Wall clock time and date at job start Tue Mar 31 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.45178 * 2 1 4 4 C 1.53039 * 109.46343 * 119.96921 * 2 1 3 5 5 C 1.53123 * 109.27546 * 60.83919 * 4 2 1 6 6 C 1.53120 * 109.21163 * 57.62218 * 5 4 2 7 7 C 1.53048 * 109.27450 * 302.43753 * 6 5 4 8 8 H 1.08992 * 109.40242 * 299.07394 * 7 6 5 9 9 C 1.53005 * 109.45968 * 179.13390 * 7 6 5 10 10 N 1.46842 * 109.46346 * 240.02759 * 2 1 3 11 11 N 1.36598 * 111.00526 * 65.82156 * 10 2 1 12 12 C 1.34780 * 119.99999 * 119.99872 * 11 10 2 13 13 O 1.21277 * 119.99742 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99863 * 180.02562 * 12 11 10 15 15 C 1.53001 * 109.47263 * 180.02562 * 14 12 11 16 16 C 1.52993 * 109.47062 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47062 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47263 * 180.02562 * 17 16 15 19 19 H 1.07989 * 119.99937 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99839 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00037 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 120.00253 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46720 * 89.99903 * 22 20 18 24 24 H 1.48495 * 109.47026 * 210.00051 * 22 20 18 25 25 H 1.48496 * 109.47047 * 330.00096 * 22 20 18 26 26 H 1.09000 * 109.47024 * 300.03036 * 1 2 3 27 27 H 1.09003 * 109.46943 * 60.02960 * 1 2 3 28 28 H 1.08999 * 109.46928 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.50420 * 300.90115 * 4 2 1 30 30 H 1.09001 * 109.50541 * 180.77469 * 4 2 1 31 31 H 1.09002 * 109.52319 * 177.56011 * 5 4 2 32 32 H 1.08995 * 109.52318 * 297.68693 * 5 4 2 33 33 H 1.09000 * 109.50719 * 62.32149 * 6 5 4 34 34 H 1.09003 * 109.50116 * 182.43702 * 6 5 4 35 35 H 1.08999 * 109.46733 * 299.88351 * 9 7 6 36 36 H 1.08996 * 109.46989 * 59.88602 * 9 7 6 37 37 H 1.09001 * 109.46799 * 179.88997 * 9 7 6 38 38 H 0.97001 * 119.99858 * 300.00435 * 11 10 2 39 39 H 1.08999 * 109.46676 * 300.00158 * 14 12 11 40 40 H 1.09000 * 109.47091 * 59.99604 * 14 12 11 41 41 H 1.08999 * 109.46673 * 300.00051 * 15 14 12 42 42 H 1.09000 * 109.46818 * 59.99368 * 15 14 12 43 43 H 1.08999 * 109.47587 * 299.99697 * 16 15 14 44 44 H 1.08996 * 109.47174 * 60.00153 * 16 15 14 45 45 H 1.09011 * 109.46961 * 300.00056 * 17 16 15 46 46 H 1.09004 * 109.47293 * 59.99467 * 17 16 15 47 47 H 0.96999 * 120.00494 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 1.5443 -2.1695 1.2357 6 6 2.0257 -2.8540 -0.0466 7 6 1.5174 -2.0704 -1.2590 8 1 0.4275 -2.0608 -1.2530 9 6 2.0141 -2.7387 -2.5427 10 7 2.0193 -0.6917 -1.1993 11 7 1.6900 -0.0015 -2.3312 12 6 2.6593 0.4435 -3.1552 13 8 3.8239 0.2307 -2.8919 14 6 2.2960 1.2054 -4.4036 15 6 3.5717 1.5916 -5.1548 16 6 3.2028 2.3646 -6.4225 17 6 4.4785 2.7502 -7.1741 18 6 4.1151 3.5121 -8.4225 19 1 3.0782 3.7019 -8.6567 20 6 5.1067 3.9669 -9.2657 21 7 4.7897 4.6314 -10.3554 22 14 6.9006 3.6392 -8.8602 23 1 7.3181 2.3506 -9.4689 24 1 7.7394 4.7378 -9.4030 25 1 7.0701 3.5686 -7.3867 26 1 -0.3633 0.5143 0.8897 27 1 -0.3633 0.5134 -0.8903 28 1 -0.3633 -1.0277 0.0005 29 1 1.6637 -0.2163 2.1400 30 1 3.1298 -0.7092 1.2577 31 1 1.9409 -2.6988 2.1021 32 1 0.4549 -2.1822 1.2684 33 1 3.1153 -2.8769 -0.0600 34 1 1.6393 -3.8727 -0.0824 35 1 3.1040 -2.7481 -2.5490 36 1 1.6416 -3.7621 -2.5871 37 1 1.6505 -2.1818 -3.4063 38 1 0.7585 0.1684 -2.5419 39 1 1.6736 0.5794 -5.0430 40 1 1.7467 2.1069 -4.1321 41 1 4.1944 2.2174 -4.5155 42 1 4.1206 0.6898 -5.4262 43 1 2.5803 1.7385 -7.0617 44 1 2.6537 3.2663 -6.1515 45 1 5.1014 3.3763 -6.5351 46 1 5.0272 1.8483 -7.4452 47 1 5.4872 4.9510 -10.9489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907988171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:27 Heat of formation + Delta-G solvation = -34.905038 kcal Electronic energy + Delta-G solvation = -22713.016939 eV Core-core repulsion = 19509.669228 eV Total energy + Delta-G solvation = -3203.347711 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.83255 -38.75065 -35.26671 -34.78754 -33.57786 -32.56427 -31.16907 -29.93881 -28.20913 -26.94014 -25.74262 -23.40416 -22.28203 -21.72149 -20.21954 -19.99327 -19.42350 -17.52033 -16.82610 -16.49494 -16.19551 -15.50473 -15.27347 -14.61697 -14.39431 -14.12768 -13.86209 -13.74756 -13.66292 -13.05956 -12.85510 -12.61640 -12.40158 -12.33050 -12.10380 -12.07042 -11.97962 -11.71556 -11.28445 -11.08373 -11.00670 -10.86769 -10.72476 -10.70326 -10.50391 -9.88102 -9.74627 -9.61630 -9.38667 -9.24128 -9.09382 -8.90036 -8.47036 -5.98364 -3.95723 2.56536 2.80915 3.37630 3.44528 3.51037 3.99589 4.38770 4.43300 4.47552 4.52459 4.64614 4.76239 4.88115 4.95745 4.99826 5.07061 5.09699 5.25639 5.29950 5.32400 5.36958 5.44031 5.47984 5.52127 5.58441 5.64910 5.70947 5.79245 5.80186 5.83534 6.00379 6.06220 6.09374 6.18373 6.44110 6.62447 6.71823 6.85497 7.02156 7.27006 7.40550 7.41476 7.54081 7.87337 8.57750 8.60699 9.06706 9.65169 11.15151 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036224 B = 0.002732 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.784847 B =10245.115852 C =10379.620955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.064 3.936 3 H 0.089 0.911 4 C -0.109 4.109 5 C -0.125 4.125 6 C -0.109 4.109 7 C 0.061 3.939 8 H 0.048 0.952 9 C -0.143 4.143 10 N -0.283 5.283 11 N -0.588 5.588 12 C 0.528 3.472 13 O -0.510 6.510 14 C -0.135 4.135 15 C -0.105 4.105 16 C -0.102 4.102 17 C -0.016 4.016 18 C -0.519 4.519 19 H 0.071 0.929 20 C 0.064 3.936 21 N -0.907 5.907 22 Si 0.879 3.121 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.264 1.264 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.377 0.623 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.016 0.984 46 H 0.011 0.989 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.672 -14.796 24.891 31.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.045 4.045 3 H 0.107 0.893 4 C -0.148 4.148 5 C -0.162 4.162 6 C -0.148 4.148 7 C -0.047 4.047 8 H 0.066 0.934 9 C -0.201 4.201 10 N -0.100 5.100 11 N -0.334 5.334 12 C 0.315 3.685 13 O -0.382 6.382 14 C -0.176 4.176 15 C -0.143 4.143 16 C -0.140 4.140 17 C -0.053 4.053 18 C -0.557 4.557 19 H 0.089 0.911 20 C -0.136 4.136 21 N -0.546 5.546 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.188 1.188 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.215 0.785 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.034 0.966 46 H 0.030 0.970 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.207 -14.860 24.911 30.750 hybrid contribution -0.576 -0.003 0.025 0.577 sum -10.783 -14.864 24.936 30.968 Atomic orbital electron populations 1.22495 0.97242 1.02494 1.02605 1.22221 0.93078 0.99080 0.90096 0.89314 1.21580 1.02035 0.95288 0.95856 1.21654 1.00708 0.95900 0.97958 1.21615 1.02308 0.98082 0.92759 1.22146 0.97410 0.88309 0.96822 0.93406 1.21791 1.02792 0.99501 0.96015 1.63067 1.55209 0.98499 0.93226 1.45545 1.08776 1.57822 1.21307 1.21000 0.85238 0.78487 0.83781 1.90685 1.18716 1.55251 1.73539 1.21762 1.01830 1.00360 0.93641 1.21477 0.94741 1.01081 0.96998 1.21473 0.99860 0.98474 0.94187 1.19579 0.93716 0.96169 0.95829 1.21187 0.95169 1.34298 1.05026 0.91130 1.25044 0.99127 0.94671 0.94789 1.69921 1.33245 1.38401 1.13043 0.86773 0.85253 0.77890 0.79393 1.20316 1.21490 1.18847 0.91437 0.92684 0.91691 0.91055 0.90611 0.91486 0.91949 0.90600 0.91136 0.91381 0.92209 0.92604 0.78489 0.89078 0.89039 0.91706 0.91723 0.92891 0.92857 0.96601 0.97038 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.20 8.29 37.16 0.31 -0.89 16 2 C 0.06 0.53 3.15 -67.73 -0.21 0.32 16 3 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.11 -0.78 5.61 -26.65 -0.15 -0.93 16 5 C -0.12 -0.78 5.69 -26.61 -0.15 -0.93 16 6 C -0.11 -0.81 5.38 -26.64 -0.14 -0.95 16 7 C 0.06 0.53 2.33 -67.71 -0.16 0.37 16 8 H 0.05 0.37 6.19 -51.93 -0.32 0.05 16 9 C -0.14 -1.38 8.99 37.16 0.33 -1.04 16 10 N -0.28 -2.93 4.20 -99.77 -0.42 -3.35 16 11 N -0.59 -6.13 3.57 31.22 0.11 -6.02 16 12 C 0.53 7.23 7.63 -10.98 -0.08 7.15 16 13 O -0.51 -9.29 16.31 5.56 0.09 -9.20 16 14 C -0.13 -1.70 5.70 -27.88 -0.16 -1.86 16 15 C -0.10 -1.77 4.50 -26.73 -0.12 -1.89 16 16 C -0.10 -2.02 5.15 -26.73 -0.14 -2.16 16 17 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 18 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 19 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 20 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.91 -28.56 13.96 55.43 0.77 -27.79 16 22 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.26 -6.56 6.54 56.52 0.37 -6.20 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.34 6.97 -51.93 -0.36 -0.02 16 28 H 0.06 0.39 4.80 -51.93 -0.25 0.15 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.57 7.33 -51.93 -0.38 0.19 16 38 H 0.38 2.95 7.51 -185.16 -1.39 1.56 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 42 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.39 7.20 -51.92 -0.37 0.02 16 46 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 47 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -34.10 360.34 -9.63 -43.73 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -9.74 Total: -3.66 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -1.22 Total: -16.98 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.47 Total: -37.17 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.10 -9.63 -43.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907988171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.830 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds