Wall clock time and date at job start Tue Mar 31 2020 06:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 109.52977 * 2 1 4 4 C 1.53194 * 109.49625 * 239.91503 * 2 1 3 5 5 N 1.46918 * 108.78089 * 185.41610 * 4 2 1 6 6 C 1.34772 * 120.63533 * 233.59191 * 5 4 2 7 7 O 1.21280 * 119.99896 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00383 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.47283 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46933 * 59.99747 * 9 8 6 11 11 C 1.52998 * 109.47064 * 180.02562 * 9 8 6 12 12 C 1.53001 * 109.46872 * 300.00077 * 9 8 6 13 13 C 1.46929 * 118.73922 * 53.60697 * 5 4 2 14 14 C 1.53196 * 108.77486 * 306.39780 * 13 5 4 15 15 C 1.53037 * 109.31315 * 54.63188 * 14 13 5 16 16 H 1.08996 * 109.45814 * 178.62511 * 15 14 13 17 17 N 1.46505 * 109.46151 * 58.65628 * 15 14 13 18 18 C 1.36933 * 120.00099 * 84.99818 * 17 15 14 19 19 H 1.08001 * 120.00067 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00259 * 180.02562 * 18 17 15 21 21 N 1.31627 * 119.99655 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00247 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47036 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46973 * 120.00309 * 22 20 18 25 25 H 1.48505 * 109.46986 * 239.99762 * 22 20 18 26 26 H 1.08999 * 109.46654 * 299.92265 * 1 2 3 27 27 H 1.09000 * 109.47055 * 59.91775 * 1 2 3 28 28 H 1.09001 * 109.47391 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.58991 * 305.21097 * 4 2 1 30 30 H 1.09000 * 109.58500 * 65.48428 * 4 2 1 31 31 H 1.08996 * 109.47253 * 299.99593 * 8 6 5 32 32 H 1.08999 * 109.46911 * 60.00184 * 8 6 5 33 33 H 1.09007 * 109.46805 * 60.00279 * 10 9 8 34 34 H 1.09002 * 109.46863 * 179.97438 * 10 9 8 35 35 H 1.08998 * 109.47330 * 300.00196 * 10 9 8 36 36 H 1.08999 * 109.47093 * 60.00319 * 11 9 8 37 37 H 1.09001 * 109.46779 * 179.97438 * 11 9 8 38 38 H 1.08996 * 109.47289 * 299.99593 * 11 9 8 39 39 H 1.09004 * 109.47322 * 60.00310 * 12 9 8 40 40 H 1.09001 * 109.47021 * 179.97438 * 12 9 8 41 41 H 1.08999 * 109.47531 * 299.99832 * 12 9 8 42 42 H 1.08998 * 109.59209 * 186.60595 * 13 5 4 43 43 H 1.09003 * 109.58217 * 66.17876 * 13 5 4 44 44 H 1.08998 * 109.49640 * 174.58442 * 14 13 5 45 45 H 1.08996 * 109.49713 * 294.67755 * 14 13 5 46 46 H 0.97005 * 119.99632 * 265.00173 * 17 15 14 47 47 H 0.96999 * 119.99852 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5045 -0.8294 -1.1697 6 6 4.2810 -0.3867 -2.1783 7 8 3.7731 0.1048 -3.1639 8 6 5.7805 -0.5024 -2.0816 9 6 6.4189 0.0689 -3.3493 10 6 6.0295 1.5411 -3.4975 11 6 7.9412 -0.0492 -3.2514 12 6 5.9244 -0.7145 -4.5670 13 6 4.1052 -1.4269 0.0307 14 6 3.5708 -0.6952 1.2660 15 6 2.0408 -0.7232 1.2483 16 1 1.6583 -0.2244 2.1388 17 7 1.5782 -2.1131 1.2308 18 6 1.4467 -2.8058 2.4047 19 1 1.6836 -2.3273 3.3435 20 6 1.0089 -4.1230 2.3881 21 7 0.7197 -4.7059 1.2440 22 14 0.8302 -5.0681 3.9895 23 1 1.2148 -4.1933 5.1261 24 1 -0.5808 -5.5010 4.1539 25 1 1.7139 -6.2613 3.9613 26 1 -0.3632 0.5126 0.8907 27 1 -0.3633 0.5151 -0.8892 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6051 -1.7217 -1.2981 30 1 1.7615 -0.1594 -2.1390 31 1 6.1327 0.0553 -1.2140 32 1 6.0579 -1.5513 -1.9766 33 1 6.3818 2.0992 -2.6299 34 1 6.4847 1.9482 -4.4004 35 1 4.9450 1.6248 -3.5674 36 1 8.2182 -1.0981 -3.1462 37 1 8.3960 0.3574 -4.1547 38 1 8.2939 0.5086 -2.3840 39 1 4.8398 -0.6307 -4.6370 40 1 6.3788 -0.3072 -5.4701 41 1 6.2017 -1.7633 -4.4615 42 1 5.1895 -1.3249 -0.0138 43 1 3.8373 -2.4820 0.0867 44 1 3.9334 -1.1898 2.1670 45 1 3.9160 0.3386 1.2540 46 1 1.3652 -2.5428 0.3876 47 1 0.4142 -5.6265 1.2324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035907281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:05 Heat of formation + Delta-G solvation = -57.505371 kcal Electronic energy + Delta-G solvation = -23973.628886 eV Core-core repulsion = 20769.301151 eV Total energy + Delta-G solvation = -3204.327735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.51084 -39.54912 -37.26824 -35.79886 -34.47547 -32.95422 -30.90589 -29.81623 -28.05877 -27.97873 -27.26459 -26.10651 -25.20012 -23.02284 -21.24448 -19.88836 -19.36580 -19.12105 -18.03548 -16.79511 -16.70706 -16.30010 -15.95391 -15.55298 -15.29081 -15.22858 -15.06726 -14.85372 -14.47917 -14.22859 -13.74196 -13.53147 -13.08211 -12.96536 -12.94262 -12.90001 -12.85105 -12.65208 -12.62042 -12.42756 -12.17660 -12.03728 -12.01748 -11.92618 -11.74624 -11.55501 -11.50869 -11.49364 -11.13177 -10.85838 -10.33462 -9.48136 -8.90711 -7.87958 -5.13970 1.49319 1.50932 1.59379 1.72245 2.11808 2.60597 3.46233 3.59542 3.78728 3.89916 3.92523 3.98231 4.08647 4.13473 4.26089 4.35904 4.43302 4.56607 4.64794 4.65962 4.68607 4.70568 4.74207 4.87737 4.88178 4.90318 4.98712 5.02067 5.06177 5.12068 5.15284 5.21323 5.25179 5.29593 5.31122 5.33578 5.42001 5.49605 5.58168 5.61628 5.64431 5.75066 6.34117 6.58503 7.30133 7.41570 8.18334 8.41684 9.35629 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023929 B = 0.004323 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.862306 B = 6474.997432 C = 6931.649518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 H 0.085 0.915 4 C 0.125 3.875 5 N -0.605 5.605 6 C 0.509 3.491 7 O -0.569 6.569 8 C -0.128 4.128 9 C -0.051 4.051 10 C -0.149 4.149 11 C -0.136 4.136 12 C -0.152 4.152 13 C 0.120 3.880 14 C -0.142 4.142 15 C 0.171 3.829 16 H 0.046 0.954 17 N -0.725 5.725 18 C -0.225 4.225 19 H 0.076 0.924 20 C -0.073 4.073 21 N -0.970 5.970 22 Si 0.963 3.037 23 H -0.266 1.266 24 H -0.301 1.301 25 H -0.298 1.298 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.106 0.894 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.373 0.627 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.699 11.814 -5.833 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.117 4.117 3 H 0.103 0.897 4 C 0.001 3.999 5 N -0.337 5.337 6 C 0.299 3.701 7 O -0.449 6.449 8 C -0.167 4.167 9 C -0.051 4.051 10 C -0.206 4.206 11 C -0.194 4.194 12 C -0.209 4.209 13 C -0.003 4.003 14 C -0.182 4.182 15 C 0.062 3.938 16 H 0.064 0.936 17 N -0.366 5.366 18 C -0.357 4.357 19 H 0.094 0.906 20 C -0.265 4.265 21 N -0.621 5.621 22 Si 0.794 3.206 23 H -0.191 1.191 24 H -0.229 1.229 25 H -0.226 1.226 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.124 0.876 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.206 0.794 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.440 12.044 -6.139 18.371 hybrid contribution -0.741 -1.298 0.578 1.603 sum 11.698 10.745 -5.561 16.830 Atomic orbital electron populations 1.21603 0.94337 1.01361 1.01670 1.21608 0.96378 0.99270 0.94437 0.89696 1.21405 0.80054 0.99743 0.98649 1.48233 1.06515 1.60110 1.18821 1.21241 0.90753 0.76546 0.81526 1.90532 1.76400 1.46352 1.31665 1.21873 0.89487 1.04303 1.01052 1.20296 0.95851 0.95703 0.93298 1.22036 1.02498 0.94733 1.01326 1.21846 0.92690 1.02317 1.02518 1.22063 1.02255 0.99131 0.97448 1.21654 0.98397 0.96772 0.83432 1.22388 0.98123 1.00283 0.97454 1.20454 0.92553 0.85097 0.95661 0.93644 1.42603 1.79114 1.09314 1.05560 1.19617 1.34520 0.93840 0.87709 0.90645 1.25375 1.03643 0.98439 0.99058 1.69818 1.54051 1.12791 1.25488 0.85218 0.76360 0.78624 0.80437 1.19063 1.22902 1.22569 0.92259 0.91827 0.94304 0.93778 0.90053 0.87000 0.88062 0.92592 0.92679 0.92402 0.92105 0.92006 0.91565 0.92550 0.92523 0.93242 0.87587 0.93323 0.91506 0.90524 0.79368 0.94445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.05 71.98 0.65 -3.55 16 2 C -0.10 -3.08 2.67 -10.71 -0.03 -3.11 16 3 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.12 4.22 5.41 86.36 0.47 4.68 16 5 N -0.61 -18.53 2.97 -818.90 -2.43 -20.96 16 6 C 0.51 14.77 7.11 87.66 0.62 15.39 16 7 O -0.57 -19.44 10.76 -3.03 -0.03 -19.47 16 8 C -0.13 -2.68 3.12 29.85 0.09 -2.58 16 9 C -0.05 -1.03 0.77 -52.18 -0.04 -1.07 16 10 C -0.15 -3.20 8.18 71.98 0.59 -2.61 16 11 C -0.14 -2.03 8.47 71.98 0.61 -1.42 16 12 C -0.15 -3.52 8.17 71.98 0.59 -2.93 16 13 C 0.12 3.52 6.08 86.36 0.53 4.04 16 14 C -0.14 -4.27 5.78 30.67 0.18 -4.09 16 15 C 0.17 6.14 2.53 45.02 0.11 6.25 16 16 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16 17 N -0.72 -33.39 3.64 -322.81 -1.17 -34.57 16 18 C -0.22 -11.65 9.93 84.03 0.83 -10.81 16 19 H 0.08 3.77 7.83 -2.91 -0.02 3.74 16 20 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 21 N -0.97 -57.73 13.06 21.65 0.28 -57.45 16 22 Si 0.96 44.95 29.55 68.60 2.03 46.98 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.04 1.48 7.54 -2.39 -0.02 1.46 16 29 H 0.04 1.74 6.64 -2.38 -0.02 1.73 16 30 H 0.08 2.77 7.01 -2.39 -0.02 2.75 16 31 H 0.11 1.88 7.69 -2.39 -0.02 1.87 16 32 H 0.10 1.95 7.94 -2.39 -0.02 1.93 16 33 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.59 5.51 -2.39 -0.01 1.58 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 1.66 5.51 -2.38 -0.01 1.65 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 42 H 0.11 2.33 5.93 -2.39 -0.01 2.32 16 43 H 0.05 1.80 7.74 -2.39 -0.02 1.78 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.37 18.95 5.93 -92.70 -0.55 18.40 16 47 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -62.27 353.45 4.72 -57.55 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 0.38 Total: 33.29 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 5.67 Total: -5.36 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -3.33 Total: -112.98 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.03 Total: -19.47 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -62.27 4.72 -57.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035907281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.045 kcal (2) G-P(sol) polarization free energy of solvation -62.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds