Wall clock time and date at job start Tue Mar 31 2020 06:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47456 * 2 1 4 4 C 1.53002 * 109.47221 * 240.00181 * 2 1 3 5 5 C 1.50702 * 109.47292 * 64.99414 * 4 2 1 6 6 H 1.07997 * 119.99934 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00034 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00045 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99889 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47051 * 60.00267 * 9 7 5 11 11 H 1.48499 * 109.46986 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47364 * 300.00678 * 9 7 5 13 13 C 1.53001 * 109.47586 * 119.99843 * 2 1 3 14 14 N 1.46896 * 109.47206 * 297.94500 * 13 2 1 15 15 C 1.46898 * 110.99617 * 271.60195 * 14 13 2 16 16 H 1.09006 * 109.38682 * 166.87856 * 15 14 13 17 17 C 1.53006 * 109.39137 * 47.08761 * 15 14 13 18 18 C 1.50258 * 109.98265 * 286.92900 * 15 14 13 19 19 O 1.21283 * 118.62840 * 162.79681 * 18 15 14 20 20 N 1.33718 * 122.74744 * 342.82603 * 18 15 14 21 21 C 1.46496 * 118.53528 * 181.68638 * 20 18 15 22 22 C 1.46006 * 122.92631 * 1.63551 * 20 18 15 23 23 H 1.09003 * 109.38716 * 221.69338 * 22 20 18 24 24 C 1.53006 * 109.35637 * 102.05192 * 22 20 18 25 25 C 1.47184 * 111.00361 * 148.71271 * 14 13 2 26 26 H 1.09004 * 109.59578 * 174.29306 * 25 14 13 27 27 C 1.53005 * 109.59271 * 294.58975 * 25 14 13 28 28 H 1.08994 * 109.47155 * 60.00167 * 1 2 3 29 29 H 1.08999 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46875 * 299.99796 * 1 2 3 31 31 H 1.09001 * 109.47295 * 185.00138 * 4 2 1 32 32 H 1.09005 * 109.46853 * 305.00113 * 4 2 1 33 33 H 0.97000 * 120.00050 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47484 * 177.93950 * 13 2 1 35 35 H 1.09007 * 109.46557 * 57.94080 * 13 2 1 36 36 H 1.08998 * 109.46788 * 55.78137 * 17 15 14 37 37 H 1.08991 * 109.47886 * 175.78258 * 17 15 14 38 38 H 1.08997 * 109.46565 * 295.78604 * 17 15 14 39 39 H 1.08994 * 109.47231 * 359.97438 * 21 20 18 40 40 H 1.09001 * 109.47506 * 119.99846 * 21 20 18 41 41 H 1.09003 * 109.46587 * 239.99781 * 21 20 18 42 42 H 1.08993 * 109.46893 * 321.08785 * 24 22 20 43 43 H 1.08997 * 109.47171 * 81.09480 * 24 22 20 44 44 H 1.09008 * 109.46750 * 201.08956 * 24 22 20 45 45 H 1.09002 * 109.46566 * 52.25668 * 27 25 14 46 46 H 1.08993 * 109.47195 * 292.26048 * 27 25 14 47 47 H 1.08998 * 109.46994 * 172.25680 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0570 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 2.6764 -1.5187 -3.8512 9 14 1.4995 0.5633 -5.2496 10 1 2.0916 1.9237 -5.1866 11 1 1.9944 -0.1368 -6.4621 12 1 0.0195 0.6700 -5.3096 13 6 2.0401 -0.7212 1.2492 14 7 1.5915 -0.0006 2.4481 15 6 2.5548 1.0416 2.8271 16 1 2.0993 1.7053 3.5621 17 6 2.9443 1.8485 1.5869 18 6 3.7843 0.4134 3.4198 19 8 4.7967 1.0768 3.4960 20 7 3.8092 -0.8468 3.8663 21 6 5.0480 -1.3541 4.4615 22 6 2.6563 -1.7393 3.7882 23 1 2.5728 -2.3046 4.7164 24 6 2.8449 -2.7102 2.6208 25 6 1.3781 -0.9273 3.5716 26 1 1.1449 -0.3610 4.4733 27 6 0.2194 -1.8716 3.2448 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.1263 -0.7995 -1.2056 32 1 1.6053 -1.7198 -1.2952 33 1 2.9237 -1.8416 -4.7318 34 1 3.1295 -0.7533 1.2309 35 1 1.6469 -1.7377 1.2679 36 1 2.0462 2.2507 1.1183 37 1 3.6005 2.6686 1.8781 38 1 3.4637 1.2009 0.8806 39 1 5.8061 -0.5712 4.4451 40 1 4.8592 -1.6559 5.4917 41 1 5.4004 -2.2128 3.8900 42 1 3.2976 -2.1842 1.7803 43 1 3.4950 -3.5285 2.9301 44 1 1.8761 -3.1096 2.3203 45 1 0.3940 -2.3389 2.2756 46 1 -0.7120 -1.3065 3.2132 47 1 0.1511 -2.6421 4.0127 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895923241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:09 Heat of formation + Delta-G solvation = -4.155547 kcal Electronic energy + Delta-G solvation = -24786.501085 eV Core-core repulsion = 21584.486772 eV Total energy + Delta-G solvation = -3202.014313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.47053 -38.19533 -36.27724 -34.37052 -33.01242 -32.04759 -29.72855 -28.76412 -27.79781 -26.71260 -25.82562 -24.55909 -23.18261 -21.49522 -21.10077 -19.16668 -18.21138 -17.05522 -16.73721 -16.17276 -16.00733 -15.35638 -14.61821 -14.58279 -14.35219 -13.84559 -13.58088 -13.11073 -13.07341 -12.70508 -12.49093 -12.43730 -12.24927 -11.89992 -11.74725 -11.70880 -11.58709 -11.38095 -11.26807 -11.09688 -11.00183 -10.82652 -10.75365 -10.59228 -10.40512 -10.23818 -9.90393 -9.37409 -9.00898 -8.92121 -8.78813 -8.29557 -7.99200 -5.95253 -3.95986 2.63066 2.87434 3.36250 3.40644 3.43156 3.88711 4.33222 4.50163 4.66138 4.74088 4.91095 5.13188 5.20728 5.22892 5.28247 5.40284 5.41189 5.45031 5.53629 5.60626 5.67641 5.73402 5.78613 5.80335 5.93329 6.01926 6.06427 6.15451 6.24150 6.27888 6.34763 6.39263 6.51695 6.58562 6.76332 7.01044 7.03741 7.21332 7.26365 7.36029 7.39301 7.72083 7.88180 8.05135 8.15533 8.49732 9.10291 9.67394 11.16265 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021412 B = 0.004962 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.342614 B = 5641.143603 C = 5864.830222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.097 4.097 3 H 0.074 0.926 4 C 0.029 3.971 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.041 3.959 14 N -0.510 5.510 15 C 0.074 3.926 16 H 0.109 0.891 17 C -0.141 4.141 18 C 0.490 3.510 19 O -0.550 6.550 20 N -0.606 5.606 21 C 0.073 3.927 22 C 0.112 3.888 23 H 0.082 0.918 24 C -0.196 4.196 25 C 0.068 3.932 26 H 0.086 0.914 27 C -0.144 4.144 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.009 0.991 32 H 0.013 0.987 33 H 0.259 0.741 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.268 -1.617 18.018 18.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.115 4.115 3 H 0.092 0.908 4 C -0.009 4.009 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.085 4.085 14 N -0.234 5.234 15 C -0.038 4.038 16 H 0.127 0.873 17 C -0.198 4.198 18 C 0.277 3.723 19 O -0.426 6.426 20 N -0.339 5.339 21 C -0.070 4.070 22 C 0.006 3.994 23 H 0.100 0.900 24 C -0.254 4.254 25 C -0.041 4.041 26 H 0.104 0.896 27 C -0.201 4.201 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.028 0.972 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.115 -1.145 17.810 17.972 hybrid contribution 0.659 -0.207 -0.624 0.931 sum -1.456 -1.351 17.186 17.300 Atomic orbital electron populations 1.21560 0.95944 1.00141 1.00171 1.21668 0.95976 1.00570 0.93312 0.90787 1.19100 0.95703 0.95432 0.90646 1.21186 1.34496 1.08232 0.90928 0.92616 1.25007 0.95355 0.95079 0.99048 1.69951 1.39126 1.21276 1.23410 0.86717 0.78869 0.80174 0.82585 1.20310 1.21450 1.20295 1.23162 0.97425 0.98382 0.89544 1.62785 1.43888 1.12725 1.04005 1.21933 0.87809 0.94732 0.99303 0.87344 1.22059 1.02495 0.99806 0.95430 1.21474 0.91740 0.81555 0.77557 1.90658 1.34737 1.60844 1.56400 1.47474 1.13407 1.12380 1.60653 1.21694 0.87660 1.00489 0.97137 1.21756 0.86170 0.91668 0.99775 0.89971 1.23138 1.03437 0.99382 0.99403 1.22093 0.93278 0.93662 0.95055 0.89556 1.21928 0.97477 0.98419 1.02284 0.92924 0.94621 0.93810 0.97245 0.96906 0.93111 0.94100 0.89725 0.89803 0.91639 0.90987 0.89308 0.92565 0.92321 0.89533 0.92937 0.89972 0.90923 0.91141 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 8.87 37.16 0.33 -1.88 16 2 C -0.10 -1.88 1.94 -90.62 -0.18 -2.05 16 3 H 0.07 1.47 4.21 -51.93 -0.22 1.25 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.06 8.41 -34.44 -0.29 -14.35 16 6 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.04 0.66 1.65 -3.83 -0.01 0.65 16 14 N -0.51 -6.87 3.91 -220.14 -0.86 -7.73 16 15 C 0.07 1.04 2.99 -69.08 -0.21 0.83 16 16 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 17 C -0.14 -2.16 7.12 37.16 0.26 -1.90 16 18 C 0.49 7.54 6.20 -11.67 -0.07 7.47 16 19 O -0.55 -10.15 15.39 5.56 0.09 -10.06 16 20 N -0.61 -7.85 2.80 -174.81 -0.49 -8.34 16 21 C 0.07 0.82 10.44 59.84 0.62 1.45 16 22 C 0.11 1.20 2.73 -68.21 -0.19 1.01 16 23 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 24 C -0.20 -2.27 7.65 37.16 0.28 -1.99 16 25 C 0.07 0.74 2.82 -67.57 -0.19 0.55 16 26 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 27 C -0.14 -1.37 8.51 37.16 0.32 -1.05 16 28 H 0.05 1.05 6.95 -51.93 -0.36 0.69 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.71 7.66 -51.93 -0.40 0.31 16 31 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.04 0.73 4.70 -51.93 -0.24 0.49 16 35 H 0.08 1.31 3.60 -51.92 -0.19 1.12 16 36 H 0.08 1.26 6.78 -51.93 -0.35 0.91 16 37 H 0.06 0.98 7.94 -51.93 -0.41 0.56 16 38 H 0.07 1.28 5.84 -51.93 -0.30 0.98 16 39 H 0.09 1.15 6.67 -51.93 -0.35 0.80 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.26 4.67 -51.93 -0.24 1.02 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.89 4.81 -51.92 -0.25 0.64 16 45 H 0.07 0.80 4.79 -51.93 -0.25 0.55 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 338.93 15.07 5.11 5.11 Total: -1.00 -31.31 338.93 -7.69 -38.99 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.71 Total: 0.68 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 0.47 Total: -9.18 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -0.61 Total: -42.19 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.31 -7.69 -38.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895923241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.839 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds