Wall clock time and date at job start Tue Mar 31 2020 06:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.32541 * 2 1 4 4 C 1.54912 * 110.37023 * 237.75662 * 2 1 3 5 5 C 1.55160 * 101.57958 * 204.15444 * 4 2 1 6 6 C 1.54320 * 103.10280 * 35.41503 * 5 4 2 7 7 C 1.53003 * 109.88177 * 97.31035 * 6 5 4 8 8 C 1.52994 * 109.87981 * 218.47412 * 6 5 4 9 9 N 1.47319 * 107.12368 * 338.02211 * 6 5 4 10 10 C 1.34774 * 125.61775 * 178.81665 * 9 6 5 11 11 O 1.21587 * 119.99859 * 184.33371 * 10 9 6 12 12 N 1.34779 * 119.99705 * 4.33636 * 10 9 6 13 13 C 1.46500 * 119.99258 * 184.90686 * 12 10 9 14 14 C 1.53004 * 109.46399 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47036 * 299.99608 * 14 13 12 16 16 C 1.52994 * 109.47556 * 60.00305 * 14 13 12 17 17 C 1.50708 * 109.46823 * 180.02562 * 14 13 12 18 18 H 1.08001 * 119.99794 * 359.97438 * 17 14 13 19 19 C 1.37876 * 119.99765 * 179.97438 * 17 14 13 20 20 N 1.31517 * 120.00236 * 359.97438 * 19 17 14 21 21 Si 1.86804 * 119.99842 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.46994 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47088 * 119.99835 * 21 19 17 24 24 H 1.48503 * 109.46947 * 240.00231 * 21 19 17 25 25 H 1.08995 * 109.47285 * 189.30018 * 1 2 3 26 26 H 1.08996 * 109.47909 * 309.30901 * 1 2 3 27 27 H 1.09005 * 109.47028 * 69.30900 * 1 2 3 28 28 H 1.08998 * 110.99925 * 86.08460 * 4 2 1 29 29 H 1.08991 * 111.00335 * 322.23246 * 4 2 1 30 30 H 1.09005 * 110.71404 * 153.86615 * 5 4 2 31 31 H 1.08996 * 110.71900 * 276.96102 * 5 4 2 32 32 H 1.09009 * 109.47044 * 55.79968 * 7 6 5 33 33 H 1.09001 * 109.47374 * 175.79851 * 7 6 5 34 34 H 1.08999 * 109.47329 * 295.80222 * 7 6 5 35 35 H 1.09001 * 109.47332 * 58.55443 * 8 6 5 36 36 H 1.09010 * 109.47056 * 178.54670 * 8 6 5 37 37 H 1.08998 * 109.47420 * 298.54713 * 8 6 5 38 38 H 0.96996 * 119.99858 * 4.91040 * 12 10 9 39 39 H 1.08997 * 109.47533 * 299.99529 * 13 12 10 40 40 H 1.09000 * 109.47275 * 60.00714 * 13 12 10 41 41 H 1.08997 * 109.47220 * 60.00590 * 15 14 13 42 42 H 1.09006 * 109.47094 * 180.02562 * 15 14 13 43 43 H 1.09000 * 109.47800 * 300.00232 * 15 14 13 44 44 H 1.09001 * 109.47586 * 59.99491 * 16 14 13 45 45 H 1.09001 * 109.47238 * 179.97438 * 16 14 13 46 46 H 1.09004 * 109.46775 * 299.99862 * 16 14 13 47 47 H 0.96999 * 120.00050 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0692 -0.7748 -1.2283 5 6 3.4778 -1.1991 -0.7351 6 6 3.2539 -1.4764 0.7664 7 6 3.0491 -2.9755 0.9938 8 6 4.4584 -0.9848 1.5715 9 7 2.0430 -0.7395 1.1677 10 6 1.4962 -0.7397 2.3996 11 8 0.4483 -0.1564 2.5997 12 7 2.1111 -1.3864 3.4096 13 6 1.4652 -1.4782 4.7213 14 6 2.3677 -2.2567 5.6807 15 6 2.6046 -3.6640 5.1293 16 6 3.7077 -1.5319 5.8218 17 6 1.7030 -2.3517 7.0300 18 1 0.7340 -1.9014 7.1875 19 6 2.3320 -3.0133 8.0632 20 7 3.5117 -3.5620 7.8713 21 14 1.5084 -3.1305 9.7358 22 1 0.1966 -2.4358 9.6914 23 1 1.3013 -4.5584 10.0866 24 1 2.3729 -2.4896 10.7592 25 1 -0.3633 -1.0141 0.1661 26 1 -0.3635 0.6510 0.7951 27 1 -0.3633 0.3631 -0.9614 28 1 2.1400 -0.1244 -2.1001 29 1 1.4511 -1.6466 -1.4424 30 1 3.8105 -2.1013 -1.2485 31 1 4.1952 -0.3905 -0.8752 32 1 3.8992 -3.5240 0.5879 33 1 2.9661 -3.1729 2.0626 34 1 2.1362 -3.2976 0.4929 35 1 4.6002 0.0821 1.3985 36 1 4.2822 -1.1603 2.6329 37 1 5.3509 -1.5257 1.2571 38 1 2.9812 -1.7910 3.2680 39 1 1.2968 -0.4756 5.1144 40 1 0.5104 -1.9943 4.6209 41 1 3.0851 -3.5957 4.1533 42 1 3.2472 -4.2188 5.8130 43 1 1.6499 -4.1804 5.0289 44 1 3.5390 -0.5292 6.2146 45 1 4.3505 -2.0863 6.5056 46 1 4.1882 -1.4635 4.8457 47 1 3.9540 -4.0278 8.5981 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922838452.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:31 Heat of formation + Delta-G solvation = -34.509736 kcal Electronic energy + Delta-G solvation = -24417.811841 eV Core-core repulsion = 21214.481271 eV Total energy + Delta-G solvation = -3203.330570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58165 -37.88104 -36.31247 -34.12535 -32.59944 -31.57562 -30.36035 -28.59812 -27.39621 -25.69722 -25.60483 -24.82405 -23.69392 -21.96874 -20.55434 -19.34548 -18.67948 -16.79930 -16.34465 -15.73983 -15.01267 -14.79341 -14.64603 -14.16605 -13.90469 -13.77094 -13.47502 -13.17672 -12.94699 -12.82090 -12.55155 -12.41182 -12.26587 -12.06786 -11.69795 -11.50253 -11.30318 -11.27870 -11.15031 -10.87547 -10.82561 -10.72081 -10.63111 -10.59536 -10.35625 -10.15792 -9.60417 -9.44784 -9.24043 -8.75244 -8.56731 -8.37299 -8.01920 -5.99784 -4.09332 3.00337 3.28913 3.37443 3.42760 3.70684 4.22248 4.41310 4.43637 4.70530 4.77062 4.98884 5.07026 5.19012 5.27013 5.42362 5.50959 5.55535 5.56367 5.64551 5.69311 5.76397 5.82602 5.91703 5.94997 6.12465 6.24361 6.25332 6.27595 6.41705 6.44021 6.57478 6.68762 6.85772 6.86450 7.00499 7.06251 7.19267 7.40237 7.56442 7.58260 7.72526 8.03462 8.15368 8.41610 8.55809 8.90948 9.17295 9.56316 11.01734 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029719 B = 0.004509 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.946624 B = 6208.491695 C = 6730.216704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.153 3.847 3 H 0.067 0.933 4 C -0.130 4.130 5 C -0.120 4.120 6 C 0.152 3.848 7 C -0.164 4.164 8 C -0.166 4.166 9 N -0.632 5.632 10 C 0.718 3.282 11 O -0.595 6.595 12 N -0.735 5.735 13 C 0.148 3.852 14 C 0.056 3.944 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.503 4.503 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.395 0.605 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.004 0.996 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.027 0.973 45 H 0.085 0.915 46 H 0.003 0.997 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.834 2.835 -17.687 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.050 3.950 3 H 0.085 0.915 4 C -0.168 4.168 5 C -0.158 4.158 6 C 0.067 3.933 7 C -0.223 4.223 8 C -0.225 4.225 9 N -0.372 5.372 10 C 0.420 3.580 11 O -0.474 6.474 12 N -0.394 5.394 13 C 0.025 3.975 14 C 0.055 3.945 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.541 4.541 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.235 0.765 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.023 0.977 42 H 0.104 0.896 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.104 0.896 46 H 0.022 0.978 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.143 3.137 -17.298 17.710 hybrid contribution 0.079 -0.330 0.909 0.970 sum 2.222 2.807 -16.389 16.775 Atomic orbital electron populations 1.22043 0.93949 1.03294 1.01684 1.21622 0.95057 0.94675 0.83687 0.91530 1.22863 0.96208 1.00625 0.97104 1.22670 0.97485 1.02235 0.93428 1.21037 0.85474 0.92111 0.94680 1.22329 1.02243 0.94337 1.03347 1.22383 0.97378 1.01846 1.00858 1.47931 1.28871 1.51766 1.08592 1.15610 0.83181 0.79965 0.79213 1.90840 1.23807 1.50178 1.82558 1.45967 1.23292 1.58802 1.11337 1.21578 0.96115 1.00110 0.79741 1.18364 0.92049 0.91311 0.92789 1.21836 1.00059 0.99757 0.97045 1.21827 0.99565 0.99347 0.97948 1.21028 1.04165 1.34673 0.94258 0.92354 1.24878 0.94858 0.95149 0.98648 1.69816 1.14323 1.36430 1.31965 0.86521 0.79665 0.77671 0.84065 1.19751 1.21096 1.21094 0.92618 0.90195 0.92899 0.90160 0.90604 0.90109 0.90534 0.91441 0.91401 0.92037 0.91932 0.91608 0.91167 0.76521 0.92977 0.93152 0.97741 0.89602 0.95441 0.95408 0.89617 0.97778 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.25 37.16 0.31 -1.71 16 2 C 0.15 1.91 3.79 -66.41 -0.25 1.66 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -1.17 6.51 -24.58 -0.16 -1.33 16 5 C -0.12 -1.05 6.01 -24.90 -0.15 -1.20 16 6 C 0.15 1.81 0.80 -130.68 -0.10 1.70 16 7 C -0.16 -1.98 8.29 37.16 0.31 -1.67 16 8 C -0.17 -1.96 8.37 37.15 0.31 -1.65 16 9 N -0.63 -9.43 2.75 -153.83 -0.42 -9.85 16 10 C 0.72 13.78 7.87 -86.92 -0.68 13.09 16 11 O -0.59 -13.27 14.13 5.29 0.07 -13.20 16 12 N -0.74 -14.20 4.15 -65.22 -0.27 -14.47 16 13 C 0.15 3.30 4.51 -4.04 -0.02 3.28 16 14 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 15 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 16 C -0.13 -2.98 8.08 37.15 0.30 -2.68 16 17 C -0.50 -13.34 8.01 -34.44 -0.28 -13.62 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.73 9.35 55.43 0.52 -23.21 16 21 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 1.29 6.57 -51.93 -0.34 0.95 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 30 H 0.08 0.59 7.80 -51.93 -0.40 0.18 16 31 H 0.08 0.60 7.84 -51.93 -0.41 0.19 16 32 H 0.07 0.65 8.10 -51.92 -0.42 0.23 16 33 H 0.07 0.98 5.12 -51.93 -0.27 0.71 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.93 4.88 -51.92 -0.25 0.68 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.39 7.05 1.35 -40.82 -0.06 7.00 16 39 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.00 0.08 5.94 -51.93 -0.31 -0.23 16 42 H 0.09 2.16 6.07 -51.93 -0.31 1.84 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 46 H 0.00 0.07 6.35 -51.93 -0.33 -0.26 16 47 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -29.03 345.19 -8.23 -37.26 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -8.03 Total: 6.30 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -0.29 Total: -3.90 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.17 Total: -47.53 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.07 Total: -13.20 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.03 -8.23 -37.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922838452.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.752 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds