Wall clock time and date at job start Tue Mar 31 2020 06:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.58369 * 2 1 4 4 C 1.53162 * 109.58698 * 239.57002 * 2 1 3 5 5 C 1.53041 * 109.32649 * 185.56955 * 4 2 1 6 6 H 1.08997 * 109.46062 * 181.38433 * 5 4 2 7 7 N 1.46498 * 109.45945 * 301.35777 * 5 4 2 8 8 C 1.36940 * 120.00129 * 205.02422 * 7 5 4 9 9 H 1.08000 * 119.99914 * 0.02562 * 8 7 5 10 10 C 1.38810 * 120.00101 * 179.97438 * 8 7 5 11 11 N 1.31623 * 120.00016 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99927 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47248 * 90.00705 * 12 10 8 14 14 H 1.48498 * 109.47105 * 330.00346 * 12 10 8 15 15 H 1.48506 * 109.47307 * 210.00634 * 12 10 8 16 16 C 1.53044 * 109.52897 * 61.36972 * 5 4 2 17 17 C 1.53199 * 109.31162 * 298.64402 * 16 5 4 18 18 N 1.46921 * 109.58806 * 120.28189 * 2 1 3 19 19 C 1.34779 * 120.63090 * 353.42204 * 18 2 1 20 20 O 1.21276 * 120.00140 * 354.18883 * 19 18 2 21 21 C 1.50700 * 120.00097 * 174.18776 * 19 18 2 22 22 C 1.52997 * 109.47244 * 179.97438 * 21 19 18 23 23 C 1.53004 * 109.47054 * 60.00019 * 22 21 19 24 24 C 1.53004 * 109.47228 * 180.02562 * 22 21 19 25 25 C 1.52999 * 109.46865 * 300.00037 * 22 21 19 26 26 H 1.09003 * 109.46677 * 305.50012 * 1 2 3 27 27 H 1.08998 * 109.47025 * 65.49953 * 1 2 3 28 28 H 1.09001 * 109.47156 * 185.50411 * 1 2 3 29 29 H 1.08994 * 109.48336 * 65.61732 * 4 2 1 30 30 H 1.09004 * 109.50164 * 305.52539 * 4 2 1 31 31 H 0.97001 * 120.00172 * 25.02460 * 7 5 4 32 32 H 0.96993 * 119.99756 * 359.97438 * 11 10 8 33 33 H 1.09000 * 109.49920 * 58.59226 * 16 5 4 34 34 H 1.08994 * 109.50164 * 178.69195 * 16 5 4 35 35 H 1.09002 * 109.58477 * 174.42096 * 17 16 5 36 36 H 1.08996 * 109.58629 * 294.84962 * 17 16 5 37 37 H 1.09003 * 109.46848 * 300.00145 * 21 19 18 38 38 H 1.09003 * 109.47190 * 59.99499 * 21 19 18 39 39 H 1.09002 * 109.47008 * 60.00259 * 23 22 21 40 40 H 1.09000 * 109.46789 * 179.97438 * 23 22 21 41 41 H 1.08999 * 109.47105 * 299.99878 * 23 22 21 42 42 H 1.09003 * 109.47312 * 59.99509 * 24 22 21 43 43 H 1.08993 * 109.47174 * 179.97438 * 24 22 21 44 44 H 1.09003 * 109.46742 * 300.00145 * 24 22 21 45 45 H 1.08999 * 109.47374 * 60.00074 * 25 22 21 46 46 H 1.09007 * 109.46654 * 179.97438 * 25 22 21 47 47 H 1.08997 * 109.47488 * 299.99372 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2442 5 6 3.5675 -0.8493 -1.1692 6 1 3.9375 -1.3474 -2.0653 7 7 4.1570 0.4885 -1.0756 8 6 5.4411 0.7022 -1.5007 9 1 6.0191 -0.1155 -1.9053 10 6 5.9995 1.9700 -1.4125 11 7 5.2949 2.9666 -0.9199 12 14 7.7509 2.2616 -1.9930 13 1 7.7401 2.6374 -3.4296 14 1 8.5455 1.0202 -1.8120 15 1 8.3594 3.3590 -1.1988 16 6 3.9570 -1.6656 0.0654 17 6 3.4651 -0.9453 1.3249 18 7 2.0226 -0.6980 1.1953 19 6 1.1674 -1.1043 2.1545 20 8 -0.0056 -0.8034 2.0883 21 6 1.6687 -1.9324 3.3095 22 6 0.5046 -2.2566 4.2478 23 6 -0.5635 -3.0413 3.4833 24 6 1.0137 -3.0969 5.4208 25 6 -0.1005 -0.9552 4.7782 26 1 -0.3633 0.5968 0.8367 27 1 -0.3633 0.4262 -0.9351 28 1 -0.3633 -1.0229 0.0986 29 1 1.7657 -0.1694 -2.1362 30 1 1.6030 -1.7269 -1.2889 31 1 3.6378 1.2230 -0.7126 32 1 4.3854 2.8153 -0.6188 33 1 3.4984 -2.6528 0.0085 34 1 5.0412 -1.7694 0.1057 35 1 3.6520 -1.5690 2.1990 36 1 3.9903 0.0039 1.4316 37 1 2.1002 -2.8593 2.9315 38 1 2.4294 -1.3733 3.8544 39 1 -0.1324 -3.9684 3.1055 40 1 -1.3926 -3.2726 4.1520 41 1 -0.9261 -2.4422 2.6480 42 1 1.7745 -2.5375 5.9653 43 1 0.1844 -3.3274 6.0895 44 1 1.4451 -4.0240 5.0432 45 1 -0.4631 -0.3562 3.9428 46 1 -0.9302 -1.1862 5.4464 47 1 0.6603 -0.3962 5.3229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044457782.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:37 Heat of formation + Delta-G solvation = -42.048839 kcal Electronic energy + Delta-G solvation = -24219.880280 eV Core-core repulsion = 21016.222791 eV Total energy + Delta-G solvation = -3203.657490 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.79196 -39.44349 -37.41530 -36.04196 -34.10486 -33.66866 -30.69124 -29.27317 -28.13058 -28.05962 -27.99084 -25.57299 -25.26016 -23.29973 -21.55639 -20.13444 -19.48424 -19.09295 -17.80920 -17.22571 -16.84219 -16.35185 -15.81963 -15.52014 -15.39303 -15.30094 -15.21247 -14.83615 -14.66384 -14.36133 -13.71143 -13.41090 -13.37523 -13.22286 -12.94092 -12.87503 -12.72955 -12.66074 -12.59696 -12.34265 -12.12279 -12.02272 -11.95316 -11.83081 -11.73875 -11.59371 -11.53493 -11.50825 -11.15409 -10.89182 -9.79291 -9.47968 -9.06039 -8.33669 -5.27318 1.60048 1.69861 1.70546 1.83598 2.03836 2.73776 3.44578 3.55480 3.72160 3.76844 3.91786 3.93777 3.96108 4.01150 4.19398 4.27436 4.31929 4.43787 4.56680 4.61580 4.64617 4.66789 4.70853 4.80624 4.85117 4.86267 4.88918 4.99373 5.00637 5.04383 5.10641 5.18443 5.19751 5.20683 5.27067 5.28876 5.35319 5.40286 5.56974 5.64654 5.66770 5.73987 6.53090 6.57821 7.13674 7.31130 8.04695 8.16979 9.17653 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025909 B = 0.004314 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.429965 B = 6489.491915 C = 6809.624009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.147 3.853 3 H 0.040 0.960 4 C -0.122 4.122 5 C 0.170 3.830 6 H 0.043 0.957 7 N -0.743 5.743 8 C -0.320 4.320 9 H 0.067 0.933 10 C -0.105 4.105 11 N -0.979 5.979 12 Si 1.127 2.873 13 H -0.290 1.290 14 H -0.271 1.271 15 H -0.297 1.297 16 C -0.139 4.139 17 C 0.122 3.878 18 N -0.604 5.604 19 C 0.509 3.491 20 O -0.549 6.549 21 C -0.130 4.130 22 C -0.049 4.049 23 C -0.148 4.148 24 C -0.137 4.137 25 C -0.151 4.151 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.358 0.642 32 H 0.241 0.759 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.042 0.958 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.289 -14.664 9.563 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.044 3.956 3 H 0.058 0.942 4 C -0.161 4.161 5 C 0.062 3.938 6 H 0.061 0.939 7 N -0.386 5.386 8 C -0.452 4.452 9 H 0.085 0.915 10 C -0.296 4.296 11 N -0.627 5.627 12 Si 0.953 3.047 13 H -0.217 1.217 14 H -0.196 1.196 15 H -0.224 1.224 16 C -0.179 4.179 17 C -0.001 4.001 18 N -0.337 5.337 19 C 0.300 3.700 20 O -0.429 6.429 21 C -0.170 4.170 22 C -0.050 4.050 23 C -0.205 4.205 24 C -0.194 4.194 25 C -0.208 4.208 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.191 0.809 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.126 0.874 36 H 0.060 0.940 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.572 -13.577 9.247 18.088 hybrid contribution -1.165 -0.344 0.006 1.214 sum -8.736 -13.921 9.253 18.861 Atomic orbital electron populations 1.22020 0.92112 1.02800 1.00571 1.21039 0.95495 0.94287 0.84801 0.94212 1.22119 0.95618 1.01353 0.96994 1.20381 0.91632 0.85784 0.96040 0.93873 1.42676 1.13238 1.06447 1.76223 1.20381 0.91606 0.96752 1.36446 0.91479 1.27023 1.09193 0.91837 1.01536 1.70976 1.10818 1.33461 1.47476 0.82617 0.70961 0.75614 0.75548 1.21690 1.19627 1.22414 1.22338 1.00953 0.98815 0.95831 1.21600 0.79028 1.00147 0.99310 1.48270 1.07822 1.57381 1.20204 1.21144 0.85692 0.79766 0.83411 1.90597 1.17922 1.57550 1.76812 1.21902 0.99972 1.00700 0.94386 1.20272 0.94010 0.95896 0.94779 1.22036 0.98259 0.99420 1.00830 1.21853 1.01293 0.99534 0.96769 1.22057 1.00408 0.97265 1.01075 0.91895 0.93404 0.91956 0.91708 0.89730 0.80870 0.94862 0.90201 0.91941 0.87439 0.93963 0.87332 0.88355 0.92818 0.92785 0.92018 0.92211 0.92026 0.91704 0.92235 0.92626 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.61 7.61 71.98 0.55 -3.07 16 2 C 0.15 4.90 3.19 44.97 0.14 5.04 16 3 H 0.04 1.58 6.65 -2.39 -0.02 1.56 16 4 C -0.12 -3.93 5.07 30.66 0.16 -3.77 16 5 C 0.17 6.33 3.10 45.02 0.14 6.47 16 6 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 7 N -0.74 -35.46 4.31 -322.81 -1.39 -36.85 16 8 C -0.32 -17.24 9.93 84.03 0.83 -16.41 16 9 H 0.07 3.52 7.83 -2.91 -0.02 3.50 16 10 C -0.10 -5.95 5.50 84.86 0.47 -5.48 16 11 N -0.98 -60.72 13.70 21.65 0.30 -60.42 16 12 Si 1.13 51.27 29.92 68.60 2.05 53.32 16 13 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 14 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 15 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 16 C -0.14 -4.29 5.78 30.68 0.18 -4.12 16 17 C 0.12 3.63 6.09 86.36 0.53 4.15 16 18 N -0.60 -18.12 2.97 -795.08 -2.36 -20.49 16 19 C 0.51 14.06 6.91 87.66 0.61 14.67 16 20 O -0.55 -17.06 6.92 -3.02 -0.02 -17.08 16 21 C -0.13 -2.64 3.12 29.85 0.09 -2.55 16 22 C -0.05 -0.95 0.77 -52.18 -0.04 -0.99 16 23 C -0.15 -3.05 8.18 71.98 0.59 -2.46 16 24 C -0.14 -2.01 8.47 71.98 0.61 -1.40 16 25 C -0.15 -3.36 8.17 71.98 0.59 -2.77 16 26 H 0.06 2.11 6.54 -2.39 -0.02 2.09 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.89 6.96 -2.39 -0.02 1.87 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.36 18.33 4.90 -92.71 -0.45 17.87 16 32 H 0.24 15.03 6.77 -92.71 -0.63 14.40 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.11 2.41 5.93 -2.39 -0.01 2.40 16 36 H 0.04 1.59 7.74 -2.39 -0.02 1.57 16 37 H 0.11 1.82 7.93 -2.39 -0.02 1.80 16 38 H 0.10 1.85 7.71 -2.39 -0.02 1.84 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.59 5.51 -2.39 -0.01 1.58 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.06 1.66 5.51 -2.39 -0.01 1.65 16 46 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 47 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -64.33 346.78 4.63 -59.69 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: 0.62 Total: 34.52 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 5.44 Total: -12.69 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -3.46 Total: -117.76 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.02 Total: -17.08 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.05 Total: 53.32 kcal Total: -64.33 4.63 -59.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044457782.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.646 kcal (2) G-P(sol) polarization free energy of solvation -64.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds