Wall clock time and date at job start Tue Mar 31 2020 06:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46779 * 2 1 4 4 C 1.52998 * 109.46968 * 239.99899 * 2 1 3 5 5 C 1.50706 * 109.47145 * 65.00354 * 4 2 1 6 6 H 1.08002 * 119.99868 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00087 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00085 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99890 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47151 * 90.00114 * 9 7 5 11 11 H 1.48504 * 109.46815 * 209.99376 * 9 7 5 12 12 H 1.48494 * 109.47387 * 329.99562 * 9 7 5 13 13 C 1.53002 * 109.46979 * 120.00037 * 2 1 3 14 14 N 1.46891 * 109.47127 * 298.39643 * 13 2 1 15 15 C 1.46903 * 111.00155 * 183.66881 * 14 13 2 16 16 H 1.08994 * 109.38570 * 53.50293 * 15 14 13 17 17 C 1.53006 * 109.29995 * 293.76764 * 15 14 13 18 18 C 1.50256 * 109.98311 * 173.66635 * 15 14 13 19 19 O 1.21279 * 118.62513 * 162.79542 * 18 15 14 20 20 N 1.33719 * 122.74977 * 342.77506 * 18 15 14 21 21 C 1.46498 * 118.53999 * 181.71189 * 20 18 15 22 22 C 1.46010 * 122.92490 * 1.98293 * 20 18 15 23 23 H 1.09004 * 109.37682 * 101.74108 * 22 20 18 24 24 C 1.52997 * 109.37900 * 221.38717 * 22 20 18 25 25 C 1.47192 * 111.00185 * 306.55756 * 14 13 2 26 26 H 1.09004 * 109.59398 * 47.71074 * 25 14 13 27 27 C 1.53000 * 109.59182 * 287.41042 * 25 14 13 28 28 H 1.08998 * 109.47143 * 304.84632 * 1 2 3 29 29 H 1.09001 * 109.47238 * 64.84969 * 1 2 3 30 30 H 1.09000 * 109.46940 * 184.84345 * 1 2 3 31 31 H 1.09002 * 109.46751 * 184.99609 * 4 2 1 32 32 H 1.08994 * 109.47454 * 304.99973 * 4 2 1 33 33 H 0.96996 * 120.00239 * 179.97438 * 8 7 5 34 34 H 1.08993 * 109.46778 * 178.39573 * 13 2 1 35 35 H 1.08998 * 109.47197 * 58.39663 * 13 2 1 36 36 H 1.09007 * 109.46787 * 299.53034 * 17 15 14 37 37 H 1.09003 * 109.47076 * 59.52739 * 17 15 14 38 38 H 1.08999 * 109.47346 * 179.53248 * 17 15 14 39 39 H 1.09009 * 109.46683 * 359.97438 * 21 20 18 40 40 H 1.09000 * 109.47472 * 239.99930 * 21 20 18 41 41 H 1.08999 * 109.47573 * 119.99292 * 21 20 18 42 42 H 1.09007 * 109.47008 * 60.00528 * 24 22 20 43 43 H 1.08997 * 109.47709 * 179.97438 * 24 22 20 44 44 H 1.09001 * 109.47246 * 300.00870 * 24 22 20 45 45 H 1.08994 * 109.47427 * 53.80352 * 27 25 14 46 46 H 1.09000 * 109.47004 * 173.80541 * 27 25 14 47 47 H 1.09000 * 109.47126 * 293.79864 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 1.6449 0.2773 -4.7994 9 14 2.9635 -1.9883 -3.9028 10 1 2.0242 -3.1326 -4.0201 11 1 3.8124 -1.9181 -5.1192 12 1 3.8251 -2.1757 -2.7080 13 6 2.0400 -0.7213 1.2493 14 7 1.5822 -0.0068 2.4483 15 6 2.1256 -0.6214 3.6670 16 1 3.2099 -0.6934 3.5833 17 6 1.5349 -2.0231 3.8330 18 6 1.7721 0.2139 4.8648 19 8 1.8563 -0.2856 5.9668 20 7 1.3688 1.4851 4.7668 21 6 1.0839 2.2259 5.9981 22 6 1.1943 2.1658 3.4870 23 1 0.1336 2.2017 3.2381 24 6 1.7368 3.5925 3.5927 25 6 1.9538 1.4162 2.3885 26 1 1.6854 1.8234 1.4136 27 6 3.4608 1.5626 2.6085 28 1 -0.3633 0.5872 0.8434 29 1 -0.3634 0.4367 -0.9302 30 1 -0.3633 -1.0240 0.0868 31 1 3.1263 -0.7994 -1.2056 32 1 1.6054 -1.7198 -1.2952 33 1 1.8928 -0.0452 -5.6799 34 1 3.1295 -0.7462 1.2350 35 1 1.6534 -1.7403 1.2638 36 1 0.4507 -1.9523 3.9206 37 1 1.7905 -2.6303 2.9646 38 1 1.9426 -2.4850 4.7322 39 1 1.2569 1.5800 6.8590 40 1 0.0442 2.5532 5.9930 41 1 1.7383 3.0955 6.0586 42 1 2.7964 3.5604 3.8465 43 1 1.6077 4.1020 2.6378 44 1 1.1934 4.1312 4.3689 45 1 3.9946 0.9282 1.9011 46 1 3.7510 2.6020 2.4552 47 1 3.7103 1.2622 3.6262 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895923243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:14 Heat of formation + Delta-G solvation = -30.308887 kcal Electronic energy + Delta-G solvation = -24255.259295 eV Core-core repulsion = 21052.110888 eV Total energy + Delta-G solvation = -3203.148407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.17392 -38.23669 -36.58989 -34.74848 -32.51165 -32.22137 -30.20071 -28.83782 -27.66335 -27.27276 -25.57042 -24.80212 -23.02429 -21.86550 -21.23322 -19.05743 -17.70285 -17.19445 -16.94732 -16.54530 -15.81144 -15.74151 -14.91869 -14.50303 -14.05546 -13.97351 -13.75161 -13.33768 -13.26063 -13.03832 -12.62143 -12.47202 -12.36546 -12.24941 -12.13634 -12.02887 -11.91205 -11.67676 -11.53234 -11.26279 -11.12943 -10.99828 -10.88469 -10.70506 -10.43636 -9.87338 -9.76259 -9.67426 -9.42551 -9.08189 -8.80211 -8.54513 -8.29036 -6.05085 -4.02310 2.56295 2.88980 3.29414 3.37323 3.39851 3.76359 4.36764 4.44133 4.48181 4.81858 4.88936 5.04470 5.07912 5.17526 5.25799 5.28679 5.29038 5.34637 5.38549 5.51472 5.54521 5.61326 5.70363 5.73453 5.75671 5.83757 5.87130 5.94727 5.96506 6.12289 6.17994 6.24692 6.30437 6.36999 6.49061 6.76526 6.92413 6.99968 7.11536 7.14297 7.25821 7.33357 7.42532 7.78950 8.09545 8.53223 9.00021 9.57907 11.08227 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026007 B = 0.004469 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.369709 B = 6263.277454 C = 6807.559880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.064 0.936 4 C -0.008 4.008 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.053 3.947 14 N -0.517 5.517 15 C 0.064 3.936 16 H 0.074 0.926 17 C -0.131 4.131 18 C 0.530 3.470 19 O -0.556 6.556 20 N -0.599 5.599 21 C 0.071 3.929 22 C 0.151 3.849 23 H 0.083 0.917 24 C -0.167 4.167 25 C 0.057 3.943 26 H 0.119 0.881 27 C -0.186 4.186 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.012 0.988 32 H 0.012 0.988 33 H 0.262 0.738 34 H 0.033 0.967 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.653 3.808 18.509 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.095 4.095 3 H 0.083 0.917 4 C -0.046 4.046 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.544 5.544 9 Si 0.705 3.295 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.074 4.074 14 N -0.242 5.242 15 C -0.047 4.047 16 H 0.092 0.908 17 C -0.189 4.189 18 C 0.318 3.682 19 O -0.434 6.434 20 N -0.332 5.332 21 C -0.071 4.071 22 C 0.047 3.953 23 H 0.101 0.899 24 C -0.225 4.225 25 C -0.052 4.052 26 H 0.137 0.863 27 C -0.244 4.244 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.182 3.495 18.906 19.227 hybrid contribution 1.422 -0.686 -0.426 1.635 sum 1.604 2.809 18.480 18.761 Atomic orbital electron populations 1.21620 0.95059 1.00735 1.00895 1.21141 0.96510 0.99051 0.92766 0.91748 1.19600 0.95723 0.95968 0.93344 1.21097 1.35350 1.09610 0.89042 0.90815 1.25012 0.95621 0.96867 0.95966 1.69906 1.47090 1.39331 0.98027 0.86825 0.80658 0.84439 0.77606 1.20338 1.21524 1.19146 1.22472 0.97443 0.98499 0.88950 1.62803 1.58204 1.01519 1.01639 1.21708 0.99121 0.95366 0.88487 0.90828 1.21673 1.01886 0.92987 1.02320 1.20107 0.75902 0.81574 0.90624 1.90662 1.54367 1.70773 1.27581 1.47413 1.66335 1.11998 1.07431 1.21716 1.00476 0.96874 0.88082 1.21155 1.00432 0.91741 0.81949 0.89940 1.22247 1.01935 0.95147 1.03150 1.22328 0.93294 0.89492 1.00082 0.86324 1.22474 0.97158 1.03151 1.01657 0.93951 0.91920 0.94008 0.96944 0.96966 0.92806 0.94830 0.90371 0.91647 0.91380 0.91326 0.89447 0.92311 0.92187 0.91692 0.90564 0.91870 0.91579 0.91290 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.87 37.16 0.33 -1.88 16 2 C -0.08 -1.36 1.90 -90.62 -0.17 -1.54 16 3 H 0.06 1.16 5.97 -51.93 -0.31 0.85 16 4 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 5 C -0.51 -13.88 8.89 -34.44 -0.31 -14.18 16 6 H 0.07 2.14 7.32 -52.49 -0.38 1.75 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 9 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 13 C 0.05 0.80 3.89 -3.83 -0.01 0.78 16 14 N -0.52 -6.87 3.92 -220.04 -0.86 -7.73 16 15 C 0.06 0.85 1.88 -69.07 -0.13 0.72 16 16 H 0.07 0.96 6.85 -51.93 -0.36 0.60 16 17 C -0.13 -1.63 8.84 37.16 0.33 -1.30 16 18 C 0.53 7.43 6.26 -11.67 -0.07 7.36 16 19 O -0.56 -9.22 15.31 5.56 0.09 -9.14 16 20 N -0.60 -7.03 2.94 -174.71 -0.51 -7.54 16 21 C 0.07 0.69 9.59 59.85 0.57 1.26 16 22 C 0.15 1.58 3.27 -68.12 -0.22 1.36 16 23 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 24 C -0.17 -1.35 7.88 37.16 0.29 -1.05 16 25 C 0.06 0.68 2.29 -67.48 -0.15 0.52 16 26 H 0.12 1.52 5.52 -51.93 -0.29 1.24 16 27 C -0.19 -2.10 7.35 37.16 0.27 -1.82 16 28 H 0.04 0.66 7.80 -51.93 -0.40 0.25 16 29 H 0.06 1.25 6.82 -51.93 -0.35 0.90 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 32 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.03 0.50 6.85 -51.93 -0.36 0.15 16 35 H 0.08 1.17 6.63 -51.93 -0.34 0.83 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.80 6.60 -51.93 -0.34 0.45 16 38 H 0.07 0.85 7.82 -51.93 -0.41 0.44 16 39 H 0.09 0.97 6.67 -51.92 -0.35 0.63 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.47 6.97 -51.93 -0.36 0.11 16 42 H 0.06 0.54 6.51 -51.92 -0.34 0.20 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.44 6.94 -51.93 -0.36 0.08 16 45 H 0.07 0.81 6.73 -51.93 -0.35 0.46 16 46 H 0.07 0.68 6.79 -51.93 -0.35 0.33 16 47 H 0.05 0.60 6.02 -51.93 -0.31 0.29 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -30.77 342.83 -7.50 -38.28 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -8.01 Total: -0.86 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 0.53 Total: -8.30 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: -0.60 Total: -41.78 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.77 -7.50 -38.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895923243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.967 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds