Wall clock time and date at job start Tue Mar 31 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.45851 * 2 1 4 4 C 1.53039 * 109.46235 * 240.02735 * 2 1 3 5 5 C 1.53119 * 109.27956 * 180.80574 * 4 2 1 6 6 C 1.53117 * 109.15968 * 57.65544 * 5 4 2 7 7 C 1.53043 * 109.27755 * 302.34587 * 6 5 4 8 8 H 1.09006 * 109.45890 * 299.16142 * 7 6 5 9 9 C 1.53004 * 109.45031 * 179.19008 * 7 6 5 10 10 N 1.46839 * 109.52214 * 59.18066 * 7 6 5 11 11 N 1.36601 * 110.99880 * 174.16393 * 10 7 6 12 12 C 1.34784 * 119.99699 * 236.02514 * 11 10 7 13 13 O 1.21282 * 119.99807 * 355.03339 * 12 11 10 14 14 C 1.50700 * 119.99978 * 175.04313 * 12 11 10 15 15 C 1.52998 * 109.47128 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47165 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47165 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.46854 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00518 * 359.97438 * 18 17 16 20 20 C 1.37888 * 119.99654 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99897 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99937 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46947 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47278 * 119.99639 * 22 20 18 25 25 H 1.48495 * 109.47272 * 240.00222 * 22 20 18 26 26 H 1.09004 * 109.46768 * 305.18671 * 1 2 3 27 27 H 1.09006 * 109.46692 * 65.18159 * 1 2 3 28 28 H 1.08999 * 109.47342 * 185.18558 * 1 2 3 29 29 H 1.09006 * 109.50296 * 60.86397 * 4 2 1 30 30 H 1.09003 * 109.50271 * 300.75079 * 4 2 1 31 31 H 1.08998 * 109.52034 * 297.75008 * 5 4 2 32 32 H 1.09000 * 109.52262 * 177.56067 * 5 4 2 33 33 H 1.09002 * 109.50060 * 182.40647 * 6 5 4 34 34 H 1.09000 * 109.50103 * 62.28779 * 6 5 4 35 35 H 1.08997 * 109.47047 * 299.94870 * 9 7 6 36 36 H 1.08996 * 109.47075 * 59.95456 * 9 7 6 37 37 H 1.08999 * 109.46496 * 179.97438 * 9 7 6 38 38 H 0.96990 * 120.00447 * 56.01429 * 11 10 7 39 39 H 1.09004 * 109.47382 * 59.99549 * 14 12 11 40 40 H 1.09003 * 109.46756 * 299.99504 * 14 12 11 41 41 H 1.08994 * 109.47263 * 299.99533 * 15 14 12 42 42 H 1.09004 * 109.46871 * 59.99832 * 15 14 12 43 43 H 1.09000 * 109.47860 * 300.00522 * 16 15 14 44 44 H 1.09004 * 109.46946 * 60.00390 * 16 15 14 45 45 H 1.08994 * 109.47263 * 300.00045 * 17 16 15 46 46 H 1.08995 * 109.47345 * 60.00613 * 17 16 15 47 47 H 0.96998 * 120.00003 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5710 -0.7361 -1.2356 6 6 4.0548 -1.4189 0.0466 7 6 3.4864 -0.6777 1.2591 8 1 3.8404 0.3532 1.2531 9 6 3.9511 -1.3690 2.5425 10 7 2.0193 -0.6918 1.1993 11 7 1.4781 -0.1513 2.3311 12 6 0.6038 -0.8655 3.0674 13 8 0.2284 -1.9513 2.6786 14 6 0.0924 -0.3148 4.3737 15 6 -0.8790 -1.3151 5.0034 16 6 -1.3977 -0.7563 6.3299 17 6 -2.3687 -1.7569 6.9600 18 6 -2.8800 -1.2061 8.2662 19 1 -2.5456 -0.2394 8.6126 20 6 -3.7741 -1.9370 9.0197 21 7 -4.1802 -3.1148 8.5987 22 14 -4.4074 -1.2547 10.6392 23 1 -3.8015 0.0786 10.8854 24 1 -5.8851 -1.1222 10.5765 25 1 -4.0395 -2.1776 11.7428 26 1 -0.3633 0.5922 0.8399 27 1 -0.3633 0.4314 -0.9328 28 1 -0.3634 -1.0234 0.0929 29 1 1.6895 -0.1981 -2.1400 30 1 1.6658 -1.7447 -1.2577 31 1 3.9456 0.2870 -1.2672 32 1 3.9379 -1.2863 -2.1021 33 1 5.1439 -1.3947 0.0831 34 1 3.7124 -2.4536 0.0593 35 1 3.5969 -2.3998 2.5487 36 1 5.0401 -1.3586 2.5870 37 1 3.5468 -0.8411 3.4062 38 1 1.7231 0.7463 2.6050 39 1 -0.4238 0.6282 4.1933 40 1 0.9305 -0.1467 5.0500 41 1 -1.7171 -1.4828 4.3270 42 1 -0.3632 -2.2583 5.1837 43 1 -0.5596 -0.5887 7.0063 44 1 -1.9135 0.1870 6.1499 45 1 -3.2069 -1.9247 6.2839 46 1 -1.8526 -2.6999 7.1401 47 1 -4.8094 -3.6288 9.1285 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907988168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:22 Heat of formation + Delta-G solvation = -41.776152 kcal Electronic energy + Delta-G solvation = -22677.215976 eV Core-core repulsion = 19473.570311 eV Total energy + Delta-G solvation = -3203.645665 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.60413 -38.52699 -35.14013 -34.67478 -33.85588 -32.59821 -31.08744 -29.62494 -28.21893 -26.55864 -25.49849 -23.10699 -21.93441 -21.49766 -20.57375 -20.04518 -19.84218 -17.44264 -16.64997 -16.41905 -16.12117 -15.34371 -14.59058 -14.56937 -14.52114 -14.35141 -13.96711 -13.65986 -13.51156 -12.75094 -12.67566 -12.58663 -12.14780 -12.09859 -12.01999 -11.85122 -11.65828 -11.57009 -11.15484 -11.10412 -10.97507 -10.90913 -10.73791 -10.49899 -10.45888 -10.37759 -9.65271 -9.58127 -9.21528 -9.18895 -8.95139 -8.84513 -8.28410 -5.93010 -3.95303 2.60798 2.88242 3.34645 3.41770 3.45684 3.99581 4.42096 4.45795 4.51005 4.61319 4.71070 4.90079 4.91923 5.01785 5.06830 5.26254 5.27465 5.35743 5.38091 5.41599 5.43036 5.52604 5.55913 5.57997 5.64826 5.75085 5.82748 5.85031 5.88291 6.00030 6.04944 6.16941 6.17934 6.34148 6.58016 6.68422 6.87994 7.05548 7.23270 7.33842 7.47496 7.77370 7.93541 8.08979 8.50603 8.64597 9.12774 9.68221 11.18389 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039083 B = 0.002628 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.254067 B =10652.176626 C =10908.306990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.066 3.934 3 H 0.041 0.959 4 C -0.110 4.110 5 C -0.124 4.124 6 C -0.109 4.109 7 C 0.066 3.934 8 H 0.043 0.957 9 C -0.143 4.143 10 N -0.286 5.286 11 N -0.588 5.588 12 C 0.528 3.472 13 O -0.508 6.508 14 C -0.135 4.135 15 C -0.102 4.102 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.519 4.519 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.890 3.110 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.376 0.624 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.094 8.843 -20.213 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.043 4.043 3 H 0.059 0.941 4 C -0.148 4.148 5 C -0.161 4.161 6 C -0.148 4.148 7 C -0.042 4.042 8 H 0.061 0.939 9 C -0.201 4.201 10 N -0.104 5.104 11 N -0.334 5.334 12 C 0.316 3.684 13 O -0.379 6.379 14 C -0.176 4.176 15 C -0.140 4.140 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.557 4.557 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.214 0.786 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 17.536 7.402 -20.431 27.924 hybrid contribution 0.101 1.717 0.986 1.983 sum 17.638 9.119 -19.445 27.791 Atomic orbital electron populations 1.21784 0.93422 1.03534 1.01275 1.22131 0.96553 0.95439 0.90133 0.94123 1.21627 0.95295 1.01988 0.95926 1.21631 0.95861 1.00650 0.97999 1.21624 0.99840 1.00597 0.92729 1.22104 0.86691 0.98414 0.96969 0.93933 1.21791 1.00362 1.01944 0.95979 1.62945 1.05791 1.48351 0.93314 1.45506 1.47492 1.17440 1.22946 1.20981 0.77249 0.85140 0.85056 1.90688 1.55584 1.20822 1.70802 1.21784 1.01262 1.01562 0.92988 1.21445 0.97581 0.97406 0.97562 1.21646 0.99375 0.99864 0.93871 1.19099 0.93656 0.93997 0.95015 1.21326 1.25382 1.03747 1.05278 0.92730 1.25047 0.96588 0.94959 0.98025 1.69983 1.33059 1.11987 1.38431 0.86563 0.78617 0.79025 0.83944 1.19801 1.21069 1.21061 0.92805 0.92266 0.90982 0.91137 0.90500 0.92290 0.91364 0.91067 0.90506 0.91427 0.92127 0.92430 0.78645 0.89318 0.89195 0.91747 0.91719 0.93509 0.93521 0.96578 0.96563 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.74 37.16 0.32 -1.16 16 2 C 0.07 0.61 2.63 -67.72 -0.18 0.43 16 3 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 4 C -0.11 -0.87 5.37 -26.65 -0.14 -1.01 16 5 C -0.12 -0.83 6.00 -26.61 -0.16 -0.99 16 6 C -0.11 -0.83 5.37 -26.65 -0.14 -0.97 16 7 C 0.07 0.58 2.63 -67.72 -0.18 0.41 16 8 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 9 C -0.14 -1.33 9.11 37.16 0.34 -0.99 16 10 N -0.29 -3.09 4.09 -99.77 -0.41 -3.50 16 11 N -0.59 -6.35 2.72 31.22 0.09 -6.26 16 12 C 0.53 7.47 7.44 -10.98 -0.08 7.39 16 13 O -0.51 -9.47 16.31 5.56 0.09 -9.38 16 14 C -0.13 -1.78 5.70 -27.88 -0.16 -1.94 16 15 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 16 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 17 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 18 C -0.52 -15.05 9.11 -34.43 -0.31 -15.37 16 19 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 22 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 H 0.05 0.59 7.51 -51.93 -0.39 0.20 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.56 7.46 -51.93 -0.39 0.17 16 38 H 0.38 3.05 8.83 -185.16 -1.64 1.42 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -33.63 372.07 -10.50 -44.13 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -10.40 Total: -3.96 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -1.19 Total: -16.67 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.41 Total: -36.73 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.63 -10.50 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907988168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.357 kcal (2) G-P(sol) polarization free energy of solvation -33.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds