Wall clock time and date at job start Tue Mar 31 2020 06:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.59027 * 2 1 4 4 C 1.53191 * 109.70291 * 120.35909 * 2 1 3 5 5 C 1.53040 * 109.31548 * 65.21909 * 4 2 1 6 6 H 1.08995 * 109.44768 * 301.35055 * 5 4 2 7 7 N 1.46499 * 109.45956 * 181.38275 * 5 4 2 8 8 C 1.36935 * 119.99926 * 154.93425 * 7 5 4 9 9 H 1.08005 * 119.99877 * 359.97438 * 8 7 5 10 10 C 1.38811 * 120.00369 * 179.73019 * 8 7 5 11 11 N 1.31617 * 119.99773 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00451 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47050 * 59.99408 * 12 10 8 14 14 H 1.48496 * 109.47289 * 179.97438 * 12 10 8 15 15 H 1.48508 * 109.46855 * 299.99389 * 12 10 8 16 16 C 1.53042 * 109.53730 * 61.36617 * 5 4 2 17 17 C 1.53191 * 109.31376 * 298.63705 * 16 5 4 18 18 N 1.46925 * 108.77723 * 54.63089 * 17 16 5 19 19 C 1.34775 * 120.62961 * 126.37170 * 18 17 16 20 20 O 1.21285 * 119.99991 * 180.02562 * 19 18 17 21 21 C 1.50703 * 119.99992 * 0.02562 * 19 18 17 22 22 C 1.52994 * 109.46889 * 180.02562 * 21 19 18 23 23 C 1.52994 * 109.47688 * 60.00014 * 22 21 19 24 24 C 1.53000 * 109.47264 * 180.02562 * 22 21 19 25 25 C 1.53000 * 109.47280 * 299.99850 * 22 21 19 26 26 H 1.09002 * 109.47458 * 180.28507 * 1 2 3 27 27 H 1.09003 * 109.47224 * 300.28211 * 1 2 3 28 28 H 1.08997 * 109.47272 * 60.28187 * 1 2 3 29 29 H 1.08999 * 109.49978 * 305.26312 * 4 2 1 30 30 H 1.09006 * 109.49488 * 185.17233 * 4 2 1 31 31 H 0.97005 * 120.00261 * 334.93550 * 7 5 4 32 32 H 0.97004 * 120.00382 * 180.02562 * 11 10 8 33 33 H 1.09007 * 109.49843 * 58.58325 * 16 5 4 34 34 H 1.08998 * 109.49619 * 178.68270 * 16 5 4 35 35 H 1.08999 * 109.59033 * 174.42689 * 17 16 5 36 36 H 1.09005 * 109.58200 * 294.84863 * 17 16 5 37 37 H 1.09000 * 109.46898 * 299.99609 * 21 19 18 38 38 H 1.08999 * 109.47040 * 60.00053 * 21 19 18 39 39 H 1.09000 * 109.47346 * 59.99706 * 23 22 21 40 40 H 1.08995 * 109.47713 * 179.97438 * 23 22 21 41 41 H 1.09007 * 109.47139 * 300.00317 * 23 22 21 42 42 H 1.09005 * 109.47355 * 59.99236 * 24 22 21 43 43 H 1.09000 * 109.48025 * 179.97438 * 24 22 21 44 44 H 1.09004 * 109.47290 * 300.00221 * 24 22 21 45 45 H 1.08994 * 109.46911 * 60.00118 * 25 22 21 46 46 H 1.09006 * 109.47504 * 180.02562 * 25 22 21 47 47 H 1.08999 * 109.47186 * 300.00354 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 1.2445 5 6 1.6472 -2.2044 1.1691 6 1 0.5624 -2.2837 1.0994 7 7 2.1110 -2.8977 2.3734 8 6 1.4756 -4.0345 2.7965 9 1 0.6323 -4.4198 2.2426 10 6 1.9185 -4.6946 3.9345 11 7 2.9495 -4.2280 4.6066 12 14 1.0522 -6.2458 4.5113 13 1 1.1247 -7.2783 3.4465 14 1 1.7137 -6.7546 5.7395 15 1 -0.3704 -5.9377 4.8061 16 6 2.2856 -2.8449 -0.0656 17 6 1.7719 -2.1400 -1.3249 18 7 2.0225 -0.6981 -1.1954 19 6 2.6919 -0.0285 -2.1546 20 8 2.8928 1.1616 -2.0357 21 6 3.1907 -0.7587 -3.3749 22 6 3.9117 0.2250 -4.2985 23 6 5.0964 0.8469 -3.5566 24 6 4.4176 -0.5161 -5.5378 25 6 2.9414 1.3283 -4.7255 26 1 -0.3634 -1.0276 0.0051 27 1 -0.3634 0.5182 0.8875 28 1 -0.3634 0.5094 -0.8925 29 1 1.6107 -0.2792 2.1366 30 1 3.1326 -0.6477 1.2891 31 1 2.8682 -2.5514 2.8712 32 1 3.2593 -4.6895 5.4016 33 1 3.3695 -2.7437 -0.0086 34 1 2.0199 -3.9012 -0.1059 35 1 2.2968 -2.5251 -2.1992 36 1 0.7016 -2.3167 -1.4316 37 1 3.8823 -1.5444 -3.0707 38 1 2.3468 -1.2021 -3.9033 39 1 5.7876 0.0609 -3.2523 40 1 5.6102 1.5474 -4.2147 41 1 4.7356 1.3750 -2.6738 42 1 3.5733 -0.9588 -6.0663 43 1 4.9308 0.1848 -6.1962 44 1 5.1087 -1.3024 -5.2340 45 1 2.5806 1.8564 -3.8429 46 1 3.4549 2.0290 -5.3840 47 1 2.0974 0.8854 -5.2542 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044457783.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:40 Heat of formation + Delta-G solvation = -43.071425 kcal Electronic energy + Delta-G solvation = -23657.037528 eV Core-core repulsion = 20453.335696 eV Total energy + Delta-G solvation = -3203.701832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.49415 -38.27009 -36.23583 -34.52123 -32.59547 -31.80891 -29.46867 -28.12922 -27.30940 -27.21102 -27.19407 -24.17009 -22.97024 -21.93810 -20.59740 -18.86706 -18.16588 -17.20666 -16.97037 -15.66780 -15.45380 -14.94307 -14.50241 -14.42592 -14.17513 -14.02310 -13.53835 -13.47287 -13.27595 -12.78915 -12.76699 -12.63197 -12.22680 -12.13583 -11.81722 -11.77622 -11.63874 -11.32459 -11.24091 -11.06223 -10.92667 -10.87452 -10.76706 -10.72658 -10.67892 -10.41801 -10.24154 -9.75002 -9.62033 -9.28826 -8.91473 -8.41242 -6.99560 -5.79249 -3.08537 2.75088 3.12574 3.41230 3.45870 3.47050 4.53510 4.56552 4.60075 4.75615 4.99592 5.10575 5.22181 5.25353 5.34400 5.39511 5.41885 5.46787 5.49747 5.54593 5.58728 5.64284 5.70120 5.77167 5.80167 5.82755 5.85192 5.91484 6.03656 6.06299 6.08265 6.15501 6.19476 6.29689 6.39168 6.44853 6.45946 6.52882 6.56164 6.68366 6.92249 7.04558 7.61158 7.65733 8.34814 8.39028 9.50066 10.07989 10.42523 11.43231 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028700 B = 0.003702 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.386879 B = 7562.005922 C = 7876.546591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.094 0.906 4 C -0.133 4.133 5 C 0.179 3.821 6 H 0.050 0.950 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.069 0.931 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.151 4.151 17 C 0.106 3.894 18 N -0.602 5.602 19 C 0.516 3.484 20 O -0.542 6.542 21 C -0.132 4.132 22 C -0.051 4.051 23 C -0.153 4.153 24 C -0.142 4.142 25 C -0.152 4.152 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.383 0.617 32 H 0.256 0.744 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.085 0.915 46 H 0.048 0.952 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 8.053 -18.102 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.037 3.963 3 H 0.113 0.887 4 C -0.172 4.172 5 C 0.069 3.931 6 H 0.068 0.932 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.087 0.913 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.192 4.192 17 C -0.018 4.018 18 N -0.334 5.334 19 C 0.305 3.695 20 O -0.421 6.421 21 C -0.172 4.172 22 C -0.052 4.052 23 C -0.210 4.210 24 C -0.199 4.199 25 C -0.209 4.209 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.217 0.783 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.103 0.897 46 H 0.067 0.933 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.742 8.514 -17.966 19.896 hybrid contribution -0.141 -1.112 0.511 1.232 sum -0.883 7.402 -17.455 18.980 Atomic orbital electron populations 1.22130 0.95199 1.02671 1.01775 1.21155 0.93888 0.97130 0.84079 0.88746 1.22204 1.01271 0.97216 0.96496 1.20188 0.96731 0.89170 0.87016 0.93166 1.42435 1.37936 1.29257 1.26822 1.19181 1.10168 1.01070 1.06775 0.91258 1.24742 0.98411 0.99435 0.98256 1.69651 1.27189 1.41359 1.19850 0.86290 0.78821 0.83256 0.77937 1.21287 1.21714 1.21260 1.22676 1.01193 1.00465 0.94913 1.21847 1.00833 0.79477 0.99596 1.48307 1.55276 1.09460 1.20407 1.20608 0.77330 0.87464 0.84064 1.90532 1.57498 1.15394 1.78677 1.21811 1.01489 0.99285 0.94612 1.20266 0.95891 0.94829 0.94179 1.22103 0.96517 1.00553 1.01861 1.21902 1.00852 1.00086 0.97092 1.22098 0.98139 0.98204 1.02474 0.91739 0.91463 0.92974 0.90689 0.91937 0.78298 0.93436 0.92244 0.90738 0.90521 0.91570 0.88990 0.89232 0.93572 0.93326 0.89641 0.92802 0.92538 0.92683 0.89672 0.93329 0.93755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.03 37.16 0.34 -1.70 16 2 C 0.14 2.01 3.20 -67.60 -0.22 1.80 16 3 H 0.09 1.43 7.00 -51.93 -0.36 1.06 16 4 C -0.13 -2.20 5.03 -26.61 -0.13 -2.33 16 5 C 0.18 3.35 2.53 -67.89 -0.17 3.18 16 6 H 0.05 0.96 6.44 -51.93 -0.33 0.62 16 7 N -0.72 -17.59 5.12 -53.39 -0.27 -17.87 16 8 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 9 H 0.07 1.80 7.83 -52.48 -0.41 1.38 16 10 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 11 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 12 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 17 C 0.11 1.33 5.93 -3.71 -0.02 1.31 16 18 N -0.60 -8.13 2.68 -165.22 -0.44 -8.57 16 19 C 0.52 6.97 7.11 -10.98 -0.08 6.89 16 20 O -0.54 -8.55 10.76 5.55 0.06 -8.49 16 21 C -0.13 -1.39 3.12 -27.88 -0.09 -1.48 16 22 C -0.05 -0.53 0.77 -154.51 -0.12 -0.65 16 23 C -0.15 -1.75 8.18 37.15 0.30 -1.45 16 24 C -0.14 -1.19 8.47 37.16 0.31 -0.88 16 25 C -0.15 -1.64 8.17 37.16 0.30 -1.33 16 26 H 0.06 0.84 5.74 -51.93 -0.30 0.54 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 36 H 0.07 0.78 7.50 -51.93 -0.39 0.39 16 37 H 0.09 0.91 7.69 -51.93 -0.40 0.51 16 38 H 0.09 0.80 7.94 -51.93 -0.41 0.39 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 1.18 5.51 -51.92 -0.29 0.90 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 1.12 5.51 -51.93 -0.29 0.83 16 46 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 354.18 15.07 5.34 5.34 Total: -1.00 -29.82 354.18 -8.02 -37.84 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -8.44 Total: 8.23 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 0.04 Total: -6.32 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.01 Total: -53.53 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.06 Total: -8.49 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.82 -8.02 -37.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044457783.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.227 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds