Wall clock time and date at job start Tue Mar 31 2020 06:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.49995 * 2 1 4 4 C 1.53191 * 109.49606 * 120.10026 * 2 1 3 5 5 N 1.46928 * 108.77383 * 174.58705 * 4 2 1 6 6 C 1.34771 * 120.63462 * 126.41435 * 5 4 2 7 7 O 1.21280 * 119.99852 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00316 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.47179 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47155 * 59.99823 * 9 8 6 11 11 C 1.52998 * 109.46898 * 179.97438 * 9 8 6 12 12 C 1.52996 * 109.47032 * 299.99612 * 9 8 6 13 13 C 1.46930 * 118.73802 * 306.38661 * 5 4 2 14 14 C 1.53196 * 108.76551 * 53.61676 * 13 5 4 15 15 C 1.53039 * 109.31321 * 305.34809 * 14 13 5 16 16 H 1.09002 * 109.46050 * 181.39730 * 15 14 13 17 17 N 1.46499 * 109.45897 * 301.36773 * 15 14 13 18 18 C 1.36934 * 120.00125 * 275.02767 * 17 15 14 19 19 H 1.08004 * 119.99720 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00284 * 179.97438 * 18 17 15 21 21 N 1.31620 * 119.99674 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00258 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47078 * 90.00051 * 22 20 18 24 24 H 1.48499 * 109.47146 * 210.00154 * 22 20 18 25 25 H 1.48504 * 109.46952 * 330.00205 * 22 20 18 26 26 H 1.08997 * 109.47031 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46593 * 300.06525 * 1 2 3 28 28 H 1.08996 * 109.46765 * 60.06253 * 1 2 3 29 29 H 1.08998 * 109.58764 * 294.36979 * 4 2 1 30 30 H 1.08994 * 109.58994 * 54.65862 * 4 2 1 31 31 H 1.09002 * 109.46845 * 299.99792 * 8 6 5 32 32 H 1.08995 * 109.47504 * 59.99708 * 8 6 5 33 33 H 1.09002 * 109.47076 * 59.99845 * 10 9 8 34 34 H 1.08999 * 109.47268 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.46854 * 300.00325 * 10 9 8 36 36 H 1.09003 * 109.47147 * 60.00072 * 11 9 8 37 37 H 1.08999 * 109.46796 * 180.02562 * 11 9 8 38 38 H 1.09002 * 109.47154 * 300.00045 * 11 9 8 39 39 H 1.09004 * 109.46863 * 59.99745 * 12 9 8 40 40 H 1.08999 * 109.47021 * 179.97438 * 12 9 8 41 41 H 1.09003 * 109.47361 * 300.00141 * 12 9 8 42 42 H 1.08996 * 109.58956 * 173.39790 * 13 5 4 43 43 H 1.09004 * 109.58657 * 293.82835 * 13 5 4 44 44 H 1.08997 * 109.48827 * 185.39743 * 14 13 5 45 45 H 1.09000 * 109.50277 * 65.30427 * 14 13 5 46 46 H 0.97006 * 119.99778 * 95.02481 * 17 15 14 47 47 H 0.97003 * 119.99928 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7242 1.2493 5 7 3.5046 -0.8295 1.1693 6 6 4.2811 -0.3872 2.1781 7 8 3.7732 0.1039 3.1639 8 6 5.7806 -0.5017 2.0808 9 6 6.4192 0.0702 3.3482 10 6 5.9258 -0.7136 4.5660 11 6 7.9415 -0.0467 3.2496 12 6 6.0287 1.5420 3.4965 13 6 4.1053 -1.4268 -0.0312 14 6 3.5708 -0.6945 -1.2661 15 6 2.0408 -0.7228 -1.2486 16 1 1.6581 -0.2239 -2.1390 17 7 1.5785 -2.1128 -1.2313 18 6 1.4478 -2.8055 -2.4053 19 1 1.6858 -2.3272 -3.3439 20 6 1.0103 -4.1228 -2.3889 21 7 0.7206 -4.7058 -1.2449 22 14 0.8326 -5.0680 -3.9902 23 1 2.1104 -5.7571 -4.3027 24 1 -0.2516 -6.0735 -3.8538 25 1 0.4977 -4.1247 -5.0872 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5149 0.8895 28 1 -0.3633 0.5129 -0.8905 29 1 1.7638 -0.1586 2.1388 30 1 1.6033 -1.7211 1.2988 31 1 6.0588 -1.5503 1.9746 32 1 6.1322 0.0570 1.2134 33 1 6.2040 -1.7622 4.4603 34 1 6.3803 -0.3060 5.4690 35 1 4.8412 -0.6308 4.6364 36 1 8.2933 0.5114 2.3819 37 1 8.3963 0.3602 4.1527 38 1 8.2193 -1.0954 3.1441 39 1 4.9441 1.6248 3.5668 40 1 6.4832 1.9492 4.3996 41 1 6.3802 2.1004 2.6288 42 1 5.1895 -1.3247 0.0132 43 1 3.8374 -2.4819 -0.0876 44 1 3.9336 -1.1887 -2.1673 45 1 3.9157 0.3394 -1.2537 46 1 1.3651 -2.5425 -0.3882 47 1 0.4153 -5.6265 -1.2334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035907284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:07 Heat of formation + Delta-G solvation = -57.396247 kcal Electronic energy + Delta-G solvation = -23973.896124 eV Core-core repulsion = 20769.573121 eV Total energy + Delta-G solvation = -3204.323003 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.51127 -39.54852 -37.26880 -35.79745 -34.47516 -32.95456 -30.90488 -29.81634 -28.05886 -27.97878 -27.26396 -26.10509 -25.19745 -23.02241 -21.24387 -19.88745 -19.36429 -19.12038 -18.03578 -16.79489 -16.70725 -16.30006 -15.95014 -15.55637 -15.29147 -15.22841 -15.06655 -14.85316 -14.47804 -14.22550 -13.74213 -13.53201 -13.08279 -12.97007 -12.93761 -12.88515 -12.83652 -12.64796 -12.61733 -12.42786 -12.17594 -12.09203 -12.01625 -11.92757 -11.74379 -11.55351 -11.50666 -11.49379 -11.13145 -10.84443 -10.33478 -9.48223 -8.90604 -7.87677 -5.13717 1.50304 1.50969 1.58705 1.72203 2.11760 2.60828 3.46302 3.59536 3.78716 3.90010 3.92515 3.98226 4.08615 4.13601 4.26069 4.35897 4.43265 4.56637 4.64780 4.65920 4.68591 4.70547 4.74206 4.87744 4.88173 4.90336 4.98697 5.02017 5.06185 5.12020 5.15285 5.21306 5.25178 5.29558 5.31107 5.33559 5.41978 5.49555 5.58161 5.61453 5.64406 5.75059 6.34178 6.58448 7.30081 7.41706 8.18559 8.41956 9.35689 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023925 B = 0.004324 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.048464 B = 6474.174958 C = 6930.973024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 H 0.085 0.915 4 C 0.125 3.875 5 N -0.605 5.605 6 C 0.509 3.491 7 O -0.569 6.569 8 C -0.128 4.128 9 C -0.051 4.051 10 C -0.152 4.152 11 C -0.136 4.136 12 C -0.149 4.149 13 C 0.120 3.880 14 C -0.142 4.142 15 C 0.171 3.829 16 H 0.045 0.955 17 N -0.725 5.725 18 C -0.226 4.226 19 H 0.075 0.925 20 C -0.073 4.073 21 N -0.970 5.970 22 Si 0.963 3.037 23 H -0.290 1.290 24 H -0.303 1.303 25 H -0.272 1.272 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.106 0.894 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.373 0.627 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.643 11.769 5.847 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.117 4.117 3 H 0.103 0.897 4 C 0.002 3.998 5 N -0.337 5.337 6 C 0.299 3.701 7 O -0.449 6.449 8 C -0.167 4.167 9 C -0.051 4.051 10 C -0.209 4.209 11 C -0.194 4.194 12 C -0.206 4.206 13 C -0.003 4.003 14 C -0.183 4.183 15 C 0.062 3.938 16 H 0.063 0.937 17 N -0.366 5.366 18 C -0.359 4.359 19 H 0.093 0.907 20 C -0.265 4.265 21 N -0.621 5.621 22 Si 0.794 3.206 23 H -0.217 1.217 24 H -0.230 1.230 25 H -0.197 1.197 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.124 0.876 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.206 0.794 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.371 11.994 6.158 18.298 hybrid contribution -0.717 -1.288 -0.590 1.588 sum 11.654 10.706 5.568 16.776 Atomic orbital electron populations 1.21603 0.94338 1.01364 1.01664 1.21608 0.96382 0.99266 0.94437 0.89700 1.21403 0.80049 0.99747 0.98647 1.48235 1.06519 1.60127 1.18798 1.21240 0.90753 0.76543 0.81526 1.90531 1.76399 1.46364 1.31651 1.21874 0.89485 1.04302 1.01056 1.20295 0.95851 0.95702 0.93298 1.22063 1.02259 0.99130 0.97446 1.21848 0.92691 1.02318 1.02517 1.22035 1.02502 0.94736 1.01322 1.21654 0.98394 0.96772 0.83436 1.22390 0.98137 1.00274 0.97452 1.20453 0.92546 0.85106 0.95652 0.93662 1.42591 1.79146 1.09288 1.05556 1.19580 1.34685 0.93877 0.87716 0.90685 1.25374 1.03595 0.98423 0.99073 1.69810 1.53966 1.12789 1.25549 0.85282 0.76644 0.78423 0.80259 1.21701 1.23045 1.19687 0.94298 0.91825 0.92266 0.90064 0.93755 0.88060 0.87008 0.93242 0.92519 0.92548 0.91567 0.92002 0.92107 0.92408 0.92675 0.92587 0.87597 0.93329 0.91519 0.90524 0.79367 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.05 71.98 0.65 -3.56 16 2 C -0.10 -3.08 2.67 -10.71 -0.03 -3.11 16 3 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.12 4.22 5.42 86.36 0.47 4.69 16 5 N -0.61 -18.54 2.97 -818.90 -2.43 -20.98 16 6 C 0.51 14.78 7.11 87.66 0.62 15.40 16 7 O -0.57 -19.45 10.76 -3.03 -0.03 -19.48 16 8 C -0.13 -2.68 3.12 29.85 0.09 -2.59 16 9 C -0.05 -1.03 0.77 -52.18 -0.04 -1.07 16 10 C -0.15 -3.52 8.17 71.98 0.59 -2.93 16 11 C -0.14 -2.03 8.47 71.98 0.61 -1.42 16 12 C -0.15 -3.20 8.18 71.98 0.59 -2.61 16 13 C 0.12 3.53 6.08 86.36 0.53 4.05 16 14 C -0.14 -4.28 5.78 30.67 0.18 -4.10 16 15 C 0.17 6.15 2.53 45.02 0.11 6.27 16 16 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16 17 N -0.72 -33.42 3.64 -322.80 -1.17 -34.60 16 18 C -0.23 -11.75 9.93 84.03 0.83 -10.92 16 19 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 20 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 21 N -0.97 -57.71 13.06 21.65 0.28 -57.43 16 22 Si 0.96 44.94 29.55 68.60 2.03 46.96 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H 0.04 1.49 7.54 -2.39 -0.02 1.47 16 27 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 2.77 7.01 -2.39 -0.02 2.75 16 30 H 0.04 1.75 6.64 -2.39 -0.02 1.74 16 31 H 0.10 1.95 7.94 -2.39 -0.02 1.93 16 32 H 0.11 1.89 7.69 -2.39 -0.02 1.87 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.66 5.51 -2.39 -0.01 1.65 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 1.59 5.51 -2.39 -0.01 1.58 16 40 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.11 2.34 5.93 -2.39 -0.01 2.32 16 43 H 0.05 1.80 7.74 -2.39 -0.02 1.78 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.37 18.96 5.93 -92.70 -0.55 18.41 16 47 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -62.20 353.44 4.72 -57.48 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.38 Total: 33.47 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 5.67 Total: -5.42 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -3.33 Total: -113.00 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.03 Total: -19.48 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -62.20 4.72 -57.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035907284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.081 kcal (2) G-P(sol) polarization free energy of solvation -62.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds