Wall clock time and date at job start Tue Mar 31 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.45171 * 2 1 4 4 C 1.53043 * 109.46430 * 240.02904 * 2 1 3 5 5 C 1.53112 * 109.27977 * 180.80038 * 4 2 1 6 6 C 1.53120 * 109.15862 * 57.65901 * 5 4 2 7 7 C 1.53035 * 109.27748 * 302.34141 * 6 5 4 8 8 H 1.09001 * 109.46828 * 179.19832 * 7 6 5 9 9 C 1.53000 * 109.45467 * 299.17009 * 7 6 5 10 10 N 1.46839 * 109.46367 * 119.97823 * 2 1 3 11 11 N 1.36601 * 110.99977 * 305.85442 * 10 2 1 12 12 C 1.34776 * 120.00547 * 125.35808 * 11 10 2 13 13 O 1.21282 * 119.99204 * 4.81358 * 12 11 10 14 14 C 1.50697 * 120.00561 * 184.81479 * 12 11 10 15 15 C 1.52997 * 109.47111 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47122 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47122 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.46767 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00209 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00025 * 179.97438 * 18 17 16 21 21 N 1.31508 * 120.00475 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99749 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47080 * 89.99789 * 22 20 18 24 24 H 1.48500 * 109.47065 * 210.00024 * 22 20 18 25 25 H 1.48506 * 109.46957 * 330.00149 * 22 20 18 26 26 H 1.09005 * 109.47024 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47523 * 299.97086 * 1 2 3 28 28 H 1.09005 * 109.47599 * 59.97423 * 1 2 3 29 29 H 1.09006 * 109.50135 * 60.86111 * 4 2 1 30 30 H 1.08999 * 109.50232 * 300.74709 * 4 2 1 31 31 H 1.09000 * 109.52237 * 177.55825 * 5 4 2 32 32 H 1.08998 * 109.52774 * 297.75325 * 5 4 2 33 33 H 1.08995 * 109.50712 * 62.28055 * 6 5 4 34 34 H 1.09006 * 109.50378 * 182.40604 * 6 5 4 35 35 H 1.09002 * 109.47394 * 183.94276 * 9 7 6 36 36 H 1.09002 * 109.47498 * 303.94541 * 9 7 6 37 37 H 1.09001 * 109.47342 * 63.94487 * 9 7 6 38 38 H 0.97010 * 119.99873 * 305.35395 * 11 10 2 39 39 H 1.09000 * 109.46916 * 299.99554 * 14 12 11 40 40 H 1.08993 * 109.47058 * 59.99571 * 14 12 11 41 41 H 1.09000 * 109.46846 * 299.99571 * 15 14 12 42 42 H 1.09000 * 109.47176 * 59.99815 * 15 14 12 43 43 H 1.09006 * 109.46954 * 299.99901 * 16 15 14 44 44 H 1.08998 * 109.47267 * 59.99038 * 16 15 14 45 45 H 1.09000 * 109.46846 * 299.99482 * 17 16 15 46 46 H 1.08993 * 109.47532 * 59.99745 * 17 16 15 47 47 H 0.96995 * 120.00350 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5709 -0.7359 -1.2357 6 6 4.0547 -1.4187 0.0466 7 6 3.4865 -0.6777 1.2590 8 1 3.8175 -1.1699 2.1735 9 6 3.9832 0.7694 1.2505 10 7 2.0192 -0.6918 1.1993 11 7 1.4781 -0.1514 2.3311 12 6 0.8274 -0.9396 3.2097 13 8 0.7974 -2.1402 3.0405 14 6 0.1373 -0.3292 4.4023 15 6 -0.5184 -1.4342 5.2329 16 6 -1.2195 -0.8144 6.4433 17 6 -1.8747 -1.9195 7.2742 18 6 -2.5648 -1.3090 8.4668 19 1 -2.5383 -0.2399 8.6172 20 6 -3.2299 -2.1154 9.3659 21 7 -3.8317 -1.5828 10.4069 22 14 -3.2751 -3.9648 9.1061 23 1 -2.1119 -4.5887 9.7864 24 1 -4.5331 -4.5137 9.6729 25 1 -3.2160 -4.2620 7.6523 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5134 0.8902 28 1 -0.3634 0.5142 -0.8898 29 1 1.6894 -0.1981 -2.1400 30 1 1.6659 -1.7446 -1.2577 31 1 3.9379 -1.2861 -2.1021 32 1 3.9456 0.2872 -1.2672 33 1 3.7125 -2.4535 0.0593 34 1 5.1439 -1.3946 0.0830 35 1 3.6362 1.2780 2.1500 36 1 5.0728 0.7795 1.2249 37 1 3.5943 1.2819 0.3705 38 1 1.5621 0.7997 2.5026 39 1 0.8685 0.1992 5.0140 40 1 -0.6254 0.3710 4.0616 41 1 -1.2495 -1.9630 4.6214 42 1 0.2447 -2.1341 5.5735 43 1 -0.4887 -0.2852 7.0549 44 1 -1.9826 -0.1147 6.1023 45 1 -2.6054 -2.4490 6.6629 46 1 -1.1113 -2.6187 7.6152 47 1 -4.2993 -2.1502 11.0395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907988169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:24 Heat of formation + Delta-G solvation = -56.343342 kcal Electronic energy + Delta-G solvation = -22697.682392 eV Core-core repulsion = 19493.405046 eV Total energy + Delta-G solvation = -3204.277346 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61766 -39.74153 -36.68166 -35.84895 -34.58416 -34.20676 -32.33564 -31.24101 -29.08458 -27.52542 -27.31905 -24.38719 -23.39447 -22.67626 -21.71786 -21.21257 -20.11219 -18.84488 -18.29667 -17.71702 -17.08058 -16.51349 -16.33299 -15.95846 -15.44293 -15.35898 -14.88132 -14.74434 -14.47559 -14.45036 -13.80448 -13.70288 -13.66112 -13.46110 -13.42002 -13.05624 -12.85807 -12.72762 -12.57759 -12.32284 -12.05885 -11.91298 -11.74890 -11.56604 -11.52224 -11.48574 -11.33441 -11.32861 -11.24780 -10.75415 -10.70623 -10.18076 -9.56410 -8.29182 -6.32009 1.35262 1.36707 1.49770 1.72105 1.77309 2.36488 3.06337 3.28723 3.74436 3.81168 3.86041 3.96559 4.04939 4.07162 4.16801 4.20038 4.34610 4.42385 4.50285 4.56556 4.63794 4.66403 4.69826 4.77984 4.81151 4.86823 4.91815 4.96834 5.00069 5.09849 5.13962 5.16036 5.20145 5.21806 5.26495 5.30015 5.30614 5.50626 5.61722 5.67223 5.69526 5.96494 6.30290 6.36168 6.53811 6.76007 7.32848 7.65376 8.87417 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035789 B = 0.002716 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.170411 B =10305.555959 C =10335.967989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 H 0.068 0.932 4 C -0.108 4.108 5 C -0.119 4.119 6 C -0.108 4.108 7 C 0.061 3.939 8 H 0.064 0.936 9 C -0.181 4.181 10 N -0.311 5.311 11 N -0.571 5.571 12 C 0.530 3.470 13 O -0.566 6.566 14 C -0.125 4.125 15 C -0.096 4.096 16 C -0.093 4.093 17 C -0.017 4.017 18 C -0.529 4.529 19 H 0.038 0.962 20 C 0.004 3.996 21 N -0.951 5.951 22 Si 0.947 3.053 23 H -0.267 1.267 24 H -0.282 1.282 25 H -0.253 1.253 26 H 0.039 0.961 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.394 0.606 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.013 0.987 46 H 0.012 0.988 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.953 7.392 -27.708 33.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.045 4.045 3 H 0.086 0.914 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.147 4.147 7 C -0.047 4.047 8 H 0.082 0.918 9 C -0.240 4.240 10 N -0.129 5.129 11 N -0.317 5.317 12 C 0.318 3.682 13 O -0.442 6.442 14 C -0.166 4.166 15 C -0.134 4.134 16 C -0.131 4.131 17 C -0.055 4.055 18 C -0.567 4.567 19 H 0.056 0.944 20 C -0.193 4.193 21 N -0.592 5.592 22 Si 0.770 3.230 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.176 1.176 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.235 0.765 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.032 0.968 46 H 0.031 0.969 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.648 6.024 -27.695 33.388 hybrid contribution -0.068 0.311 0.712 0.779 sum 17.581 6.335 -26.984 32.823 Atomic orbital electron populations 1.21801 0.94178 1.01564 1.02469 1.22202 0.95778 0.97064 0.89458 0.91378 1.21632 0.96216 1.00809 0.96015 1.21631 0.94901 1.01676 0.97418 1.21590 1.00701 0.99069 0.93351 1.22229 0.85993 0.96801 0.99669 0.91792 1.22426 1.03149 0.96011 1.02408 1.63081 1.06682 1.49542 0.93580 1.45210 1.56813 1.10384 1.19247 1.21124 0.77237 0.86597 0.83255 1.90670 1.60762 1.16977 1.75834 1.21647 1.01557 0.99686 0.93736 1.21265 0.99140 0.97254 0.95748 1.21332 0.98809 0.97777 0.95135 1.19576 0.95403 0.96094 0.94394 1.21548 1.32604 0.94465 1.08132 0.94407 1.25984 0.94620 1.04076 0.94594 1.70053 1.36875 1.37674 1.14578 0.85705 0.77901 0.79650 0.79697 1.19232 1.20732 1.17641 0.94208 0.92889 0.90081 0.89155 0.92661 0.90473 0.90440 0.92851 0.89592 0.92571 0.90500 0.90772 0.76531 0.86525 0.86529 0.93086 0.92988 0.92362 0.92386 0.96844 0.96945 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.11 71.98 0.66 -1.68 16 2 C 0.06 0.91 2.33 44.94 0.10 1.02 16 3 H 0.07 0.76 6.11 -2.39 -0.01 0.75 16 4 C -0.11 -1.36 5.37 30.65 0.16 -1.19 16 5 C -0.12 -1.20 5.70 30.67 0.17 -1.03 16 6 C -0.11 -1.49 5.61 30.65 0.17 -1.32 16 7 C 0.06 1.00 3.15 44.94 0.14 1.14 16 8 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 9 C -0.18 -1.91 8.23 71.98 0.59 -1.32 16 10 N -0.31 -6.14 4.20 -469.59 -1.97 -8.11 16 11 N -0.57 -11.04 3.34 -173.54 -0.58 -11.62 16 12 C 0.53 14.09 7.93 87.66 0.70 14.78 16 13 O -0.57 -21.04 16.31 -3.04 -0.05 -21.09 16 14 C -0.13 -2.91 5.70 29.85 0.17 -2.74 16 15 C -0.10 -3.15 4.50 30.59 0.14 -3.01 16 16 C -0.09 -3.58 5.15 30.59 0.16 -3.43 16 17 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16 18 C -0.53 -31.40 9.66 25.60 0.25 -31.15 16 19 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 20 C 0.00 0.23 5.47 84.66 0.46 0.70 16 21 N -0.95 -60.90 13.96 21.45 0.30 -60.60 16 22 Si 0.95 46.41 27.47 68.60 1.88 48.30 16 23 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 25 H -0.25 -11.82 6.54 99.48 0.65 -11.17 16 26 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.05 0.89 7.46 -2.39 -0.02 0.88 16 28 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.59 6.65 -2.39 -0.02 0.57 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.06 0.59 7.34 -2.39 -0.02 0.57 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 0.64 4.80 -2.39 -0.01 0.63 16 38 H 0.39 5.10 7.97 -215.48 -1.72 3.38 16 39 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 42 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 43 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 44 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 46 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 47 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -76.00 361.41 2.73 -73.27 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -0.85 Total: 9.81 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: 4.00 Total: -29.95 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -2.25 Total: -80.33 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.05 Total: -21.09 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.88 Total: 48.30 kcal Total: -76.00 2.73 -73.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907988169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.931 kcal (2) G-P(sol) polarization free energy of solvation -76.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds