Wall clock time and date at job start Tue Mar 31 2020 06:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.45891 * 2 1 4 4 C 1.53043 * 109.45992 * 119.96302 * 2 1 3 5 5 C 1.53123 * 109.27487 * 179.19875 * 4 2 1 6 6 H 1.08994 * 109.52218 * 62.31221 * 5 4 2 7 7 C 1.50690 * 109.52103 * 182.44400 * 5 4 2 8 8 O 1.21284 * 120.00384 * 359.97438 * 7 5 4 9 9 N 1.34782 * 120.00045 * 179.97438 * 7 5 4 10 10 C 1.46497 * 120.00040 * 179.97438 * 9 7 5 11 11 C 1.53005 * 109.46969 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47440 * 300.00123 * 11 10 9 13 13 C 1.52996 * 109.47053 * 60.00352 * 11 10 9 14 14 C 1.50702 * 109.47210 * 180.02562 * 11 10 9 15 15 H 1.08001 * 119.99585 * 0.02562 * 14 11 10 16 16 C 1.37876 * 119.99988 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00219 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99699 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.47493 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46859 * 119.99966 * 18 16 14 21 21 H 1.48502 * 109.47133 * 240.00020 * 18 16 14 22 22 C 1.53122 * 109.15961 * 302.34802 * 5 4 2 23 23 C 1.53036 * 109.28039 * 57.65379 * 22 5 4 24 24 N 1.46844 * 109.46334 * 240.01902 * 2 1 3 25 25 C 1.46901 * 110.99853 * 54.14542 * 24 2 1 26 26 H 1.09000 * 109.47007 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47128 * 299.97707 * 1 2 3 28 28 H 1.08996 * 109.47530 * 59.98059 * 1 2 3 29 29 H 1.09001 * 109.50250 * 299.13702 * 4 2 1 30 30 H 1.08996 * 109.50226 * 59.21921 * 4 2 1 31 31 H 0.96998 * 119.99869 * 0.02562 * 9 7 5 32 32 H 1.08998 * 109.47870 * 300.00117 * 10 9 7 33 33 H 1.09001 * 109.46841 * 60.00832 * 10 9 7 34 34 H 1.09007 * 109.46663 * 59.99671 * 12 11 10 35 35 H 1.08996 * 109.47284 * 179.97438 * 12 11 10 36 36 H 1.09002 * 109.47436 * 300.00442 * 12 11 10 37 37 H 1.09002 * 109.46831 * 59.99890 * 13 11 10 38 38 H 1.08996 * 109.47540 * 179.97438 * 13 11 10 39 39 H 1.08994 * 109.47251 * 300.00053 * 13 11 10 40 40 H 0.96997 * 119.99913 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.50536 * 177.59871 * 22 5 4 42 42 H 1.09003 * 109.50602 * 297.71393 * 22 5 4 43 43 H 1.09005 * 109.46443 * 180.80381 * 23 22 5 44 44 H 1.09006 * 109.46092 * 60.83372 * 23 22 5 45 45 H 1.09002 * 109.47401 * 59.99789 * 25 24 2 46 46 H 1.09001 * 109.46874 * 299.99802 * 25 24 2 47 47 H 1.09004 * 109.46970 * 179.97438 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5710 -0.7358 1.2358 6 1 3.9456 0.2873 1.2684 7 6 4.0783 -1.4963 2.4337 8 8 3.2936 -1.9790 3.2225 9 7 5.4041 -1.6402 2.6286 10 6 5.8973 -2.3792 3.7934 11 6 7.4272 -2.3947 3.7772 12 6 7.9169 -3.0747 2.4971 13 6 7.9523 -0.9584 3.8246 14 6 7.9346 -3.1554 4.9751 15 1 7.2358 -3.5851 5.6775 16 6 9.2910 -3.3026 5.1743 17 7 10.1419 -2.7797 4.3187 18 14 9.9198 -4.2449 6.6596 19 1 8.7683 -4.7302 7.4620 20 1 10.7287 -5.4041 6.2042 21 1 10.7624 -3.3501 7.4931 22 6 4.0548 -1.4186 -0.0464 23 6 3.4865 -0.6778 -1.2589 24 7 2.0193 -0.6919 -1.1993 25 6 1.4373 -0.1108 -2.4165 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5135 0.8902 28 1 -0.3634 0.5141 -0.8898 29 1 1.6894 -0.1978 2.1400 30 1 1.6653 -1.7443 1.2583 31 1 6.0318 -1.2539 1.9979 32 1 5.5482 -1.8950 4.7054 33 1 5.5237 -3.4026 3.7593 34 1 7.5498 -2.5249 1.6304 35 1 9.0067 -3.0854 2.4853 36 1 7.5427 -4.0980 2.4632 37 1 7.6035 -0.4740 4.7366 38 1 9.0422 -0.9694 3.8135 39 1 7.5854 -0.4086 2.9580 40 1 11.0961 -2.8830 4.4591 41 1 5.1439 -1.3946 -0.0829 42 1 3.7126 -2.4535 -0.0591 43 1 3.8175 -1.1701 -2.1734 44 1 3.8403 0.3533 -1.2531 45 1 1.7119 0.9419 -2.4838 46 1 0.3517 -0.2015 -2.3792 47 1 1.8168 -0.6415 -3.2897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891520566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:14 Heat of formation + Delta-G solvation = -53.888274 kcal Electronic energy + Delta-G solvation = -23314.134431 eV Core-core repulsion = 20109.963545 eV Total energy + Delta-G solvation = -3204.170886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.11031 -38.50944 -36.34320 -33.81401 -33.17257 -32.49072 -30.78100 -27.83174 -26.76992 -25.72724 -25.54643 -24.88141 -23.06150 -22.14593 -20.08089 -19.53554 -18.76124 -16.88121 -16.00410 -15.75707 -15.59699 -15.14403 -14.93961 -14.62568 -14.39189 -14.14699 -13.65037 -13.19602 -12.92638 -12.82521 -12.48623 -12.32457 -12.18995 -12.17091 -11.97905 -11.83788 -11.37670 -11.27006 -11.18169 -10.92200 -10.87542 -10.67204 -10.63389 -10.48874 -10.38392 -10.19866 -9.63225 -9.47026 -9.14160 -8.77028 -8.49483 -8.43956 -8.28095 -6.02234 -4.12106 3.10146 3.27153 3.35755 3.40497 3.69833 3.77023 4.40307 4.59769 4.67536 4.79725 4.90615 5.10471 5.14722 5.22011 5.24664 5.24783 5.38908 5.41457 5.52747 5.56978 5.63259 5.67478 5.75190 5.87477 5.95456 6.04384 6.15008 6.26401 6.34485 6.37555 6.51742 6.80050 6.82392 6.89920 6.94121 6.94546 7.02305 7.07074 7.36163 7.55818 7.69738 8.01136 8.08720 8.17712 8.39124 8.75875 8.89305 9.53835 10.99210 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039006 B = 0.003347 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.662313 B = 8363.080579 C = 8763.473059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.081 3.919 3 H 0.039 0.961 4 C -0.089 4.089 5 C -0.109 4.109 6 H 0.089 0.911 7 C 0.509 3.491 8 O -0.552 6.552 9 N -0.716 5.716 10 C 0.131 3.869 11 C 0.056 3.944 12 C -0.130 4.130 13 C -0.130 4.130 14 C -0.505 4.505 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.108 4.108 23 C 0.059 3.941 24 N -0.539 5.539 25 C 0.022 3.978 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.397 0.603 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.006 0.994 35 H 0.085 0.915 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.085 0.915 39 H 0.006 0.994 40 H 0.259 0.741 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.034 0.966 45 H 0.022 0.978 46 H 0.072 0.928 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.945 7.280 -12.850 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.027 4.027 3 H 0.057 0.943 4 C -0.127 4.127 5 C -0.131 4.131 6 H 0.107 0.893 7 C 0.294 3.706 8 O -0.431 6.431 9 N -0.367 5.367 10 C 0.009 3.991 11 C 0.055 3.945 12 C -0.188 4.188 13 C -0.188 4.188 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.146 4.146 23 C -0.069 4.069 24 N -0.264 5.264 25 C -0.126 4.126 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.232 0.768 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.025 0.975 35 H 0.104 0.896 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.104 0.896 39 H 0.025 0.975 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.052 0.948 45 H 0.041 0.959 46 H 0.090 0.910 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.438 6.448 -12.256 19.297 hybrid contribution 1.077 0.575 0.437 1.297 sum -12.361 7.023 -11.819 18.489 Atomic orbital electron populations 1.21906 0.94207 1.02771 1.01596 1.21672 0.95498 0.95249 0.90328 0.94280 1.21425 0.92722 1.02496 0.96074 1.21388 0.97669 1.00099 0.93950 0.89299 1.20464 0.82846 0.80641 0.86602 1.90657 1.55809 1.49656 1.46950 1.46328 1.06235 1.55669 1.28442 1.21698 0.97125 0.94519 0.85765 1.18355 0.87254 0.93713 0.95184 1.21820 1.04415 0.97556 0.94959 1.21824 1.04474 0.96122 0.96390 1.21041 0.91715 1.33723 1.07889 0.92400 1.24880 0.96830 0.95461 0.96365 1.69812 1.02026 1.45030 1.35633 0.86523 0.78877 0.79667 0.82870 1.19746 1.21062 1.21070 1.21584 1.00294 1.00634 0.92103 1.22080 0.87096 0.98889 0.98864 1.61949 1.07234 1.55138 1.02124 1.22415 1.00727 0.97055 0.92422 0.91583 0.92041 0.92585 0.90886 0.90163 0.76824 0.92858 0.92803 0.97533 0.89635 0.95451 0.95492 0.89606 0.97548 0.93083 0.90710 0.90345 0.90366 0.94773 0.95901 0.90956 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.76 37.16 0.33 -0.96 16 2 C 0.08 0.83 2.44 -67.72 -0.17 0.66 16 3 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 4 C -0.09 -1.11 3.96 -26.65 -0.11 -1.22 16 5 C -0.11 -1.42 2.59 -91.65 -0.24 -1.65 16 6 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 7 C 0.51 8.82 7.16 -10.99 -0.08 8.74 16 8 O -0.55 -11.63 15.98 5.55 0.09 -11.54 16 9 N -0.72 -12.74 4.86 -60.30 -0.29 -13.03 16 10 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 11 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 12 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 13 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 14 C -0.51 -13.29 8.01 -34.44 -0.28 -13.57 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 17 N -0.89 -23.61 9.35 55.43 0.52 -23.09 16 18 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.11 -1.24 5.26 -26.65 -0.14 -1.38 16 23 C 0.06 0.57 5.46 -3.83 -0.02 0.55 16 24 N -0.54 -5.49 4.75 -234.91 -1.12 -6.60 16 25 C 0.02 0.18 9.05 60.07 0.54 0.72 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.42 6.33 -51.93 -0.33 0.09 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.14 8.04 -51.93 -0.42 0.73 16 31 H 0.40 6.36 5.65 -40.82 -0.23 6.13 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 35 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 39 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 40 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 41 H 0.07 0.80 7.66 -51.93 -0.40 0.41 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 44 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.07 0.53 6.21 -51.93 -0.32 0.21 16 47 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 LS Contribution 354.50 15.07 5.34 5.34 Total: -1.00 -28.50 354.50 -8.72 -37.22 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.49 Total: 3.65 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 0.26 Total: -7.70 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -0.89 Total: -42.73 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.50 -8.72 -37.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891520566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.667 kcal (2) G-P(sol) polarization free energy of solvation -28.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds