Wall clock time and date at job start Tue Mar 31 2020 06:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46995 * 2 1 4 4 C 1.52991 * 109.47317 * 239.99749 * 2 1 3 5 5 C 1.50699 * 109.47205 * 64.99601 * 4 2 1 6 6 H 1.08002 * 120.00473 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00112 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00010 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99979 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46922 * 60.00374 * 9 7 5 11 11 H 1.48505 * 109.46695 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47057 * 300.00580 * 9 7 5 13 13 C 1.53000 * 109.46882 * 119.99346 * 2 1 3 14 14 N 1.46892 * 109.47386 * 295.76302 * 13 2 1 15 15 C 1.46907 * 111.00225 * 268.47963 * 14 13 2 16 16 H 1.08994 * 109.38985 * 166.77453 * 15 14 13 17 17 C 1.53008 * 109.38237 * 47.08769 * 15 14 13 18 18 C 1.50253 * 109.98201 * 286.93475 * 15 14 13 19 19 O 1.21275 * 118.62741 * 162.79005 * 18 15 14 20 20 N 1.33715 * 122.74885 * 343.07973 * 18 15 14 21 21 C 1.46499 * 118.53739 * 181.38804 * 20 18 15 22 22 C 1.45997 * 122.93566 * 1.12105 * 20 18 15 23 23 H 1.09002 * 109.07279 * 102.36644 * 22 20 18 24 24 C 1.53005 * 109.51862 * 222.03058 * 22 20 18 25 25 C 1.47194 * 111.00150 * 145.59511 * 14 13 2 26 26 H 1.08995 * 109.59651 * 174.14148 * 25 14 13 27 27 C 1.53006 * 109.59131 * 294.44063 * 25 14 13 28 28 H 1.09003 * 109.47490 * 60.00214 * 1 2 3 29 29 H 1.09004 * 109.47176 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47536 * 300.00030 * 1 2 3 31 31 H 1.09000 * 109.47683 * 184.99946 * 4 2 1 32 32 H 1.09004 * 109.47009 * 305.00193 * 4 2 1 33 33 H 0.96996 * 120.00286 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.46980 * 175.76068 * 13 2 1 35 35 H 1.09001 * 109.47019 * 55.76456 * 13 2 1 36 36 H 1.08993 * 109.46865 * 291.94350 * 17 15 14 37 37 H 1.09007 * 109.46664 * 51.94333 * 17 15 14 38 38 H 1.08997 * 109.46714 * 171.93729 * 17 15 14 39 39 H 1.09000 * 109.46906 * 359.97438 * 21 20 18 40 40 H 1.08997 * 109.47865 * 119.99465 * 21 20 18 41 41 H 1.09003 * 109.46952 * 239.99564 * 21 20 18 42 42 H 1.09002 * 109.46780 * 180.74974 * 24 22 20 43 43 H 1.09000 * 109.47690 * 300.74974 * 24 22 20 44 44 H 1.08997 * 109.47124 * 60.75204 * 24 22 20 45 45 H 1.09003 * 109.46689 * 59.99722 * 27 25 14 46 46 H 1.08993 * 109.47576 * 179.97438 * 27 25 14 47 47 H 1.09006 * 109.46935 * 300.00167 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6413 0.0569 -2.4765 6 1 1.0805 0.9744 -2.3758 7 6 1.9932 -0.4019 -3.7282 8 7 2.6765 -1.5189 -3.8510 9 14 1.4996 0.5631 -5.2496 10 1 2.0917 1.9235 -5.1866 11 1 1.9946 -0.1371 -6.4621 12 1 0.0196 0.6698 -5.3095 13 6 2.0399 -0.7211 1.2493 14 7 1.6356 0.0280 2.4465 15 6 2.6712 0.9936 2.8381 16 1 2.2596 1.6888 3.5696 17 6 3.1322 1.7721 1.6042 18 6 3.8441 0.2727 3.4399 19 8 4.9029 0.8576 3.5277 20 7 3.7709 -0.9886 3.8777 21 6 4.9639 -1.5919 4.4769 22 6 2.5535 -1.7898 3.7903 23 1 2.6443 -2.4860 2.9565 24 6 2.3643 -2.5757 5.0894 25 6 1.3423 -0.8830 3.5648 26 1 1.1465 -0.3034 4.4668 27 6 0.1166 -1.7337 3.2255 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.1263 -0.7995 -1.2055 32 1 1.6053 -1.7198 -1.2950 33 1 2.9238 -1.8419 -4.7316 34 1 3.1273 -0.7874 1.2122 35 1 1.6159 -1.7245 1.2882 36 1 3.6681 1.1025 0.9315 37 1 2.2644 2.1855 1.0902 38 1 3.7925 2.5828 1.9120 39 1 5.7790 -0.8682 4.4707 40 1 4.7460 -1.8853 5.5038 41 1 5.2544 -2.4710 3.9017 42 1 1.4624 -3.1836 5.0182 43 1 3.2266 -3.2224 5.2517 44 1 2.2691 -1.8808 5.9238 45 1 0.3164 -2.3165 2.3263 46 1 -0.0987 -2.4078 4.0545 47 1 -0.7410 -1.0831 3.0537 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895923242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:12 Heat of formation + Delta-G solvation = -30.132632 kcal Electronic energy + Delta-G solvation = -24457.861879 eV Core-core repulsion = 21254.721115 eV Total energy + Delta-G solvation = -3203.140764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.24106 -37.98865 -36.53762 -34.40214 -32.90384 -32.01418 -30.20903 -28.23086 -27.80586 -26.74992 -25.88071 -24.18667 -23.14429 -21.82413 -21.07723 -19.43255 -18.06675 -17.15059 -16.48087 -16.17337 -15.87422 -15.67528 -14.62416 -14.49139 -14.16201 -13.76041 -13.53882 -13.47403 -13.03511 -12.75364 -12.58604 -12.37059 -12.23315 -12.00800 -11.90335 -11.77423 -11.70953 -11.48386 -11.29047 -11.27151 -11.03672 -10.87851 -10.79743 -10.61733 -10.44047 -10.24209 -10.00431 -9.42635 -9.02484 -8.94475 -8.78422 -8.29479 -8.06917 -5.94965 -3.95826 2.63631 2.85980 3.36433 3.40790 3.43265 3.89226 4.29571 4.50407 4.59866 4.72917 4.84953 5.06268 5.14101 5.23813 5.30084 5.35774 5.37690 5.41029 5.46087 5.55595 5.61458 5.66835 5.75518 5.79099 5.85790 5.94027 6.04386 6.12813 6.14631 6.23250 6.30788 6.38456 6.52020 6.57843 6.75572 6.99280 7.03101 7.21037 7.25499 7.35196 7.38133 7.72519 7.88398 8.05401 8.15381 8.49646 9.10482 9.67522 11.16602 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021954 B = 0.004684 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.103144 B = 5976.324541 C = 6297.963141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.088 4.088 3 H 0.072 0.928 4 C 0.028 3.972 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.052 3.948 14 N -0.513 5.513 15 C 0.074 3.926 16 H 0.109 0.891 17 C -0.140 4.140 18 C 0.490 3.510 19 O -0.550 6.550 20 N -0.606 5.606 21 C 0.071 3.929 22 C 0.106 3.894 23 H 0.078 0.922 24 C -0.160 4.160 25 C 0.070 3.930 26 H 0.086 0.914 27 C -0.141 4.141 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.042 0.958 31 H 0.010 0.990 32 H 0.013 0.987 33 H 0.259 0.741 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.635 -1.551 18.987 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.107 4.107 3 H 0.090 0.910 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.074 4.074 14 N -0.236 5.236 15 C -0.038 4.038 16 H 0.127 0.873 17 C -0.197 4.197 18 C 0.277 3.723 19 O -0.426 6.426 20 N -0.340 5.340 21 C -0.071 4.071 22 C 0.001 3.999 23 H 0.096 0.904 24 C -0.218 4.218 25 C -0.039 4.039 26 H 0.104 0.896 27 C -0.199 4.199 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.028 0.972 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.438 -1.084 18.765 18.954 hybrid contribution 0.613 -0.267 -0.676 0.951 sum -1.824 -1.351 18.089 18.231 Atomic orbital electron populations 1.21581 0.95953 1.00152 1.00209 1.21503 0.95860 1.00270 0.93044 0.90982 1.19108 0.95769 0.95438 0.90646 1.21184 1.34525 1.08232 0.90914 0.92595 1.25012 0.95344 0.95074 0.99055 1.69953 1.39114 1.21282 1.23424 0.86713 0.78868 0.80174 0.82572 1.20293 1.21443 1.20290 1.22513 0.98111 0.97082 0.89736 1.62818 1.40073 1.16560 1.04162 1.21951 0.87671 0.94939 0.99202 0.87327 1.22010 1.02192 1.00033 0.95457 1.21469 0.91523 0.81595 0.77696 1.90657 1.30164 1.65327 1.56493 1.47479 1.12347 1.13290 1.60848 1.21698 0.88871 0.99159 0.97407 1.21853 0.84974 0.93966 0.99143 0.90374 1.22152 1.02746 1.00280 0.96642 1.22120 0.93610 0.93198 0.94999 0.89551 1.21858 0.96820 0.99413 1.01815 0.92832 0.94578 0.93862 0.97183 0.96911 0.93101 0.94455 0.91290 0.91315 0.89628 0.91634 0.89344 0.92290 0.92387 0.90673 0.91953 0.92094 0.91595 0.92064 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 8.88 37.16 0.33 -1.90 16 2 C -0.09 -1.73 2.04 -90.63 -0.18 -1.91 16 3 H 0.07 1.44 4.52 -51.93 -0.23 1.21 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.13 8.41 -34.44 -0.29 -14.42 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.05 0.86 2.51 -3.83 -0.01 0.85 16 14 N -0.51 -7.01 3.99 -220.14 -0.88 -7.89 16 15 C 0.07 1.05 2.99 -69.07 -0.21 0.84 16 16 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 17 C -0.14 -2.16 7.14 37.16 0.27 -1.90 16 18 C 0.49 7.60 6.21 -11.67 -0.07 7.53 16 19 O -0.55 -10.19 15.46 5.56 0.09 -10.10 16 20 N -0.61 -7.90 3.11 -174.82 -0.54 -8.44 16 21 C 0.07 0.80 9.61 59.85 0.58 1.38 16 22 C 0.11 1.14 2.25 -68.21 -0.15 0.99 16 23 H 0.08 0.94 6.99 -51.93 -0.36 0.57 16 24 C -0.16 -1.25 8.35 37.16 0.31 -0.94 16 25 C 0.07 0.76 2.24 -67.56 -0.15 0.61 16 26 H 0.09 0.87 8.06 -51.93 -0.42 0.45 16 27 C -0.14 -1.37 8.99 37.16 0.33 -1.04 16 28 H 0.05 1.07 6.95 -51.93 -0.36 0.71 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.70 7.73 -51.93 -0.40 0.30 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.04 0.69 6.22 -51.93 -0.32 0.36 16 35 H 0.07 1.11 5.20 -51.93 -0.27 0.84 16 36 H 0.07 1.23 6.26 -51.93 -0.33 0.91 16 37 H 0.09 1.31 6.45 -51.93 -0.33 0.97 16 38 H 0.06 0.97 8.05 -51.93 -0.42 0.55 16 39 H 0.09 1.15 6.67 -51.93 -0.35 0.80 16 40 H 0.06 0.53 6.93 -51.93 -0.36 0.17 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.49 6.76 -51.93 -0.35 0.14 16 43 H 0.06 0.46 6.90 -51.93 -0.36 0.10 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.73 6.28 -51.93 -0.33 0.40 16 46 H 0.06 0.45 6.78 -51.93 -0.35 0.10 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 345.33 15.07 5.20 5.20 Total: -1.00 -31.59 345.33 -7.90 -39.49 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -8.01 Total: -0.85 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 0.53 Total: -7.83 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -0.69 Total: -42.61 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.59 -7.90 -39.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895923242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.358 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds