Wall clock time and date at job start Tue Mar 31 2020 06:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.52985 * 2 1 4 4 C 1.52762 * 109.56562 * 240.04009 * 2 1 3 5 5 N 1.46928 * 109.00894 * 185.55558 * 4 2 1 6 6 C 1.34780 * 120.62698 * 233.58766 * 5 4 2 7 7 O 1.21280 * 120.00423 * 359.71523 * 6 5 4 8 8 C 1.50701 * 119.99795 * 179.72199 * 6 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47317 * 59.99639 * 9 8 6 11 11 C 1.52992 * 109.47482 * 179.97438 * 9 8 6 12 12 C 1.53006 * 109.47127 * 300.00129 * 9 8 6 13 13 C 1.46920 * 118.74133 * 53.31141 * 5 4 2 14 14 C 1.53193 * 108.77389 * 306.64033 * 13 5 4 15 15 C 1.53040 * 109.30943 * 54.63814 * 14 13 5 16 16 H 1.08998 * 109.46254 * 58.65341 * 15 14 13 17 17 N 1.46511 * 109.45845 * 178.62675 * 15 14 13 18 18 C 1.36934 * 119.99776 * 274.99933 * 17 15 14 19 19 H 1.07995 * 119.99894 * 359.97438 * 18 17 15 20 20 C 1.38810 * 119.99882 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99866 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47243 * 59.99528 * 22 20 18 24 24 H 1.48497 * 109.47424 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47200 * 299.99829 * 22 20 18 26 26 H 1.09007 * 109.47001 * 299.92768 * 1 2 3 27 27 H 1.09007 * 109.47522 * 59.92037 * 1 2 3 28 28 H 1.08995 * 109.47748 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.50436 * 65.67374 * 4 2 1 30 30 H 1.08997 * 109.43158 * 305.39108 * 4 2 1 31 31 H 1.09002 * 109.47060 * 299.99722 * 8 6 5 32 32 H 1.09001 * 109.47380 * 59.99809 * 8 6 5 33 33 H 1.09002 * 109.46716 * 60.00091 * 10 9 8 34 34 H 1.09000 * 109.47486 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.47362 * 300.00732 * 10 9 8 36 36 H 1.09001 * 109.47066 * 60.00169 * 11 9 8 37 37 H 1.08996 * 109.47747 * 179.97438 * 11 9 8 38 38 H 1.09002 * 109.47103 * 300.00247 * 11 9 8 39 39 H 1.08993 * 109.46955 * 60.00011 * 12 9 8 40 40 H 1.09000 * 109.47050 * 179.97438 * 12 9 8 41 41 H 1.09001 * 109.47002 * 299.99574 * 12 9 8 42 42 H 1.08998 * 109.58454 * 66.42654 * 13 5 4 43 43 H 1.09001 * 109.58711 * 186.85731 * 13 5 4 44 44 H 1.09007 * 109.49938 * 174.58337 * 14 13 5 45 45 H 1.09003 * 109.50033 * 294.65210 * 14 13 5 46 46 H 0.97000 * 119.99523 * 94.99684 * 17 15 14 47 47 H 0.97000 * 119.99776 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0415 -0.7188 -1.2471 5 7 3.5045 -0.8293 -1.1694 6 6 4.2811 -0.3858 -2.1778 7 8 3.7732 0.1055 -3.1635 8 6 5.7806 -0.5005 -2.0806 9 6 6.4191 0.0716 -3.3478 10 6 6.0286 1.5435 -3.4959 11 6 7.9414 -0.0442 -3.2489 12 6 5.9256 -0.7118 -4.5659 13 6 4.1052 -1.4268 0.0309 14 6 3.5708 -0.6950 1.2661 15 6 2.0408 -0.7231 1.2484 16 1 1.6967 -1.7572 1.2354 17 7 1.5265 -0.0525 2.4452 18 6 1.3951 -0.7488 3.6170 19 1 1.6702 -1.7922 3.6588 20 6 0.9073 -0.1136 4.7508 21 7 0.5716 1.1581 4.6996 22 14 0.7274 -1.0635 6.3491 23 1 2.0545 -1.5799 6.7701 24 1 0.1900 -0.1642 7.4016 25 1 -0.2050 -2.2014 6.1463 26 1 -0.3633 0.5127 0.8907 27 1 -0.3634 0.5151 -0.8893 28 1 -0.3634 -1.0276 -0.0005 29 1 1.7645 -0.1497 -2.1345 30 1 1.6020 -1.7150 -1.2973 31 1 6.1321 0.0574 -1.2126 32 1 6.0588 -1.5491 -1.9756 33 1 6.3802 2.1017 -2.6281 34 1 6.4831 1.9510 -4.3989 35 1 4.9441 1.6265 -3.5661 36 1 8.2199 -1.0927 -3.1432 37 1 8.3963 0.3629 -4.1518 38 1 8.2926 0.5142 -2.3811 39 1 4.8411 -0.6289 -4.6362 40 1 6.3801 -0.3040 -5.4687 41 1 6.2038 -1.7605 -4.4605 42 1 3.8374 -2.4819 0.0869 43 1 5.1895 -1.3247 -0.0136 44 1 3.9333 -1.1896 2.1673 45 1 3.9164 0.3388 1.2544 46 1 1.2791 0.8847 2.4074 47 1 0.2311 1.6020 5.4920 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035907290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:13 Heat of formation + Delta-G solvation = -61.182311 kcal Electronic energy + Delta-G solvation = -23573.232128 eV Core-core repulsion = 20368.744949 eV Total energy + Delta-G solvation = -3204.487179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.49080 -39.45194 -37.29934 -36.09213 -34.48023 -33.04024 -31.05736 -29.76621 -28.06264 -27.98155 -27.26847 -26.38035 -24.31221 -23.05439 -21.45008 -20.48350 -19.36425 -19.00650 -18.09008 -16.80431 -16.75141 -16.48648 -15.73749 -15.50241 -15.29223 -15.20829 -15.16649 -14.88060 -14.45663 -14.07266 -13.82292 -13.52480 -13.13621 -13.02140 -12.94272 -12.88143 -12.81000 -12.72861 -12.62103 -12.44020 -12.19652 -12.16813 -12.07920 -11.88097 -11.81111 -11.62540 -11.52975 -11.49566 -11.13500 -10.85125 -10.34974 -9.55434 -8.95530 -7.90272 -5.17952 1.49247 1.51346 1.57253 1.70418 2.09363 2.58921 3.42840 3.58272 3.78311 3.81286 3.90153 3.97870 4.04873 4.12256 4.26493 4.34755 4.42071 4.53232 4.63011 4.66837 4.67914 4.69762 4.81252 4.83579 4.85722 4.88193 4.90072 4.99532 5.02051 5.03543 5.12063 5.20143 5.21176 5.29267 5.33627 5.40462 5.41930 5.52644 5.57327 5.57766 5.63854 5.73240 6.31004 6.53014 7.28875 7.37471 8.13951 8.37117 9.33201 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028869 B = 0.003708 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.678394 B = 7548.460180 C = 7976.310597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.099 4.099 3 H 0.049 0.951 4 C 0.128 3.872 5 N -0.611 5.611 6 C 0.510 3.490 7 O -0.567 6.567 8 C -0.129 4.129 9 C -0.052 4.052 10 C -0.152 4.152 11 C -0.137 4.137 12 C -0.149 4.149 13 C 0.115 3.885 14 C -0.143 4.143 15 C 0.179 3.821 16 H 0.047 0.953 17 N -0.733 5.733 18 C -0.232 4.232 19 H 0.078 0.922 20 C -0.077 4.077 21 N -0.972 5.972 22 Si 0.968 3.032 23 H -0.277 1.277 24 H -0.301 1.301 25 H -0.279 1.279 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.044 0.956 46 H 0.370 0.630 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.916 -6.244 -15.956 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.120 4.120 3 H 0.068 0.932 4 C 0.004 3.996 5 N -0.343 5.343 6 C 0.300 3.700 7 O -0.448 6.448 8 C -0.169 4.169 9 C -0.053 4.053 10 C -0.209 4.209 11 C -0.194 4.194 12 C -0.206 4.206 13 C -0.008 4.008 14 C -0.184 4.184 15 C 0.070 3.930 16 H 0.065 0.935 17 N -0.372 5.372 18 C -0.364 4.364 19 H 0.096 0.904 20 C -0.268 4.268 21 N -0.623 5.623 22 Si 0.798 3.202 23 H -0.203 1.203 24 H -0.228 1.228 25 H -0.205 1.205 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.133 0.867 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.127 0.873 44 H 0.085 0.915 45 H 0.063 0.937 46 H 0.201 0.799 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.650 -6.153 -16.341 21.562 hybrid contribution -0.648 0.415 1.354 1.557 sum 12.002 -5.738 -14.987 20.040 Atomic orbital electron populations 1.21572 0.94180 1.01930 1.01082 1.21520 0.96515 0.99031 0.94892 0.93204 1.21421 0.79796 1.00913 0.97425 1.48313 1.06711 1.60577 1.18747 1.21236 0.90722 0.76324 0.81673 1.90548 1.76363 1.45831 1.32018 1.21888 0.89507 1.04871 1.00598 1.20301 0.95864 0.95304 0.93796 1.22066 1.02432 0.95384 1.01047 1.21849 0.92762 1.02562 1.02254 1.22037 1.02299 0.99324 0.96948 1.21888 0.99268 0.97345 0.82282 1.22478 0.98150 1.00072 0.97715 1.20436 0.91951 0.95196 0.85396 0.93518 1.42600 1.76971 1.10807 1.06772 1.19571 1.33851 0.94422 0.88536 0.90421 1.25491 1.03139 0.96898 1.01320 1.69819 1.52023 1.11132 1.29329 0.85282 0.77937 0.77329 0.79646 1.20324 1.22763 1.20540 0.94200 0.91846 0.92353 0.90002 0.90392 0.87863 0.86691 0.93309 0.92710 0.92476 0.91458 0.92195 0.92126 0.92336 0.92862 0.92469 0.89787 0.87278 0.91504 0.93725 0.79876 0.94290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 9.03 71.98 0.65 -3.60 16 2 C -0.10 -3.25 2.44 -10.86 -0.03 -3.28 16 3 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 4 C 0.13 3.51 5.69 86.22 0.49 4.00 16 5 N -0.61 -15.37 2.98 -819.74 -2.44 -17.82 16 6 C 0.51 12.87 7.11 87.66 0.62 13.49 16 7 O -0.57 -17.65 10.76 -3.03 -0.03 -17.68 16 8 C -0.13 -2.31 3.12 29.85 0.09 -2.21 16 9 C -0.05 -0.95 0.77 -52.18 -0.04 -0.99 16 10 C -0.15 -3.30 8.17 71.98 0.59 -2.71 16 11 C -0.14 -1.83 8.47 71.98 0.61 -1.22 16 12 C -0.15 -2.91 8.18 71.98 0.59 -2.32 16 13 C 0.11 2.53 6.34 86.36 0.55 3.08 16 14 C -0.14 -4.47 5.66 30.67 0.17 -4.30 16 15 C 0.18 6.58 2.20 45.02 0.10 6.68 16 16 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 17 N -0.73 -35.45 4.41 -322.79 -1.42 -36.87 16 18 C -0.23 -12.35 9.93 84.03 0.83 -11.52 16 19 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 20 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 21 N -0.97 -59.00 13.06 21.65 0.28 -58.72 16 22 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H 0.04 1.57 7.36 -2.38 -0.02 1.55 16 27 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 29 H 0.08 2.39 7.01 -2.39 -0.02 2.37 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.10 1.66 7.69 -2.39 -0.02 1.64 16 32 H 0.11 1.51 7.94 -2.39 -0.02 1.49 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.58 5.51 -2.39 -0.01 1.57 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 1.48 5.51 -2.39 -0.01 1.47 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.11 1.76 5.93 -2.39 -0.01 1.75 16 44 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 45 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.37 19.80 7.51 -92.71 -0.70 19.10 16 47 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -64.87 357.35 4.34 -60.53 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.23 Total: 31.99 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 5.70 Total: -8.73 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -3.58 Total: -113.41 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.03 Total: -17.68 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -64.87 4.34 -60.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035907290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.654 kcal (2) G-P(sol) polarization free energy of solvation -64.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds