-G solvation = -24954.673997 eV Core-core repulsion = 21752.614529 eV Total energy + Delta-G solvation = -3202.059468 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.84491 -38.77177 -37.59437 -36.19946 -34.35676 -33.47814 -32.76344 -29.91034 -28.14634 -27.97725 -26.89844 -25.49326 -24.29767 -23.11364 -21.64084 -20.93067 -20.06891 -18.60654 -17.55728 -17.38293 -16.62040 -16.39554 -16.09101 -15.64347 -15.40775 -15.15438 -14.98345 -14.66912 -14.39646 -14.13591 -13.82085 -13.67740 -13.53603 -13.18824 -13.04390 -12.93215 -12.80678 -12.68735 -12.59763 -12.23315 -12.18562 -12.15148 -11.92210 -11.78057 -11.70777 -11.51929 -11.45511 -11.43758 -10.62977 -10.52116 -9.98089 -9.46275 -9.01939 -8.21428 -6.36754 1.40412 1.45525 1.54988 1.98803 2.32598 2.41285 3.00648 3.13508 3.90899 3.96388 4.00926 4.08696 4.11871 4.23668 4.26129 4.42693 4.51154 4.61734 4.65150 4.71910 4.82994 4.84776 4.90788 4.94042 4.97980 5.01515 5.05040 5.07723 5.11491 5.12804 5.18416 5.23590 5.28937 5.32987 5.45649 5.46887 5.50292 5.54715 5.61451 5.72481 5.84185 5.99087 6.11159 6.38372 6.71332 7.17396 7.35280 7.87268 8.80392 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011109 B = 0.009399 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.841572 B = 2978.483605 C = 5054.007147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.108 4.108 3 C -0.117 4.117 4 C 0.143 3.857 5 N -0.619 5.619 6 C 0.224 3.776 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.035 3.965 10 N -0.903 5.903 11 Si 0.950 3.050 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.274 1.274 15 C 0.702 3.298 16 O -0.618 6.618 17 N -0.628 5.628 18 C 0.036 3.964 19 C -0.126 4.126 20 C -0.114 4.114 21 C -0.119 4.119 22 C 0.149 3.851 23 H 0.066 0.934 24 C -0.118 4.118 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.022 0.978 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.000 1.000 35 H 0.063 0.937 36 H 0.271 0.729 37 H 0.037 0.963 38 H 0.172 0.828 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.333 7.030 3.355 7.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 C -0.174 4.174 4 C 0.020 3.980 5 N -0.353 5.353 6 C 0.103 3.897 7 C -0.579 4.579 8 H 0.072 0.928 9 C -0.168 4.168 10 N -0.540 5.540 11 Si 0.775 3.225 12 H -0.196 1.196 13 H -0.204 1.204 14 H -0.199 1.199 15 C 0.405 3.595 16 O -0.501 6.501 17 N -0.365 5.365 18 C -0.085 4.085 19 C -0.164 4.164 20 C -0.151 4.151 21 C -0.157 4.157 22 C 0.046 3.954 23 H 0.084 0.916 24 C -0.175 4.175 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.018 0.982 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.188 0.812 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.152 7.433 3.481 8.288 hybrid contribution 0.115 -1.202 0.053 1.208 sum 1.267 6.231 3.534 7.275 Atomic orbital electron populations 1.21685 0.92734 1.02180 1.02477 1.21442 0.97228 0.96374 0.97698 1.21557 0.99120 0.95628 1.01124 1.21265 0.78844 0.99885 0.98055 1.47430 1.06344 1.29190 1.52305 1.20023 0.95220 0.84170 0.90293 1.21394 1.37566 0.93937 1.05002 0.92822 1.25593 0.94125 1.01546 0.95510 1.70015 1.36301 1.29631 1.18053 0.85617 0.78279 0.79634 0.78928 1.19594 1.20435 1.19883 1.16110 0.81703 0.82469 0.79191 1.90805 1.72700 1.32034 1.54535 1.47298 1.04173 1.10929 1.74121 1.23784 1.01879 0.87306 0.95492 1.21829 0.97691 0.98877 0.98033 1.21519 0.97237 0.94302 1.02050 1.21919 0.98443 0.98460 0.96909 1.21245 0.91156 0.85743 0.97264 0.91604 1.21944 0.97899 0.95461 1.02233 0.92110 0.91333 0.92310 0.92890 0.95885 0.92142 0.93110 0.91627 0.91518 0.98231 0.91950 0.91960 0.94441 0.81172 0.91378 0.93443 0.91673 0.90377 0.88604 0.92911 0.91770 0.92806 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.19 71.98 0.66 -2.82 16 2 C -0.11 -3.64 3.12 -10.80 -0.03 -3.67 16 3 C -0.12 -3.95 7.91 71.98 0.57 -3.38 16 4 C 0.14 5.61 4.91 86.38 0.42 6.03 16 5 N -0.62 -27.29 2.26 -892.95 -2.02 -29.31 16 6 C 0.22 10.80 4.62 85.64 0.40 11.20 16 7 C -0.54 -27.14 6.84 25.60 0.18 -26.97 16 8 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 9 C 0.04 1.77 5.45 84.65 0.46 2.23 16 10 N -0.90 -47.13 13.29 21.45 0.28 -46.85 16 11 Si 0.95 39.96 29.54 68.60 2.03 41.99 16 12 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 13 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 14 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 15 C 0.70 30.77 6.76 179.05 1.21 31.98 16 16 O -0.62 -27.60 10.06 -4.00 -0.04 -27.64 16 17 N -0.63 -25.16 2.93 -834.74 -2.45 -27.61 16 18 C 0.04 1.46 4.32 86.36 0.37 1.84 16 19 C -0.13 -4.36 6.08 30.67 0.19 -4.18 16 20 C -0.11 -3.09 5.88 30.62 0.18 -2.91 16 21 C -0.12 -3.24 5.37 30.67 0.16 -3.08 16 22 C 0.15 4.89 3.49 44.98 0.16 5.05 16 23 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 24 C -0.12 -3.86 7.62 71.98 0.55 -3.31 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.05 1.96 7.90 -2.39 -0.02 1.94 16 29 H 0.02 0.87 6.89 -2.38 -0.02 0.86 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.77 7.81 -2.39 -0.02 1.75 16 32 H 0.07 2.60 7.95 -2.39 -0.02 2.59 16 33 H 0.07 2.63 7.35 -2.38 -0.02 2.61 16 34 H 0.00 -0.02 7.90 -2.39 -0.02 -0.04 16 35 H 0.06 3.13 4.01 -10.71 -0.04 3.08 16 36 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 37 H 0.04 1.58 7.64 -2.38 -0.02 1.56 16 38 H 0.17 7.98 1.84 -27.01 -0.05 7.93 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 46 H 0.05 1.98 6.79 -2.38 -0.02 1.96 16 47 H 0.04 1.59 6.75 -2.39 -0.02 1.58 16 Total: -1.00 -55.56 347.63 4.12 -51.44 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.84 Total: 29.97 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 5.47 Total: 8.01 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -4.18 Total: -103.77 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.04 Total: -27.64 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -55.56 4.12 -51.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848433669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.247 kcal (2) G-P(sol) polarization free energy of solvation -55.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds