Wall clock time and date at job start Tue Mar 31 2020 06:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.52537 * 2 1 4 4 C 1.53195 * 109.49760 * 120.07960 * 2 1 3 5 5 N 1.46919 * 108.89273 * 174.65835 * 4 2 1 6 6 C 1.34778 * 120.63255 * 126.34238 * 5 4 2 7 7 O 1.21279 * 120.00169 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00023 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.46931 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47154 * 60.00219 * 9 8 6 11 11 C 1.53000 * 109.47098 * 180.02562 * 9 8 6 12 12 C 1.52998 * 109.47058 * 300.00009 * 9 8 6 13 13 C 1.46933 * 118.74003 * 306.32349 * 5 4 2 14 14 C 1.53188 * 108.77495 * 53.60503 * 13 5 4 15 15 C 1.53034 * 109.31404 * 305.36890 * 14 13 5 16 16 H 1.09000 * 109.46169 * 301.34220 * 15 14 13 17 17 N 1.46500 * 109.45778 * 181.38788 * 15 14 13 18 18 C 1.36935 * 120.00267 * 85.00349 * 17 15 14 19 19 H 1.08005 * 119.99887 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00449 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00356 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99640 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47050 * 90.00302 * 22 20 18 24 24 H 1.48497 * 109.47140 * 209.99891 * 22 20 18 25 25 H 1.48496 * 109.47179 * 330.00347 * 22 20 18 26 26 H 1.09005 * 109.46904 * 299.91811 * 1 2 3 27 27 H 1.08994 * 109.46936 * 59.92176 * 1 2 3 28 28 H 1.08994 * 109.47295 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.58720 * 54.79865 * 4 2 1 30 30 H 1.08996 * 109.58651 * 294.51761 * 4 2 1 31 31 H 1.09001 * 109.47488 * 299.99559 * 8 6 5 32 32 H 1.09001 * 109.47269 * 59.99982 * 8 6 5 33 33 H 1.08996 * 109.47420 * 59.99857 * 10 9 8 34 34 H 1.09008 * 109.47080 * 180.02562 * 10 9 8 35 35 H 1.09003 * 109.46848 * 299.99610 * 10 9 8 36 36 H 1.09001 * 109.47240 * 59.99862 * 11 9 8 37 37 H 1.09002 * 109.47523 * 179.97438 * 11 9 8 38 38 H 1.09005 * 109.47553 * 300.00005 * 11 9 8 39 39 H 1.08995 * 109.47317 * 60.00393 * 12 9 8 40 40 H 1.09002 * 109.46995 * 180.02562 * 12 9 8 41 41 H 1.09001 * 109.47029 * 299.99985 * 12 9 8 42 42 H 1.08994 * 109.58580 * 173.39910 * 13 5 4 43 43 H 1.09002 * 109.58042 * 293.81990 * 13 5 4 44 44 H 1.08994 * 109.49494 * 65.32533 * 14 13 5 45 45 H 1.09000 * 109.49460 * 185.41816 * 14 13 5 46 46 H 0.96996 * 119.99751 * 264.99335 * 17 15 14 47 47 H 0.97000 * 120.00101 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5047 -0.8290 1.1731 6 6 4.2789 -0.3852 2.1831 7 8 3.7687 0.1072 3.1671 8 6 5.7786 -0.5007 2.0899 9 6 6.4140 0.0720 3.3584 10 6 5.9170 -0.7103 4.5757 11 6 7.9366 -0.0446 3.2635 12 6 6.0240 1.5443 3.5042 13 6 4.1083 -1.4277 -0.0253 14 6 3.5766 -0.6973 -1.2625 15 6 2.0466 -0.7256 -1.2483 16 1 1.7025 -1.7598 -1.2350 17 7 1.5350 -0.0567 -2.4471 18 6 1.4063 -0.7546 -3.6183 19 1 1.6823 -1.7980 -3.6583 20 6 0.9211 -0.1210 -4.7540 21 7 0.7978 -0.7916 -5.8798 22 14 0.4430 1.6834 -4.6846 23 1 1.6215 2.5211 -5.0234 24 1 -0.6465 1.9447 -5.6593 25 1 -0.0259 2.0190 -3.3162 26 1 -0.3633 0.5126 0.8908 27 1 -0.3633 0.5150 -0.8892 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6053 -1.7216 1.2981 30 1 1.7616 -0.1592 2.1390 31 1 6.0565 -1.5496 1.9865 32 1 6.1327 0.0563 1.2224 33 1 6.1948 -1.7591 4.4718 34 1 6.3694 -0.3019 5.4795 35 1 4.8323 -0.6267 4.6431 36 1 8.2904 0.5129 2.3963 37 1 8.3894 0.3638 4.1670 38 1 8.2149 -1.0934 3.1594 39 1 4.9393 1.6278 3.5717 40 1 6.4770 1.9524 4.4077 41 1 6.3781 2.1016 2.6370 42 1 5.1924 -1.3254 0.0216 43 1 3.8408 -2.4829 -0.0808 44 1 3.9216 0.3365 -1.2508 45 1 3.9413 -1.1929 -2.1622 46 1 1.2873 0.8804 -2.4112 47 1 0.4591 -0.3488 -6.6736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035907287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:11 Heat of formation + Delta-G solvation = -41.073151 kcal Electronic energy + Delta-G solvation = -23638.742703 eV Core-core repulsion = 20435.127523 eV Total energy + Delta-G solvation = -3203.615181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.47769 -38.31678 -36.36822 -34.73954 -32.95677 -31.57832 -29.93180 -28.85750 -27.30603 -27.24110 -26.13575 -24.86490 -22.57526 -21.60935 -20.31481 -19.47557 -18.46528 -17.56726 -17.03302 -15.79328 -15.52654 -14.99389 -14.52999 -14.45960 -14.37877 -14.12760 -13.79600 -13.39742 -13.29230 -12.86140 -12.53688 -12.44346 -12.22320 -12.20961 -11.95707 -11.84916 -11.77053 -11.45035 -11.34308 -11.15058 -11.04783 -10.88480 -10.79550 -10.75822 -10.64670 -10.51699 -10.24893 -9.78804 -9.60947 -9.38079 -8.95441 -8.48310 -7.30432 -5.80896 -3.16292 2.67759 3.07760 3.34384 3.37798 3.43051 4.48917 4.55564 4.55650 4.71274 4.94811 5.02776 5.06451 5.18467 5.25888 5.34557 5.36874 5.42730 5.46018 5.50924 5.54988 5.59019 5.65583 5.68959 5.76419 5.81575 5.84177 5.95167 6.00481 6.01518 6.01879 6.10419 6.12931 6.26910 6.27220 6.40830 6.41050 6.45171 6.55014 6.66521 6.78674 6.92733 7.51625 7.94777 8.27010 8.38320 9.16627 9.89512 10.09532 11.37424 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027447 B = 0.003913 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.893740 B = 7153.346076 C = 7398.861750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.067 0.933 4 C 0.120 3.880 5 N -0.608 5.608 6 C 0.516 3.484 7 O -0.541 6.541 8 C -0.132 4.132 9 C -0.051 4.051 10 C -0.152 4.152 11 C -0.142 4.142 12 C -0.153 4.153 13 C 0.106 3.894 14 C -0.152 4.152 15 C 0.189 3.811 16 H 0.056 0.944 17 N -0.745 5.745 18 C -0.243 4.243 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.882 3.118 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.277 1.277 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.045 0.955 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.081 0.919 46 H 0.361 0.639 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.541 0.059 18.187 21.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.086 0.914 4 C -0.003 4.003 5 N -0.341 5.341 6 C 0.305 3.695 7 O -0.420 6.420 8 C -0.172 4.172 9 C -0.052 4.052 10 C -0.210 4.210 11 C -0.200 4.200 12 C -0.210 4.210 13 C -0.017 4.017 14 C -0.193 4.193 15 C 0.079 3.921 16 H 0.074 0.926 17 N -0.387 5.387 18 C -0.372 4.372 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.581 5.581 22 Si 0.713 3.287 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.203 1.203 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.099 0.901 46 H 0.194 0.806 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.248 0.127 18.497 21.146 hybrid contribution -0.217 1.252 -0.413 1.337 sum 10.031 1.379 18.083 20.725 Atomic orbital electron populations 1.21663 0.94202 1.02102 1.01537 1.21833 0.96494 0.99982 0.95011 0.91428 1.21645 0.78866 1.00760 0.98983 1.48238 1.07078 1.60420 1.18347 1.20633 0.89464 0.77199 0.82223 1.90535 1.75496 1.44917 1.31069 1.21812 0.92108 1.03176 1.00106 1.20270 0.94405 0.96444 0.94052 1.22099 1.04045 0.98437 0.96370 1.21902 0.94708 1.01558 1.01783 1.22106 1.04294 0.94041 1.00605 1.21870 0.97737 0.97445 0.84636 1.22640 0.99885 1.00449 0.96337 1.20225 0.90524 0.96004 0.85355 0.92572 1.42773 1.78213 1.10176 1.07566 1.19051 1.36466 0.95779 0.85939 0.89214 1.24651 1.01320 0.97407 0.95617 1.69693 1.52178 1.35681 1.00587 0.86590 0.78241 0.86850 0.77059 1.21171 1.21771 1.20310 0.93589 0.91452 0.92593 0.91607 0.89351 0.89119 0.88961 0.93675 0.93292 0.89711 0.92683 0.92518 0.92738 0.89694 0.93292 0.93596 0.90304 0.91312 0.92309 0.90082 0.80641 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.04 37.16 0.34 -1.74 16 2 C -0.11 -1.74 2.47 -90.34 -0.22 -1.96 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.12 1.64 5.71 -3.71 -0.02 1.62 16 5 N -0.61 -7.88 2.97 -172.77 -0.51 -8.40 16 6 C 0.52 6.69 7.11 -10.99 -0.08 6.61 16 7 O -0.54 -8.26 10.76 5.56 0.06 -8.20 16 8 C -0.13 -1.33 3.12 -27.88 -0.09 -1.41 16 9 C -0.05 -0.51 0.77 -154.51 -0.12 -0.63 16 10 C -0.15 -1.59 8.18 37.16 0.30 -1.28 16 11 C -0.14 -1.15 8.47 37.16 0.31 -0.83 16 12 C -0.15 -1.68 8.17 37.16 0.30 -1.38 16 13 C 0.11 1.28 6.34 -3.71 -0.02 1.25 16 14 C -0.15 -2.36 5.66 -26.62 -0.15 -2.51 16 15 C 0.19 3.35 2.21 -67.73 -0.15 3.20 16 16 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 17 N -0.75 -16.65 4.23 -53.23 -0.23 -16.88 16 18 C -0.24 -6.52 10.41 -15.06 -0.16 -6.68 16 19 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -28.69 13.97 55.49 0.78 -27.92 16 22 Si 0.88 21.72 27.73 -169.99 -4.71 17.00 16 23 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.41 6.52 56.52 0.37 -6.05 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.17 7.39 -51.93 -0.38 0.79 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.25 7.00 -51.93 -0.36 0.88 16 31 H 0.09 0.77 7.94 -51.93 -0.41 0.36 16 32 H 0.09 0.86 7.69 -51.93 -0.40 0.46 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 35 H 0.08 1.08 5.51 -51.93 -0.29 0.79 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 1.13 5.51 -51.93 -0.29 0.85 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.77 5.93 -51.93 -0.31 0.46 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.36 8.11 5.38 -40.82 -0.22 7.89 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -30.36 354.36 -7.71 -38.08 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -8.59 Total: 6.65 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 0.15 Total: -5.67 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.04 Total: -53.19 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.06 Total: -8.20 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.36 -7.71 -38.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035907287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.998 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds