Wall clock time and date at job start Tue Mar 31 2020 06:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.52537 * 2 1 4 4 C 1.53195 * 109.49760 * 120.07960 * 2 1 3 5 5 N 1.46919 * 108.89273 * 174.65835 * 4 2 1 6 6 C 1.34778 * 120.63255 * 126.34238 * 5 4 2 7 7 O 1.21279 * 120.00169 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00023 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.46931 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47154 * 60.00219 * 9 8 6 11 11 C 1.53000 * 109.47098 * 180.02562 * 9 8 6 12 12 C 1.52998 * 109.47058 * 300.00009 * 9 8 6 13 13 C 1.46933 * 118.74003 * 306.32349 * 5 4 2 14 14 C 1.53188 * 108.77495 * 53.60503 * 13 5 4 15 15 C 1.53034 * 109.31404 * 305.36890 * 14 13 5 16 16 H 1.09000 * 109.46169 * 301.34220 * 15 14 13 17 17 N 1.46500 * 109.45778 * 181.38788 * 15 14 13 18 18 C 1.36935 * 120.00267 * 85.00349 * 17 15 14 19 19 H 1.08005 * 119.99887 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00449 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00356 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99640 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47050 * 90.00302 * 22 20 18 24 24 H 1.48497 * 109.47140 * 209.99891 * 22 20 18 25 25 H 1.48496 * 109.47179 * 330.00347 * 22 20 18 26 26 H 1.09005 * 109.46904 * 299.91811 * 1 2 3 27 27 H 1.08994 * 109.46936 * 59.92176 * 1 2 3 28 28 H 1.08994 * 109.47295 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.58720 * 54.79865 * 4 2 1 30 30 H 1.08996 * 109.58651 * 294.51761 * 4 2 1 31 31 H 1.09001 * 109.47488 * 299.99559 * 8 6 5 32 32 H 1.09001 * 109.47269 * 59.99982 * 8 6 5 33 33 H 1.08996 * 109.47420 * 59.99857 * 10 9 8 34 34 H 1.09008 * 109.47080 * 180.02562 * 10 9 8 35 35 H 1.09003 * 109.46848 * 299.99610 * 10 9 8 36 36 H 1.09001 * 109.47240 * 59.99862 * 11 9 8 37 37 H 1.09002 * 109.47523 * 179.97438 * 11 9 8 38 38 H 1.09005 * 109.47553 * 300.00005 * 11 9 8 39 39 H 1.08995 * 109.47317 * 60.00393 * 12 9 8 40 40 H 1.09002 * 109.46995 * 180.02562 * 12 9 8 41 41 H 1.09001 * 109.47029 * 299.99985 * 12 9 8 42 42 H 1.08994 * 109.58580 * 173.39910 * 13 5 4 43 43 H 1.09002 * 109.58042 * 293.81990 * 13 5 4 44 44 H 1.08994 * 109.49494 * 65.32533 * 14 13 5 45 45 H 1.09000 * 109.49460 * 185.41816 * 14 13 5 46 46 H 0.96996 * 119.99751 * 264.99335 * 17 15 14 47 47 H 0.97000 * 120.00101 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5047 -0.8290 1.1731 6 6 4.2789 -0.3852 2.1831 7 8 3.7687 0.1072 3.1671 8 6 5.7786 -0.5007 2.0899 9 6 6.4140 0.0720 3.3584 10 6 5.9170 -0.7103 4.5757 11 6 7.9366 -0.0446 3.2635 12 6 6.0240 1.5443 3.5042 13 6 4.1083 -1.4277 -0.0253 14 6 3.5766 -0.6973 -1.2625 15 6 2.0466 -0.7256 -1.2483 16 1 1.7025 -1.7598 -1.2350 17 7 1.5350 -0.0567 -2.4471 18 6 1.4063 -0.7546 -3.6183 19 1 1.6823 -1.7980 -3.6583 20 6 0.9211 -0.1210 -4.7540 21 7 0.7978 -0.7916 -5.8798 22 14 0.4430 1.6834 -4.6846 23 1 1.6215 2.5211 -5.0234 24 1 -0.6465 1.9447 -5.6593 25 1 -0.0259 2.0190 -3.3162 26 1 -0.3633 0.5126 0.8908 27 1 -0.3633 0.5150 -0.8892 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6053 -1.7216 1.2981 30 1 1.7616 -0.1592 2.1390 31 1 6.0565 -1.5496 1.9865 32 1 6.1327 0.0563 1.2224 33 1 6.1948 -1.7591 4.4718 34 1 6.3694 -0.3019 5.4795 35 1 4.8323 -0.6267 4.6431 36 1 8.2904 0.5129 2.3963 37 1 8.3894 0.3638 4.1670 38 1 8.2149 -1.0934 3.1594 39 1 4.9393 1.6278 3.5717 40 1 6.4770 1.9524 4.4077 41 1 6.3781 2.1016 2.6370 42 1 5.1924 -1.3254 0.0216 43 1 3.8408 -2.4829 -0.0808 44 1 3.9216 0.3365 -1.2508 45 1 3.9413 -1.1929 -2.1622 46 1 1.2873 0.8804 -2.4112 47 1 0.4591 -0.3488 -6.6736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035907287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:10 Heat of formation + Delta-G solvation = -58.639079 kcal Electronic energy + Delta-G solvation = -23639.504419 eV Core-core repulsion = 20435.127523 eV Total energy + Delta-G solvation = -3204.376896 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.49879 -39.49225 -37.33227 -36.18236 -34.49755 -33.21478 -31.50815 -29.79592 -28.06371 -27.98513 -27.35872 -26.33274 -24.08953 -23.00673 -21.56539 -20.63828 -19.52079 -19.26737 -18.08239 -16.82918 -16.74512 -16.47723 -16.05919 -15.32329 -15.27547 -15.26190 -15.15223 -14.83036 -14.52027 -14.34729 -13.87344 -13.56508 -13.42595 -13.05662 -12.97030 -12.95692 -12.88352 -12.80569 -12.62640 -12.43187 -12.17172 -12.11402 -12.02483 -11.87095 -11.85355 -11.74572 -11.54194 -11.49894 -11.17067 -10.91699 -10.35663 -9.57394 -9.26575 -8.00102 -5.31836 1.37995 1.39231 1.46748 1.70067 2.07889 2.49153 3.31801 3.52088 3.60286 3.77225 3.85227 3.97250 4.01225 4.06269 4.25323 4.31002 4.38393 4.50218 4.60729 4.64892 4.66585 4.69194 4.76406 4.82011 4.85088 4.87961 4.89750 4.96179 5.01497 5.02039 5.11726 5.16790 5.20926 5.27594 5.29333 5.37042 5.40189 5.50757 5.57225 5.61548 5.71936 5.80482 6.24275 6.51597 7.10357 7.28215 7.87508 8.05674 9.21528 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027447 B = 0.003913 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.893740 B = 7153.346076 C = 7398.861750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 H 0.061 0.939 4 C 0.126 3.874 5 N -0.611 5.611 6 C 0.511 3.489 7 O -0.566 6.566 8 C -0.130 4.130 9 C -0.052 4.052 10 C -0.149 4.149 11 C -0.138 4.138 12 C -0.152 4.152 13 C 0.115 3.885 14 C -0.144 4.144 15 C 0.181 3.819 16 H 0.047 0.953 17 N -0.748 5.748 18 C -0.218 4.218 19 H 0.061 0.939 20 C -0.062 4.062 21 N -0.984 5.984 22 Si 0.946 3.054 23 H -0.282 1.282 24 H -0.299 1.299 25 H -0.255 1.255 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.110 0.890 43 H 0.080 0.920 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.362 0.638 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.132 0.439 20.042 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 H 0.079 0.921 4 C 0.003 3.997 5 N -0.343 5.343 6 C 0.302 3.698 7 O -0.446 6.446 8 C -0.169 4.169 9 C -0.052 4.052 10 C -0.207 4.207 11 C -0.195 4.195 12 C -0.209 4.209 13 C -0.008 4.008 14 C -0.185 4.185 15 C 0.073 3.927 16 H 0.065 0.935 17 N -0.391 5.391 18 C -0.349 4.349 19 H 0.079 0.921 20 C -0.253 4.253 21 N -0.635 5.635 22 Si 0.775 3.225 23 H -0.208 1.208 24 H -0.226 1.226 25 H -0.180 1.180 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.128 0.872 43 H 0.098 0.902 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.195 0.805 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.866 0.506 20.419 23.622 hybrid contribution -0.698 1.067 -0.896 1.559 sum 11.168 1.573 19.523 22.547 Atomic orbital electron populations 1.21632 0.94026 1.02209 1.01411 1.21705 0.96623 0.99404 0.94509 0.92096 1.21514 0.79714 1.00937 0.97532 1.48305 1.06741 1.60582 1.18719 1.21205 0.90687 0.76337 0.81606 1.90549 1.76221 1.45801 1.32059 1.21891 0.89604 1.04820 1.00623 1.20296 0.95796 0.95380 0.93763 1.22042 1.02322 0.99299 0.97001 1.21856 0.92862 1.02507 1.02264 1.22063 1.02484 0.95267 1.01073 1.21868 0.99345 0.97250 0.82352 1.22448 0.97722 1.00636 0.97698 1.20480 0.92117 0.95373 0.84684 0.93530 1.42799 1.78578 1.10125 1.07570 1.19013 1.33862 0.94720 0.87349 0.92055 1.25374 1.02700 1.01843 0.95413 1.69862 1.54608 1.37635 1.01443 0.85535 0.77592 0.81583 0.77803 1.20844 1.22629 1.17966 0.91380 0.93851 0.92401 0.90604 0.89666 0.86873 0.87692 0.92592 0.92896 0.92262 0.92070 0.92237 0.91573 0.92340 0.92800 0.93198 0.87154 0.90180 0.92692 0.91738 0.80530 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 9.04 71.98 0.65 -3.26 16 2 C -0.10 -3.00 2.47 -10.61 -0.03 -3.02 16 3 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 4 C 0.13 3.20 5.71 86.36 0.49 3.69 16 5 N -0.61 -14.35 2.97 -818.92 -2.44 -16.78 16 6 C 0.51 12.08 7.11 87.66 0.62 12.71 16 7 O -0.57 -16.61 10.76 -3.03 -0.03 -16.64 16 8 C -0.13 -2.17 3.12 29.85 0.09 -2.08 16 9 C -0.05 -0.89 0.77 -52.18 -0.04 -0.93 16 10 C -0.15 -2.81 8.18 71.98 0.59 -2.23 16 11 C -0.14 -1.75 8.47 71.98 0.61 -1.14 16 12 C -0.15 -3.08 8.17 71.98 0.59 -2.49 16 13 C 0.11 2.42 6.34 86.36 0.55 2.96 16 14 C -0.14 -4.26 5.66 30.67 0.17 -4.09 16 15 C 0.18 6.29 2.21 45.12 0.10 6.39 16 16 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 17 N -0.75 -33.14 4.23 -322.33 -1.36 -34.50 16 18 C -0.22 -11.90 10.41 84.03 0.87 -11.03 16 19 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 20 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 21 N -0.98 -62.15 13.97 21.65 0.30 -61.84 16 22 Si 0.95 45.16 27.73 68.60 1.90 47.07 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 25 H -0.25 -11.06 6.52 99.48 0.65 -10.42 16 26 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.04 1.46 7.39 -2.39 -0.02 1.44 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.08 2.27 7.00 -2.39 -0.02 2.25 16 31 H 0.11 1.42 7.94 -2.39 -0.02 1.40 16 32 H 0.10 1.53 7.69 -2.39 -0.02 1.52 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.06 1.45 5.51 -2.39 -0.01 1.43 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 39 H 0.06 1.52 5.51 -2.39 -0.01 1.51 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.11 1.69 5.93 -2.39 -0.01 1.67 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.36 15.87 5.38 -92.71 -0.50 15.37 16 47 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -67.03 354.36 4.48 -62.55 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.37 Total: 27.77 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 5.74 Total: -7.61 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -3.50 Total: -113.13 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.03 Total: -16.64 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.07 kcal Total: -67.03 4.48 -62.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035907287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.910 kcal (2) G-P(sol) polarization free energy of solvation -67.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds