Wall clock time and date at job start Tue Mar 31 2020 06:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.58369 * 2 1 4 4 C 1.53162 * 109.58698 * 239.57002 * 2 1 3 5 5 C 1.53041 * 109.32649 * 185.56955 * 4 2 1 6 6 H 1.08997 * 109.46062 * 181.38433 * 5 4 2 7 7 N 1.46498 * 109.45945 * 301.35777 * 5 4 2 8 8 C 1.36940 * 120.00129 * 205.02422 * 7 5 4 9 9 H 1.08000 * 119.99914 * 0.02562 * 8 7 5 10 10 C 1.38810 * 120.00101 * 179.97438 * 8 7 5 11 11 N 1.31623 * 120.00016 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99927 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47248 * 90.00705 * 12 10 8 14 14 H 1.48498 * 109.47105 * 330.00346 * 12 10 8 15 15 H 1.48506 * 109.47307 * 210.00634 * 12 10 8 16 16 C 1.53044 * 109.52897 * 61.36972 * 5 4 2 17 17 C 1.53199 * 109.31162 * 298.64402 * 16 5 4 18 18 N 1.46921 * 109.58806 * 120.28189 * 2 1 3 19 19 C 1.34779 * 120.63090 * 353.42204 * 18 2 1 20 20 O 1.21276 * 120.00140 * 354.18883 * 19 18 2 21 21 C 1.50700 * 120.00097 * 174.18776 * 19 18 2 22 22 C 1.52997 * 109.47244 * 179.97438 * 21 19 18 23 23 C 1.53004 * 109.47054 * 60.00019 * 22 21 19 24 24 C 1.53004 * 109.47228 * 180.02562 * 22 21 19 25 25 C 1.52999 * 109.46865 * 300.00037 * 22 21 19 26 26 H 1.09003 * 109.46677 * 305.50012 * 1 2 3 27 27 H 1.08998 * 109.47025 * 65.49953 * 1 2 3 28 28 H 1.09001 * 109.47156 * 185.50411 * 1 2 3 29 29 H 1.08994 * 109.48336 * 65.61732 * 4 2 1 30 30 H 1.09004 * 109.50164 * 305.52539 * 4 2 1 31 31 H 0.97001 * 120.00172 * 25.02460 * 7 5 4 32 32 H 0.96993 * 119.99756 * 359.97438 * 11 10 8 33 33 H 1.09000 * 109.49920 * 58.59226 * 16 5 4 34 34 H 1.08994 * 109.50164 * 178.69195 * 16 5 4 35 35 H 1.09002 * 109.58477 * 174.42096 * 17 16 5 36 36 H 1.08996 * 109.58629 * 294.84962 * 17 16 5 37 37 H 1.09003 * 109.46848 * 300.00145 * 21 19 18 38 38 H 1.09003 * 109.47190 * 59.99499 * 21 19 18 39 39 H 1.09002 * 109.47008 * 60.00259 * 23 22 21 40 40 H 1.09000 * 109.46789 * 179.97438 * 23 22 21 41 41 H 1.08999 * 109.47105 * 299.99878 * 23 22 21 42 42 H 1.09003 * 109.47312 * 59.99509 * 24 22 21 43 43 H 1.08993 * 109.47174 * 179.97438 * 24 22 21 44 44 H 1.09003 * 109.46742 * 300.00145 * 24 22 21 45 45 H 1.08999 * 109.47374 * 60.00074 * 25 22 21 46 46 H 1.09007 * 109.46654 * 179.97438 * 25 22 21 47 47 H 1.08997 * 109.47488 * 299.99372 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2442 5 6 3.5675 -0.8493 -1.1692 6 1 3.9375 -1.3474 -2.0653 7 7 4.1570 0.4885 -1.0756 8 6 5.4411 0.7022 -1.5007 9 1 6.0191 -0.1155 -1.9053 10 6 5.9995 1.9700 -1.4125 11 7 5.2949 2.9666 -0.9199 12 14 7.7509 2.2616 -1.9930 13 1 7.7401 2.6374 -3.4296 14 1 8.5455 1.0202 -1.8120 15 1 8.3594 3.3590 -1.1988 16 6 3.9570 -1.6656 0.0654 17 6 3.4651 -0.9453 1.3249 18 7 2.0226 -0.6980 1.1953 19 6 1.1674 -1.1043 2.1545 20 8 -0.0056 -0.8034 2.0883 21 6 1.6687 -1.9324 3.3095 22 6 0.5046 -2.2566 4.2478 23 6 -0.5635 -3.0413 3.4833 24 6 1.0137 -3.0969 5.4208 25 6 -0.1005 -0.9552 4.7782 26 1 -0.3633 0.5968 0.8367 27 1 -0.3633 0.4262 -0.9351 28 1 -0.3633 -1.0229 0.0986 29 1 1.7657 -0.1694 -2.1362 30 1 1.6030 -1.7269 -1.2889 31 1 3.6378 1.2230 -0.7126 32 1 4.3854 2.8153 -0.6188 33 1 3.4984 -2.6528 0.0085 34 1 5.0412 -1.7694 0.1057 35 1 3.6520 -1.5690 2.1990 36 1 3.9903 0.0039 1.4316 37 1 2.1002 -2.8593 2.9315 38 1 2.4294 -1.3733 3.8544 39 1 -0.1324 -3.9684 3.1055 40 1 -1.3926 -3.2726 4.1520 41 1 -0.9261 -2.4422 2.6480 42 1 1.7745 -2.5375 5.9653 43 1 0.1844 -3.3274 6.0895 44 1 1.4451 -4.0240 5.0432 45 1 -0.4631 -0.3562 3.9428 46 1 -0.9302 -1.1862 5.4464 47 1 0.6603 -0.3962 5.3229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044457782.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:37 Heat of formation + Delta-G solvation = -26.254027 kcal Electronic energy + Delta-G solvation = -24219.195366 eV Core-core repulsion = 21016.222791 eV Total energy + Delta-G solvation = -3202.972575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.59425 -38.18066 -36.31314 -34.38409 -32.72373 -32.04074 -29.03021 -28.09233 -27.23007 -27.16064 -26.81001 -24.00563 -23.42637 -22.03257 -20.23581 -18.94001 -18.21732 -17.26725 -16.63928 -15.90697 -15.42179 -14.91819 -14.55912 -14.26546 -14.18137 -14.09353 -13.67412 -13.46603 -13.39771 -12.89532 -12.71236 -12.21743 -12.10680 -12.02259 -11.95155 -11.73464 -11.67867 -11.30258 -11.16791 -10.93881 -10.81554 -10.75698 -10.67816 -10.63776 -10.49778 -10.31194 -10.15674 -10.01183 -9.19473 -8.96518 -8.61877 -8.16123 -7.07324 -6.12954 -3.13556 2.84234 3.24581 3.49370 3.53607 3.67582 4.63445 4.64094 4.65337 4.80490 5.07572 5.18724 5.23589 5.34813 5.43399 5.44464 5.47108 5.54345 5.58492 5.59450 5.64317 5.67919 5.74112 5.80695 5.83661 5.87876 5.93658 6.04139 6.08048 6.09609 6.10386 6.20498 6.22147 6.35803 6.42959 6.48725 6.50448 6.62006 6.67164 6.68927 6.74752 7.02658 7.76608 7.78497 8.47422 8.72045 9.18764 10.05234 10.20556 11.34869 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025909 B = 0.004314 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.429965 B = 6489.491915 C = 6809.624009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.146 3.854 3 H 0.072 0.928 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.051 0.949 7 N -0.733 5.733 8 C -0.331 4.331 9 H 0.064 0.936 10 C -0.044 4.044 11 N -0.943 5.943 12 Si 1.081 2.919 13 H -0.296 1.296 14 H -0.295 1.295 15 H -0.288 1.288 16 C -0.148 4.148 17 C 0.114 3.886 18 N -0.600 5.600 19 C 0.515 3.485 20 O -0.536 6.536 21 C -0.134 4.134 22 C -0.050 4.050 23 C -0.152 4.152 24 C -0.142 4.142 25 C -0.153 4.153 26 H 0.076 0.924 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.366 0.634 32 H 0.254 0.746 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.086 0.914 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.584 -12.099 8.733 17.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.043 3.957 3 H 0.090 0.910 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.069 0.931 7 N -0.377 5.377 8 C -0.462 4.462 9 H 0.082 0.918 10 C -0.242 4.242 11 N -0.589 5.589 12 Si 0.912 3.088 13 H -0.224 1.224 14 H -0.222 1.222 15 H -0.215 1.215 16 C -0.190 4.190 17 C -0.008 4.008 18 N -0.333 5.333 19 C 0.304 3.696 20 O -0.415 6.415 21 C -0.174 4.174 22 C -0.050 4.050 23 C -0.209 4.209 24 C -0.199 4.199 25 C -0.210 4.210 26 H 0.095 0.905 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.201 0.799 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.104 0.896 46 H 0.066 0.934 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.839 -10.946 8.413 15.876 hybrid contribution -0.967 -1.091 0.261 1.481 sum -8.806 -12.037 8.674 17.253 Atomic orbital electron populations 1.22189 0.93105 1.03041 1.00723 1.21186 0.94919 0.95670 0.83907 0.91005 1.22249 0.97384 1.00298 0.97378 1.20120 0.90273 0.87680 0.95039 0.93134 1.42516 1.14067 1.04754 1.76346 1.20062 0.90504 0.96999 1.38615 0.91768 1.25722 1.06049 0.91556 1.00823 1.70862 1.10982 1.32374 1.44651 0.83214 0.74499 0.75098 0.75972 1.22387 1.22197 1.21457 1.22490 1.01426 0.97913 0.97127 1.21703 0.79371 1.01512 0.98217 1.48245 1.07735 1.57129 1.20185 1.20544 0.85976 0.79912 0.83192 1.90578 1.17195 1.57192 1.76576 1.21837 0.99485 1.00434 0.95598 1.20251 0.94376 0.96196 0.94205 1.22100 0.97821 0.99459 1.01505 1.21903 1.00914 0.99477 0.97638 1.22102 0.99987 0.96942 1.01937 0.90513 0.94211 0.92107 0.90947 0.92028 0.79908 0.93464 0.93248 0.90841 0.91025 0.90203 0.89343 0.89322 0.93820 0.93431 0.89566 0.92760 0.92591 0.92828 0.89568 0.93420 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 7.61 37.16 0.28 -1.78 16 2 C 0.15 2.42 3.19 -67.62 -0.22 2.20 16 3 H 0.07 1.35 6.65 -51.93 -0.35 1.01 16 4 C -0.13 -2.21 5.07 -26.63 -0.13 -2.35 16 5 C 0.18 3.39 3.10 -67.89 -0.21 3.18 16 6 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 7 N -0.73 -17.20 4.31 -53.38 -0.23 -17.43 16 8 C -0.33 -8.86 9.93 -15.06 -0.15 -9.01 16 9 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 10 C -0.04 -1.23 5.50 -17.43 -0.10 -1.33 16 11 N -0.94 -28.45 13.70 55.49 0.76 -27.69 16 12 Si 1.08 25.37 29.92 -169.99 -5.09 20.29 16 13 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 16 C -0.15 -2.44 5.78 -26.61 -0.15 -2.59 16 17 C 0.11 1.78 6.09 -3.71 -0.02 1.76 16 18 N -0.60 -9.29 2.97 -165.24 -0.49 -9.78 16 19 C 0.51 7.47 6.91 -10.98 -0.08 7.39 16 20 O -0.54 -8.47 6.92 5.56 0.04 -8.43 16 21 C -0.13 -1.55 3.12 -27.88 -0.09 -1.64 16 22 C -0.05 -0.55 0.77 -154.51 -0.12 -0.66 16 23 C -0.15 -1.73 8.18 37.16 0.30 -1.42 16 24 C -0.14 -1.29 8.47 37.16 0.31 -0.97 16 25 C -0.15 -1.80 8.17 37.16 0.30 -1.50 16 26 H 0.08 1.26 6.54 -51.93 -0.34 0.93 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.95 6.96 -51.93 -0.36 0.59 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.37 9.00 4.90 -40.82 -0.20 8.80 16 32 H 0.25 7.58 6.77 -40.82 -0.28 7.30 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.07 0.91 5.93 -51.93 -0.31 0.60 16 36 H 0.08 1.49 7.74 -51.93 -0.40 1.09 16 37 H 0.09 0.93 7.93 -51.93 -0.41 0.52 16 38 H 0.09 0.97 7.71 -51.93 -0.40 0.57 16 39 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.09 1.17 5.51 -51.93 -0.29 0.88 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 1.21 5.51 -51.93 -0.29 0.93 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -29.27 346.78 -8.16 -37.43 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -8.32 Total: 9.10 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -0.06 Total: -8.70 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.04 Total: -54.91 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.04 Total: -8.43 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.09 Total: 20.29 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.27 -8.16 -37.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044457782.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.172 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds