Wall clock time and date at job start Tue Mar 31 2020 06:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 109.52977 * 2 1 4 4 C 1.53194 * 109.49625 * 239.91503 * 2 1 3 5 5 N 1.46918 * 108.78089 * 185.41610 * 4 2 1 6 6 C 1.34772 * 120.63533 * 233.59191 * 5 4 2 7 7 O 1.21280 * 119.99896 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00383 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.47283 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46933 * 59.99747 * 9 8 6 11 11 C 1.52998 * 109.47064 * 180.02562 * 9 8 6 12 12 C 1.53001 * 109.46872 * 300.00077 * 9 8 6 13 13 C 1.46929 * 118.73922 * 53.60697 * 5 4 2 14 14 C 1.53196 * 108.77486 * 306.39780 * 13 5 4 15 15 C 1.53037 * 109.31315 * 54.63188 * 14 13 5 16 16 H 1.08996 * 109.45814 * 178.62511 * 15 14 13 17 17 N 1.46505 * 109.46151 * 58.65628 * 15 14 13 18 18 C 1.36933 * 120.00099 * 84.99818 * 17 15 14 19 19 H 1.08001 * 120.00067 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00259 * 180.02562 * 18 17 15 21 21 N 1.31627 * 119.99655 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00247 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47036 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46973 * 120.00309 * 22 20 18 25 25 H 1.48505 * 109.46986 * 239.99762 * 22 20 18 26 26 H 1.08999 * 109.46654 * 299.92265 * 1 2 3 27 27 H 1.09000 * 109.47055 * 59.91775 * 1 2 3 28 28 H 1.09001 * 109.47391 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.58991 * 305.21097 * 4 2 1 30 30 H 1.09000 * 109.58500 * 65.48428 * 4 2 1 31 31 H 1.08996 * 109.47253 * 299.99593 * 8 6 5 32 32 H 1.08999 * 109.46911 * 60.00184 * 8 6 5 33 33 H 1.09007 * 109.46805 * 60.00279 * 10 9 8 34 34 H 1.09002 * 109.46863 * 179.97438 * 10 9 8 35 35 H 1.08998 * 109.47330 * 300.00196 * 10 9 8 36 36 H 1.08999 * 109.47093 * 60.00319 * 11 9 8 37 37 H 1.09001 * 109.46779 * 179.97438 * 11 9 8 38 38 H 1.08996 * 109.47289 * 299.99593 * 11 9 8 39 39 H 1.09004 * 109.47322 * 60.00310 * 12 9 8 40 40 H 1.09001 * 109.47021 * 179.97438 * 12 9 8 41 41 H 1.08999 * 109.47531 * 299.99832 * 12 9 8 42 42 H 1.08998 * 109.59209 * 186.60595 * 13 5 4 43 43 H 1.09003 * 109.58217 * 66.17876 * 13 5 4 44 44 H 1.08998 * 109.49640 * 174.58442 * 14 13 5 45 45 H 1.08996 * 109.49713 * 294.67755 * 14 13 5 46 46 H 0.97005 * 119.99632 * 265.00173 * 17 15 14 47 47 H 0.96999 * 119.99852 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5045 -0.8294 -1.1697 6 6 4.2810 -0.3867 -2.1783 7 8 3.7731 0.1048 -3.1639 8 6 5.7805 -0.5024 -2.0816 9 6 6.4189 0.0689 -3.3493 10 6 6.0295 1.5411 -3.4975 11 6 7.9412 -0.0492 -3.2514 12 6 5.9244 -0.7145 -4.5670 13 6 4.1052 -1.4269 0.0307 14 6 3.5708 -0.6952 1.2660 15 6 2.0408 -0.7232 1.2483 16 1 1.6583 -0.2244 2.1388 17 7 1.5782 -2.1131 1.2308 18 6 1.4467 -2.8058 2.4047 19 1 1.6836 -2.3273 3.3435 20 6 1.0089 -4.1230 2.3881 21 7 0.7197 -4.7059 1.2440 22 14 0.8302 -5.0681 3.9895 23 1 1.2148 -4.1933 5.1261 24 1 -0.5808 -5.5010 4.1539 25 1 1.7139 -6.2613 3.9613 26 1 -0.3632 0.5126 0.8907 27 1 -0.3633 0.5151 -0.8892 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6051 -1.7217 -1.2981 30 1 1.7615 -0.1594 -2.1390 31 1 6.1327 0.0553 -1.2140 32 1 6.0579 -1.5513 -1.9766 33 1 6.3818 2.0992 -2.6299 34 1 6.4847 1.9482 -4.4004 35 1 4.9450 1.6248 -3.5674 36 1 8.2182 -1.0981 -3.1462 37 1 8.3960 0.3574 -4.1547 38 1 8.2939 0.5086 -2.3840 39 1 4.8398 -0.6307 -4.6370 40 1 6.3788 -0.3072 -5.4701 41 1 6.2017 -1.7633 -4.4615 42 1 5.1895 -1.3249 -0.0138 43 1 3.8373 -2.4820 0.0867 44 1 3.9334 -1.1898 2.1670 45 1 3.9160 0.3386 1.2540 46 1 1.3652 -2.5428 0.3876 47 1 0.4142 -5.6265 1.2324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035907281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:06 Heat of formation + Delta-G solvation = -42.576220 kcal Electronic energy + Delta-G solvation = -23972.981509 eV Core-core repulsion = 20769.301151 eV Total energy + Delta-G solvation = -3203.680359 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.29219 -38.25659 -36.19975 -34.25528 -32.85965 -31.38929 -29.20976 -28.73350 -27.19627 -27.12028 -25.88662 -24.61732 -23.46122 -21.64560 -20.06427 -18.69620 -17.99917 -17.37559 -16.78621 -15.56303 -15.39000 -14.68704 -14.46879 -14.32653 -14.24134 -13.99271 -13.78476 -13.37945 -13.15292 -12.69972 -12.51825 -12.21343 -12.15196 -12.05784 -11.72517 -11.62410 -11.37635 -11.30929 -11.08820 -10.99831 -10.92332 -10.77421 -10.65585 -10.62885 -10.48153 -10.35644 -10.16578 -9.82812 -9.55989 -9.16893 -8.94335 -8.14748 -6.98909 -5.80778 -3.09131 2.90278 3.34301 3.39843 3.46186 3.48120 4.55937 4.67761 4.70586 4.84322 5.12643 5.24248 5.33870 5.38340 5.47473 5.49290 5.56006 5.57828 5.60240 5.62506 5.74021 5.78025 5.82956 5.87217 5.91187 5.94157 6.07626 6.10082 6.11793 6.14248 6.23191 6.26542 6.32983 6.41310 6.50931 6.54038 6.61101 6.66316 6.69053 6.78357 6.94378 7.03927 7.67480 7.80371 8.37809 8.50222 9.49535 10.06505 10.41630 11.41703 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023929 B = 0.004323 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.862306 B = 6474.997432 C = 6931.649518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.064 0.936 4 C 0.119 3.881 5 N -0.602 5.602 6 C 0.514 3.486 7 O -0.547 6.547 8 C -0.131 4.131 9 C -0.051 4.051 10 C -0.152 4.152 11 C -0.142 4.142 12 C -0.153 4.153 13 C 0.113 3.887 14 C -0.150 4.150 15 C 0.178 3.822 16 H 0.050 0.950 17 N -0.719 5.719 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.903 3.097 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.293 1.293 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.384 0.616 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.451 10.172 -6.550 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.004 4.004 5 N -0.333 5.333 6 C 0.303 3.697 7 O -0.426 6.426 8 C -0.171 4.171 9 C -0.051 4.051 10 C -0.209 4.209 11 C -0.199 4.199 12 C -0.210 4.210 13 C -0.009 4.009 14 C -0.191 4.191 15 C 0.068 3.932 16 H 0.068 0.932 17 N -0.361 5.361 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.735 3.265 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.220 1.220 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.066 0.934 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.161 10.350 -6.876 16.052 hybrid contribution -0.034 -0.890 0.870 1.245 sum 10.128 9.460 -6.006 15.104 Atomic orbital electron populations 1.21666 0.94319 1.03147 1.00375 1.21692 0.96427 0.98788 0.95865 0.91743 1.21608 0.78920 1.01393 0.98443 1.48178 1.07073 1.59800 1.18298 1.20575 0.89356 0.77430 0.82382 1.90517 1.75623 1.45544 1.30958 1.21790 0.92385 1.03159 0.99763 1.20263 0.94272 0.96380 0.94214 1.22098 1.04356 0.94074 1.00375 1.21899 0.94849 1.01566 1.01591 1.22104 1.04181 0.98499 0.96225 1.21726 0.96394 0.98980 0.83820 1.22520 1.00495 0.98582 0.97498 1.20212 0.90789 0.87354 0.94848 0.93220 1.42486 1.78963 1.07727 1.06929 1.19267 1.37087 0.93867 0.86593 0.91218 1.24701 1.02296 0.97187 0.96580 1.69663 1.51809 1.12972 1.23608 0.86174 0.77297 0.79973 0.83058 1.20642 1.21981 1.21986 0.92881 0.93800 0.91066 0.90873 0.89865 0.89248 0.89160 0.93761 0.93412 0.89615 0.92733 0.92601 0.92804 0.89598 0.93405 0.93630 0.91223 0.89793 0.90817 0.93377 0.78089 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.05 37.16 0.34 -1.88 16 2 C -0.11 -1.76 2.67 -90.50 -0.24 -2.00 16 3 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 4 C 0.12 2.00 5.41 -3.71 -0.02 1.98 16 5 N -0.60 -9.52 2.97 -172.77 -0.51 -10.04 16 6 C 0.51 7.81 7.11 -10.99 -0.08 7.73 16 7 O -0.55 -9.43 10.76 5.56 0.06 -9.37 16 8 C -0.13 -1.56 3.12 -27.88 -0.09 -1.65 16 9 C -0.05 -0.58 0.77 -154.50 -0.12 -0.70 16 10 C -0.15 -1.80 8.18 37.16 0.30 -1.49 16 11 C -0.14 -1.31 8.47 37.16 0.31 -0.99 16 12 C -0.15 -1.87 8.17 37.16 0.30 -1.57 16 13 C 0.11 1.76 6.08 -3.71 -0.02 1.73 16 14 C -0.15 -2.42 5.78 -26.61 -0.15 -2.57 16 15 C 0.18 3.29 2.53 -67.89 -0.17 3.12 16 16 H 0.05 0.95 8.08 -51.93 -0.42 0.54 16 17 N -0.72 -16.36 3.64 -53.39 -0.19 -16.55 16 18 C -0.24 -6.13 9.93 -15.06 -0.15 -6.28 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -26.93 13.06 55.49 0.72 -26.20 16 22 Si 0.90 21.63 29.55 -169.99 -5.02 16.60 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.33 7.54 -51.93 -0.39 0.94 16 29 H 0.07 1.38 6.64 -51.92 -0.34 1.03 16 30 H 0.08 1.41 7.01 -51.93 -0.36 1.04 16 31 H 0.09 0.95 7.69 -51.93 -0.40 0.55 16 32 H 0.09 1.01 7.94 -51.93 -0.41 0.60 16 33 H 0.04 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 1.22 5.51 -51.93 -0.29 0.94 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 1.27 5.51 -51.93 -0.29 0.98 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.88 5.93 -51.93 -0.31 0.57 16 43 H 0.08 1.55 7.74 -51.93 -0.40 1.15 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.38 9.41 5.93 -40.82 -0.24 9.17 16 47 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -28.28 353.45 -7.98 -36.25 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -8.47 Total: 8.95 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 0.12 Total: -4.98 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.02 Total: -52.79 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.06 Total: -9.37 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.28 -7.98 -36.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035907281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.322 kcal (2) G-P(sol) polarization free energy of solvation -28.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds