Wall clock time and date at job start Tue Mar 31 2020 06:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.59027 * 2 1 4 4 C 1.53191 * 109.70291 * 120.35909 * 2 1 3 5 5 C 1.53040 * 109.31548 * 65.21909 * 4 2 1 6 6 H 1.08995 * 109.44768 * 301.35055 * 5 4 2 7 7 N 1.46499 * 109.45956 * 181.38275 * 5 4 2 8 8 C 1.36935 * 119.99926 * 154.93425 * 7 5 4 9 9 H 1.08005 * 119.99877 * 359.97438 * 8 7 5 10 10 C 1.38811 * 120.00369 * 179.73019 * 8 7 5 11 11 N 1.31617 * 119.99773 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00451 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47050 * 59.99408 * 12 10 8 14 14 H 1.48496 * 109.47289 * 179.97438 * 12 10 8 15 15 H 1.48508 * 109.46855 * 299.99389 * 12 10 8 16 16 C 1.53042 * 109.53730 * 61.36617 * 5 4 2 17 17 C 1.53191 * 109.31376 * 298.63705 * 16 5 4 18 18 N 1.46925 * 108.77723 * 54.63089 * 17 16 5 19 19 C 1.34775 * 120.62961 * 126.37170 * 18 17 16 20 20 O 1.21285 * 119.99991 * 180.02562 * 19 18 17 21 21 C 1.50703 * 119.99992 * 0.02562 * 19 18 17 22 22 C 1.52994 * 109.46889 * 180.02562 * 21 19 18 23 23 C 1.52994 * 109.47688 * 60.00014 * 22 21 19 24 24 C 1.53000 * 109.47264 * 180.02562 * 22 21 19 25 25 C 1.53000 * 109.47280 * 299.99850 * 22 21 19 26 26 H 1.09002 * 109.47458 * 180.28507 * 1 2 3 27 27 H 1.09003 * 109.47224 * 300.28211 * 1 2 3 28 28 H 1.08997 * 109.47272 * 60.28187 * 1 2 3 29 29 H 1.08999 * 109.49978 * 305.26312 * 4 2 1 30 30 H 1.09006 * 109.49488 * 185.17233 * 4 2 1 31 31 H 0.97005 * 120.00261 * 334.93550 * 7 5 4 32 32 H 0.97004 * 120.00382 * 180.02562 * 11 10 8 33 33 H 1.09007 * 109.49843 * 58.58325 * 16 5 4 34 34 H 1.08998 * 109.49619 * 178.68270 * 16 5 4 35 35 H 1.08999 * 109.59033 * 174.42689 * 17 16 5 36 36 H 1.09005 * 109.58200 * 294.84863 * 17 16 5 37 37 H 1.09000 * 109.46898 * 299.99609 * 21 19 18 38 38 H 1.08999 * 109.47040 * 60.00053 * 21 19 18 39 39 H 1.09000 * 109.47346 * 59.99706 * 23 22 21 40 40 H 1.08995 * 109.47713 * 179.97438 * 23 22 21 41 41 H 1.09007 * 109.47139 * 300.00317 * 23 22 21 42 42 H 1.09005 * 109.47355 * 59.99236 * 24 22 21 43 43 H 1.09000 * 109.48025 * 179.97438 * 24 22 21 44 44 H 1.09004 * 109.47290 * 300.00221 * 24 22 21 45 45 H 1.08994 * 109.46911 * 60.00118 * 25 22 21 46 46 H 1.09006 * 109.47504 * 180.02562 * 25 22 21 47 47 H 1.08999 * 109.47186 * 300.00354 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 1.2445 5 6 1.6472 -2.2044 1.1691 6 1 0.5624 -2.2837 1.0994 7 7 2.1110 -2.8977 2.3734 8 6 1.4756 -4.0345 2.7965 9 1 0.6323 -4.4198 2.2426 10 6 1.9185 -4.6946 3.9345 11 7 2.9495 -4.2280 4.6066 12 14 1.0522 -6.2458 4.5113 13 1 1.1247 -7.2783 3.4465 14 1 1.7137 -6.7546 5.7395 15 1 -0.3704 -5.9377 4.8061 16 6 2.2856 -2.8449 -0.0656 17 6 1.7719 -2.1400 -1.3249 18 7 2.0225 -0.6981 -1.1954 19 6 2.6919 -0.0285 -2.1546 20 8 2.8928 1.1616 -2.0357 21 6 3.1907 -0.7587 -3.3749 22 6 3.9117 0.2250 -4.2985 23 6 5.0964 0.8469 -3.5566 24 6 4.4176 -0.5161 -5.5378 25 6 2.9414 1.3283 -4.7255 26 1 -0.3634 -1.0276 0.0051 27 1 -0.3634 0.5182 0.8875 28 1 -0.3634 0.5094 -0.8925 29 1 1.6107 -0.2792 2.1366 30 1 3.1326 -0.6477 1.2891 31 1 2.8682 -2.5514 2.8712 32 1 3.2593 -4.6895 5.4016 33 1 3.3695 -2.7437 -0.0086 34 1 2.0199 -3.9012 -0.1059 35 1 2.2968 -2.5251 -2.1992 36 1 0.7016 -2.3167 -1.4316 37 1 3.8823 -1.5444 -3.0707 38 1 2.3468 -1.2021 -3.9033 39 1 5.7876 0.0609 -3.2523 40 1 5.6102 1.5474 -4.2147 41 1 4.7356 1.3750 -2.6738 42 1 3.5733 -0.9588 -6.0663 43 1 4.9308 0.1848 -6.1962 44 1 5.1087 -1.3024 -5.2340 45 1 2.5806 1.8564 -3.8429 46 1 3.4549 2.0290 -5.3840 47 1 2.0974 0.8854 -5.2542 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044457783.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:39 Heat of formation + Delta-G solvation = -59.954630 kcal Electronic energy + Delta-G solvation = -23657.769639 eV Core-core repulsion = 20453.335696 eV Total energy + Delta-G solvation = -3204.433943 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.57520 -39.43851 -37.25584 -36.14199 -33.96205 -33.38088 -31.07188 -29.16215 -28.48558 -28.06451 -27.97515 -25.93257 -24.35221 -23.24147 -21.85521 -19.92304 -19.40641 -18.83306 -18.21972 -16.83863 -16.65574 -16.43600 -15.67305 -15.52694 -15.27679 -15.16989 -15.11643 -14.88299 -14.52759 -14.08295 -13.94699 -13.71954 -13.14849 -13.00090 -12.93423 -12.86523 -12.82130 -12.71585 -12.62343 -12.41810 -12.21376 -12.18299 -12.07463 -11.96229 -11.85011 -11.65191 -11.52880 -11.49671 -11.08249 -10.85935 -10.32228 -9.54927 -8.99309 -7.91763 -5.20563 1.49007 1.51557 1.57505 1.71894 2.07122 2.58103 3.41426 3.56165 3.77742 3.82331 3.91769 3.98052 4.05724 4.13550 4.26326 4.29583 4.40077 4.55052 4.60467 4.62501 4.65990 4.68505 4.70698 4.82039 4.86952 4.88444 4.90153 5.01904 5.03871 5.07318 5.08889 5.12151 5.21009 5.26672 5.30741 5.34852 5.41232 5.53292 5.57434 5.58174 5.63791 5.75617 6.29661 6.55558 7.30462 7.35529 8.11797 8.34651 9.31815 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028700 B = 0.003702 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.386879 B = 7562.005922 C = 7876.546591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.147 3.853 3 H 0.085 0.915 4 C -0.123 4.123 5 C 0.175 3.825 6 H 0.053 0.947 7 N -0.739 5.739 8 C -0.235 4.235 9 H 0.080 0.920 10 C -0.078 4.078 11 N -0.973 5.973 12 Si 0.971 3.029 13 H -0.276 1.276 14 H -0.300 1.300 15 H -0.278 1.278 16 C -0.142 4.142 17 C 0.114 3.886 18 N -0.605 5.605 19 C 0.510 3.490 20 O -0.568 6.568 21 C -0.129 4.129 22 C -0.052 4.052 23 C -0.152 4.152 24 C -0.137 4.137 25 C -0.149 4.149 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.369 0.631 32 H 0.249 0.751 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.052 0.948 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.916 7.196 -20.698 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.043 3.957 3 H 0.103 0.897 4 C -0.162 4.162 5 C 0.067 3.933 6 H 0.071 0.929 7 N -0.378 5.378 8 C -0.367 4.367 9 H 0.098 0.902 10 C -0.270 4.270 11 N -0.624 5.624 12 Si 0.800 3.200 13 H -0.202 1.202 14 H -0.227 1.227 15 H -0.204 1.204 16 C -0.183 4.183 17 C -0.009 4.009 18 N -0.337 5.337 19 C 0.301 3.699 20 O -0.448 6.448 21 C -0.169 4.169 22 C -0.052 4.052 23 C -0.209 4.209 24 C -0.194 4.194 25 C -0.206 4.206 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.200 0.800 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.133 0.867 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.952 7.666 -20.625 22.090 hybrid contribution 0.242 -0.737 1.282 1.498 sum -1.710 6.929 -19.343 20.617 Atomic orbital electron populations 1.22059 0.93564 1.02815 1.02564 1.20995 0.95034 0.96263 0.83445 0.89713 1.22066 1.00183 0.96183 0.97737 1.20427 0.96875 0.89969 0.86065 0.92879 1.42680 1.37454 1.29141 1.28549 1.19602 1.09706 1.01204 1.06202 0.90243 1.25546 0.99590 1.02808 0.99017 1.69822 1.29224 1.42938 1.20402 0.85248 0.77811 0.79845 0.77091 1.20203 1.22683 1.20395 1.22460 1.00045 1.00154 0.95615 1.21869 1.02149 0.78371 0.98481 1.48373 1.55400 1.09829 1.20125 1.21221 0.76613 0.87337 0.84720 1.90547 1.58162 1.16800 1.79308 1.21889 1.02529 0.99195 0.93248 1.20296 0.95187 0.94850 0.94905 1.22063 0.97214 1.00606 1.01033 1.21851 1.01469 1.00073 0.96029 1.22034 0.98721 0.98375 1.01447 0.91781 0.91038 0.91900 0.91455 0.93580 0.80008 0.94216 0.93783 0.91591 0.87316 0.89835 0.87912 0.86721 0.93331 0.92722 0.92471 0.91462 0.92201 0.92142 0.92322 0.92887 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.03 71.98 0.65 -2.95 16 2 C 0.15 4.08 3.20 44.97 0.14 4.22 16 3 H 0.08 2.56 7.00 -2.39 -0.02 2.54 16 4 C -0.12 -4.09 5.03 30.67 0.15 -3.94 16 5 C 0.17 6.48 2.53 45.02 0.11 6.60 16 6 H 0.05 1.96 6.44 -2.39 -0.02 1.94 16 7 N -0.74 -36.40 5.12 -322.82 -1.65 -38.05 16 8 C -0.24 -12.64 9.93 84.03 0.83 -11.81 16 9 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 10 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 11 N -0.97 -59.42 13.06 21.65 0.28 -59.14 16 12 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 13 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 14 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 16 C -0.14 -4.47 5.66 30.67 0.17 -4.29 16 17 C 0.11 2.53 5.93 86.36 0.51 3.05 16 18 N -0.60 -15.25 2.68 -795.02 -2.13 -17.38 16 19 C 0.51 12.94 7.11 87.66 0.62 13.56 16 20 O -0.57 -17.74 10.76 -3.04 -0.03 -17.77 16 21 C -0.13 -2.32 3.12 29.85 0.09 -2.23 16 22 C -0.05 -0.95 0.77 -52.19 -0.04 -0.99 16 23 C -0.15 -3.32 8.18 71.98 0.59 -2.73 16 24 C -0.14 -1.84 8.47 71.98 0.61 -1.23 16 25 C -0.15 -2.92 8.17 71.98 0.59 -2.33 16 26 H 0.06 1.53 5.74 -2.39 -0.01 1.51 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.37 20.02 7.80 -92.70 -0.72 19.30 16 32 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 33 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.11 1.78 5.93 -2.39 -0.01 1.77 16 36 H 0.08 1.64 7.50 -2.38 -0.02 1.63 16 37 H 0.10 1.67 7.69 -2.39 -0.02 1.66 16 38 H 0.11 1.53 7.94 -2.39 -0.02 1.51 16 39 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 1.59 5.51 -2.38 -0.01 1.58 16 42 H 0.07 0.74 8.14 -2.38 -0.02 0.73 16 43 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.06 1.49 5.51 -2.39 -0.01 1.48 16 46 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -65.46 354.18 4.22 -61.24 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: 0.21 Total: 32.80 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 5.51 Total: -9.01 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -3.50 Total: -114.57 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.03 Total: -17.77 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -65.46 4.22 -61.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044457783.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.286 kcal (2) G-P(sol) polarization free energy of solvation -65.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds