Wall clock time and date at job start Tue Mar 31 2020 06:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.52985 * 2 1 4 4 C 1.52762 * 109.56562 * 240.04009 * 2 1 3 5 5 N 1.46928 * 109.00894 * 185.55558 * 4 2 1 6 6 C 1.34780 * 120.62698 * 233.58766 * 5 4 2 7 7 O 1.21280 * 120.00423 * 359.71523 * 6 5 4 8 8 C 1.50701 * 119.99795 * 179.72199 * 6 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47317 * 59.99639 * 9 8 6 11 11 C 1.52992 * 109.47482 * 179.97438 * 9 8 6 12 12 C 1.53006 * 109.47127 * 300.00129 * 9 8 6 13 13 C 1.46920 * 118.74133 * 53.31141 * 5 4 2 14 14 C 1.53193 * 108.77389 * 306.64033 * 13 5 4 15 15 C 1.53040 * 109.30943 * 54.63814 * 14 13 5 16 16 H 1.08998 * 109.46254 * 58.65341 * 15 14 13 17 17 N 1.46511 * 109.45845 * 178.62675 * 15 14 13 18 18 C 1.36934 * 119.99776 * 274.99933 * 17 15 14 19 19 H 1.07995 * 119.99894 * 359.97438 * 18 17 15 20 20 C 1.38810 * 119.99882 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99866 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47243 * 59.99528 * 22 20 18 24 24 H 1.48497 * 109.47424 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47200 * 299.99829 * 22 20 18 26 26 H 1.09007 * 109.47001 * 299.92768 * 1 2 3 27 27 H 1.09007 * 109.47522 * 59.92037 * 1 2 3 28 28 H 1.08995 * 109.47748 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.50436 * 65.67374 * 4 2 1 30 30 H 1.08997 * 109.43158 * 305.39108 * 4 2 1 31 31 H 1.09002 * 109.47060 * 299.99722 * 8 6 5 32 32 H 1.09001 * 109.47380 * 59.99809 * 8 6 5 33 33 H 1.09002 * 109.46716 * 60.00091 * 10 9 8 34 34 H 1.09000 * 109.47486 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.47362 * 300.00732 * 10 9 8 36 36 H 1.09001 * 109.47066 * 60.00169 * 11 9 8 37 37 H 1.08996 * 109.47747 * 179.97438 * 11 9 8 38 38 H 1.09002 * 109.47103 * 300.00247 * 11 9 8 39 39 H 1.08993 * 109.46955 * 60.00011 * 12 9 8 40 40 H 1.09000 * 109.47050 * 179.97438 * 12 9 8 41 41 H 1.09001 * 109.47002 * 299.99574 * 12 9 8 42 42 H 1.08998 * 109.58454 * 66.42654 * 13 5 4 43 43 H 1.09001 * 109.58711 * 186.85731 * 13 5 4 44 44 H 1.09007 * 109.49938 * 174.58337 * 14 13 5 45 45 H 1.09003 * 109.50033 * 294.65210 * 14 13 5 46 46 H 0.97000 * 119.99523 * 94.99684 * 17 15 14 47 47 H 0.97000 * 119.99776 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0415 -0.7188 -1.2471 5 7 3.5045 -0.8293 -1.1694 6 6 4.2811 -0.3858 -2.1778 7 8 3.7732 0.1055 -3.1635 8 6 5.7806 -0.5005 -2.0806 9 6 6.4191 0.0716 -3.3478 10 6 6.0286 1.5435 -3.4959 11 6 7.9414 -0.0442 -3.2489 12 6 5.9256 -0.7118 -4.5659 13 6 4.1052 -1.4268 0.0309 14 6 3.5708 -0.6950 1.2661 15 6 2.0408 -0.7231 1.2484 16 1 1.6967 -1.7572 1.2354 17 7 1.5265 -0.0525 2.4452 18 6 1.3951 -0.7488 3.6170 19 1 1.6702 -1.7922 3.6588 20 6 0.9073 -0.1136 4.7508 21 7 0.5716 1.1581 4.6996 22 14 0.7274 -1.0635 6.3491 23 1 2.0545 -1.5799 6.7701 24 1 0.1900 -0.1642 7.4016 25 1 -0.2050 -2.2014 6.1463 26 1 -0.3633 0.5127 0.8907 27 1 -0.3634 0.5151 -0.8893 28 1 -0.3634 -1.0276 -0.0005 29 1 1.7645 -0.1497 -2.1345 30 1 1.6020 -1.7150 -1.2973 31 1 6.1321 0.0574 -1.2126 32 1 6.0588 -1.5491 -1.9756 33 1 6.3802 2.1017 -2.6281 34 1 6.4831 1.9510 -4.3989 35 1 4.9441 1.6265 -3.5661 36 1 8.2199 -1.0927 -3.1432 37 1 8.3963 0.3629 -4.1518 38 1 8.2926 0.5142 -2.3811 39 1 4.8411 -0.6289 -4.6362 40 1 6.3801 -0.3040 -5.4687 41 1 6.2038 -1.7605 -4.4605 42 1 3.8374 -2.4819 0.0869 43 1 5.1895 -1.3247 -0.0136 44 1 3.9333 -1.1896 2.1673 45 1 3.9164 0.3388 1.2544 46 1 1.2791 0.8847 2.4074 47 1 0.2311 1.6020 5.4920 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035907290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:14 Heat of formation + Delta-G solvation = -44.835839 kcal Electronic energy + Delta-G solvation = -23572.523292 eV Core-core repulsion = 20368.744949 eV Total energy + Delta-G solvation = -3203.778343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.41643 -38.22935 -36.29966 -34.60273 -32.90664 -31.47357 -29.46404 -28.72534 -27.27202 -27.19883 -25.97719 -24.77549 -22.77951 -21.66386 -20.22123 -19.29103 -18.39646 -17.12945 -16.98440 -15.72361 -15.46274 -14.98789 -14.45116 -14.40161 -14.26906 -13.96117 -13.76595 -13.39113 -13.26605 -12.79223 -12.49398 -12.31776 -12.17133 -12.14931 -11.81726 -11.77693 -11.57150 -11.31107 -11.15768 -11.08950 -10.93082 -10.80016 -10.74882 -10.71530 -10.58831 -10.38563 -10.24098 -9.75286 -9.62349 -9.32194 -8.91228 -8.40734 -6.98270 -5.79165 -3.07953 2.73579 3.14496 3.41247 3.46118 3.47089 4.53730 4.56436 4.59754 4.75215 5.01697 5.10236 5.25603 5.30914 5.36633 5.39675 5.41281 5.47790 5.52905 5.54420 5.62899 5.68911 5.69869 5.79834 5.80074 5.84985 5.96816 6.03478 6.05967 6.09223 6.12239 6.18487 6.30133 6.37705 6.43288 6.45255 6.52047 6.54676 6.66840 6.81463 6.92881 7.04895 7.58507 7.66247 8.33110 8.39131 9.50417 10.08034 10.42951 11.43272 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028869 B = 0.003708 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.678394 B = 7548.460180 C = 7976.310597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.120 3.880 5 N -0.607 5.607 6 C 0.515 3.485 7 O -0.542 6.542 8 C -0.132 4.132 9 C -0.051 4.051 10 C -0.153 4.153 11 C -0.142 4.142 12 C -0.152 4.152 13 C 0.106 3.894 14 C -0.152 4.152 15 C 0.184 3.816 16 H 0.047 0.953 17 N -0.721 5.721 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.904 -4.215 -15.194 19.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.086 0.914 4 C -0.003 4.003 5 N -0.340 5.340 6 C 0.305 3.695 7 O -0.421 6.421 8 C -0.172 4.172 9 C -0.052 4.052 10 C -0.210 4.210 11 C -0.199 4.199 12 C -0.209 4.209 13 C -0.017 4.017 14 C -0.193 4.193 15 C 0.074 3.926 16 H 0.065 0.935 17 N -0.361 5.361 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 H 0.092 0.908 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.603 -4.077 -15.543 19.252 hybrid contribution -0.014 -0.231 1.228 1.250 sum 10.589 -4.308 -14.315 18.319 Atomic orbital electron populations 1.21654 0.94158 1.01721 1.01821 1.21657 0.96550 1.00055 0.94731 0.91362 1.21589 0.78769 1.00662 0.99256 1.48229 1.07141 1.60357 1.18249 1.20618 0.89414 0.77222 0.82290 1.90534 1.75606 1.44963 1.30950 1.21808 0.92184 1.03092 1.00106 1.20270 0.94365 0.96490 0.94057 1.22106 1.04347 0.94000 1.00596 1.21899 0.94749 1.01511 1.01771 1.22099 1.04081 0.98384 0.96365 1.21867 0.97654 0.97323 0.84851 1.22689 1.00412 1.00389 0.95854 1.20191 0.90345 0.95660 0.86441 0.93478 1.42406 1.76520 1.11385 1.05776 1.19171 1.36054 0.94061 0.87766 0.91302 1.24725 1.02032 0.96011 0.98044 1.69650 1.49920 1.09465 1.29020 0.86299 0.77738 0.78721 0.83594 1.21328 1.21750 1.21301 0.90789 0.93845 0.93091 0.89426 0.91843 0.88967 0.89210 0.93559 0.93308 0.89658 0.92793 0.92528 0.92674 0.89689 0.93307 0.93727 0.91553 0.90479 0.90623 0.92221 0.78222 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.03 37.15 0.34 -1.88 16 2 C -0.11 -1.80 2.44 -90.72 -0.22 -2.02 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.12 1.73 5.69 -3.93 -0.02 1.71 16 5 N -0.61 -8.29 2.98 -173.03 -0.52 -8.81 16 6 C 0.52 7.00 7.11 -10.98 -0.08 6.92 16 7 O -0.54 -8.59 10.76 5.56 0.06 -8.53 16 8 C -0.13 -1.39 3.12 -27.88 -0.09 -1.48 16 9 C -0.05 -0.53 0.77 -154.51 -0.12 -0.65 16 10 C -0.15 -1.75 8.17 37.16 0.30 -1.45 16 11 C -0.14 -1.19 8.47 37.15 0.31 -0.87 16 12 C -0.15 -1.64 8.18 37.16 0.30 -1.33 16 13 C 0.11 1.34 6.34 -3.71 -0.02 1.31 16 14 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 15 C 0.18 3.43 2.20 -67.88 -0.15 3.28 16 16 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 17 N -0.72 -17.15 4.41 -53.38 -0.24 -17.39 16 18 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.55 13.06 55.49 0.72 -26.82 16 22 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H 0.07 1.41 7.36 -51.92 -0.38 1.03 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.31 7.01 -51.93 -0.36 0.95 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.91 7.69 -51.93 -0.40 0.51 16 32 H 0.09 0.80 7.94 -51.93 -0.41 0.39 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 1.18 5.51 -51.93 -0.29 0.90 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 1.11 5.51 -51.93 -0.29 0.83 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.38 9.90 7.51 -40.82 -0.31 9.59 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 357.35 15.07 5.39 5.39 Total: -1.00 -29.36 357.35 -8.07 -37.44 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -8.63 Total: 7.90 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 0.16 Total: -6.03 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.03 Total: -53.02 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.06 Total: -8.53 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.36 -8.07 -37.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035907290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.400 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds