Wall clock time and date at job start Tue Mar 31 2020 06:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.49995 * 2 1 4 4 C 1.53191 * 109.49606 * 120.10026 * 2 1 3 5 5 N 1.46928 * 108.77383 * 174.58705 * 4 2 1 6 6 C 1.34771 * 120.63462 * 126.41435 * 5 4 2 7 7 O 1.21280 * 119.99852 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00316 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.47179 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47155 * 59.99823 * 9 8 6 11 11 C 1.52998 * 109.46898 * 179.97438 * 9 8 6 12 12 C 1.52996 * 109.47032 * 299.99612 * 9 8 6 13 13 C 1.46930 * 118.73802 * 306.38661 * 5 4 2 14 14 C 1.53196 * 108.76551 * 53.61676 * 13 5 4 15 15 C 1.53039 * 109.31321 * 305.34809 * 14 13 5 16 16 H 1.09002 * 109.46050 * 181.39730 * 15 14 13 17 17 N 1.46499 * 109.45897 * 301.36773 * 15 14 13 18 18 C 1.36934 * 120.00125 * 275.02767 * 17 15 14 19 19 H 1.08004 * 119.99720 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00284 * 179.97438 * 18 17 15 21 21 N 1.31620 * 119.99674 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00258 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47078 * 90.00051 * 22 20 18 24 24 H 1.48499 * 109.47146 * 210.00154 * 22 20 18 25 25 H 1.48504 * 109.46952 * 330.00205 * 22 20 18 26 26 H 1.08997 * 109.47031 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46593 * 300.06525 * 1 2 3 28 28 H 1.08996 * 109.46765 * 60.06253 * 1 2 3 29 29 H 1.08998 * 109.58764 * 294.36979 * 4 2 1 30 30 H 1.08994 * 109.58994 * 54.65862 * 4 2 1 31 31 H 1.09002 * 109.46845 * 299.99792 * 8 6 5 32 32 H 1.08995 * 109.47504 * 59.99708 * 8 6 5 33 33 H 1.09002 * 109.47076 * 59.99845 * 10 9 8 34 34 H 1.08999 * 109.47268 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.46854 * 300.00325 * 10 9 8 36 36 H 1.09003 * 109.47147 * 60.00072 * 11 9 8 37 37 H 1.08999 * 109.46796 * 180.02562 * 11 9 8 38 38 H 1.09002 * 109.47154 * 300.00045 * 11 9 8 39 39 H 1.09004 * 109.46863 * 59.99745 * 12 9 8 40 40 H 1.08999 * 109.47021 * 179.97438 * 12 9 8 41 41 H 1.09003 * 109.47361 * 300.00141 * 12 9 8 42 42 H 1.08996 * 109.58956 * 173.39790 * 13 5 4 43 43 H 1.09004 * 109.58657 * 293.82835 * 13 5 4 44 44 H 1.08997 * 109.48827 * 185.39743 * 14 13 5 45 45 H 1.09000 * 109.50277 * 65.30427 * 14 13 5 46 46 H 0.97006 * 119.99778 * 95.02481 * 17 15 14 47 47 H 0.97003 * 119.99928 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7242 1.2493 5 7 3.5046 -0.8295 1.1693 6 6 4.2811 -0.3872 2.1781 7 8 3.7732 0.1039 3.1639 8 6 5.7806 -0.5017 2.0808 9 6 6.4192 0.0702 3.3482 10 6 5.9258 -0.7136 4.5660 11 6 7.9415 -0.0467 3.2496 12 6 6.0287 1.5420 3.4965 13 6 4.1053 -1.4268 -0.0312 14 6 3.5708 -0.6945 -1.2661 15 6 2.0408 -0.7228 -1.2486 16 1 1.6581 -0.2239 -2.1390 17 7 1.5785 -2.1128 -1.2313 18 6 1.4478 -2.8055 -2.4053 19 1 1.6858 -2.3272 -3.3439 20 6 1.0103 -4.1228 -2.3889 21 7 0.7206 -4.7058 -1.2449 22 14 0.8326 -5.0680 -3.9902 23 1 2.1104 -5.7571 -4.3027 24 1 -0.2516 -6.0735 -3.8538 25 1 0.4977 -4.1247 -5.0872 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5149 0.8895 28 1 -0.3633 0.5129 -0.8905 29 1 1.7638 -0.1586 2.1388 30 1 1.6033 -1.7211 1.2988 31 1 6.0588 -1.5503 1.9746 32 1 6.1322 0.0570 1.2134 33 1 6.2040 -1.7622 4.4603 34 1 6.3803 -0.3060 5.4690 35 1 4.8412 -0.6308 4.6364 36 1 8.2933 0.5114 2.3819 37 1 8.3963 0.3602 4.1527 38 1 8.2193 -1.0954 3.1441 39 1 4.9441 1.6248 3.5668 40 1 6.4832 1.9492 4.3996 41 1 6.3802 2.1004 2.6288 42 1 5.1895 -1.3247 0.0132 43 1 3.8374 -2.4819 -0.0876 44 1 3.9336 -1.1887 -2.1673 45 1 3.9157 0.3394 -1.2537 46 1 1.3651 -2.5425 -0.3882 47 1 0.4153 -5.6265 -1.2334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035907284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:08 Heat of formation + Delta-G solvation = -42.495552 kcal Electronic energy + Delta-G solvation = -23973.249981 eV Core-core repulsion = 20769.573121 eV Total energy + Delta-G solvation = -3203.676861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.29184 -38.25530 -36.19972 -34.25361 -32.85864 -31.38860 -29.20843 -28.73284 -27.19581 -27.11999 -25.88549 -24.61581 -23.45783 -21.64405 -20.06309 -18.69489 -17.99808 -17.37386 -16.78551 -15.56267 -15.38916 -14.68551 -14.46671 -14.32622 -14.24123 -13.99409 -13.78433 -13.37834 -13.15074 -12.69957 -12.51537 -12.21223 -12.15164 -12.05716 -11.72481 -11.62263 -11.37512 -11.30946 -11.08898 -10.99621 -10.90908 -10.77218 -10.65523 -10.62874 -10.47963 -10.35320 -10.19604 -9.83009 -9.55601 -9.16819 -8.93572 -8.14746 -6.98856 -5.80476 -3.08854 2.90321 3.34350 3.40153 3.46246 3.47590 4.56133 4.67802 4.70669 4.84360 5.12698 5.24334 5.34002 5.38393 5.47573 5.49277 5.56112 5.57955 5.60361 5.62569 5.74094 5.78072 5.83070 5.87206 5.91202 5.94249 6.07719 6.10233 6.11824 6.14274 6.23237 6.26633 6.33084 6.41411 6.51020 6.54073 6.61139 6.66412 6.69141 6.78471 6.94477 7.04031 7.67108 7.80416 8.38093 8.50262 9.49736 10.06729 10.41873 11.41932 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023925 B = 0.004324 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.048464 B = 6474.174958 C = 6930.973024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.064 0.936 4 C 0.119 3.881 5 N -0.602 5.602 6 C 0.514 3.486 7 O -0.547 6.547 8 C -0.131 4.131 9 C -0.051 4.051 10 C -0.153 4.153 11 C -0.142 4.142 12 C -0.152 4.152 13 C 0.113 3.887 14 C -0.150 4.150 15 C 0.178 3.822 16 H 0.050 0.950 17 N -0.718 5.718 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.932 5.932 22 Si 0.904 3.096 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.283 1.283 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.414 10.147 6.559 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.004 4.004 5 N -0.334 5.334 6 C 0.303 3.697 7 O -0.426 6.426 8 C -0.171 4.171 9 C -0.051 4.051 10 C -0.210 4.210 11 C -0.199 4.199 12 C -0.209 4.209 13 C -0.009 4.009 14 C -0.191 4.191 15 C 0.068 3.932 16 H 0.068 0.932 17 N -0.361 5.361 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.207 4.207 21 N -0.581 5.581 22 Si 0.735 3.265 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.209 1.209 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.066 0.934 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.113 10.321 6.890 16.008 hybrid contribution -0.017 -0.885 -0.879 1.247 sum 10.096 9.435 6.011 15.069 Atomic orbital electron populations 1.21667 0.94323 1.03146 1.00372 1.21693 0.96428 0.98784 0.95865 0.91745 1.21607 0.78919 1.01391 0.98443 1.48180 1.07075 1.59817 1.18278 1.20574 0.89356 0.77427 0.82382 1.90517 1.75622 1.45557 1.30946 1.21791 0.92383 1.03156 0.99766 1.20261 0.94272 0.96378 0.94216 1.22104 1.04185 0.98497 0.96224 1.21900 0.94850 1.01567 1.01589 1.22097 1.04361 0.94078 1.00371 1.21727 0.96393 0.98984 0.83819 1.22522 1.00504 0.98574 0.97499 1.20213 0.90785 0.87358 0.94843 0.93222 1.42477 1.78984 1.07704 1.06925 1.19222 1.37207 0.93884 0.86586 0.91279 1.24697 1.02269 0.97179 0.96579 1.69651 1.51735 1.13002 1.23675 0.86242 0.77278 0.79835 0.83117 1.21835 1.21887 1.20856 0.91068 0.93803 0.92879 0.89879 0.90858 0.89157 0.89251 0.93630 0.93404 0.89598 0.92804 0.92600 0.92734 0.89621 0.93409 0.93754 0.91228 0.89792 0.90825 0.93378 0.78087 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.05 37.16 0.34 -1.88 16 2 C -0.11 -1.76 2.67 -90.50 -0.24 -2.00 16 3 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 4 C 0.12 2.00 5.42 -3.71 -0.02 1.98 16 5 N -0.60 -9.53 2.97 -172.77 -0.51 -10.04 16 6 C 0.51 7.81 7.11 -10.99 -0.08 7.73 16 7 O -0.55 -9.43 10.76 5.56 0.06 -9.37 16 8 C -0.13 -1.57 3.12 -27.88 -0.09 -1.65 16 9 C -0.05 -0.58 0.77 -154.51 -0.12 -0.70 16 10 C -0.15 -1.87 8.17 37.16 0.30 -1.57 16 11 C -0.14 -1.31 8.47 37.16 0.31 -1.00 16 12 C -0.15 -1.80 8.18 37.16 0.30 -1.49 16 13 C 0.11 1.76 6.08 -3.71 -0.02 1.74 16 14 C -0.15 -2.42 5.78 -26.61 -0.15 -2.58 16 15 C 0.18 3.29 2.53 -67.89 -0.17 3.12 16 16 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 17 N -0.72 -16.36 3.64 -53.38 -0.19 -16.56 16 18 C -0.24 -6.15 9.93 -15.06 -0.15 -6.30 16 19 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 20 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 21 N -0.93 -26.93 13.06 55.49 0.72 -26.20 16 22 Si 0.90 21.63 29.55 -169.99 -5.02 16.60 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H 0.07 1.33 7.54 -51.93 -0.39 0.94 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.40 7.01 -51.93 -0.36 1.04 16 30 H 0.07 1.38 6.64 -51.93 -0.35 1.04 16 31 H 0.09 1.01 7.94 -51.93 -0.41 0.60 16 32 H 0.09 0.96 7.69 -51.93 -0.40 0.56 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 1.27 5.51 -51.93 -0.29 0.98 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.09 1.22 5.51 -51.93 -0.29 0.94 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.88 5.93 -51.93 -0.31 0.58 16 43 H 0.08 1.55 7.74 -51.93 -0.40 1.15 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.38 9.41 5.93 -40.82 -0.24 9.17 16 47 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -28.25 353.44 -7.98 -36.23 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -8.47 Total: 9.01 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 0.12 Total: -4.99 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.02 Total: -52.80 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.06 Total: -9.37 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.25 -7.98 -36.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035907284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.268 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds