Wall clock time and date at job start Tue Mar 31 2020 06:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.70375 * 2 1 4 4 C 1.53188 * 109.58966 * 120.36163 * 2 1 3 5 5 C 1.53037 * 109.31710 * 174.42250 * 4 2 1 6 6 H 1.09010 * 109.44972 * 58.64012 * 5 4 2 7 7 N 1.46491 * 109.46532 * 178.61091 * 5 4 2 8 8 C 1.36936 * 120.00263 * 205.06857 * 7 5 4 9 9 H 1.08004 * 120.00096 * 359.97438 * 8 7 5 10 10 C 1.38816 * 119.99871 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99675 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00363 * 359.97438 * 10 8 7 13 13 H 1.48494 * 109.47127 * 270.00157 * 12 10 8 14 14 H 1.48493 * 109.47257 * 149.99907 * 12 10 8 15 15 H 1.48508 * 109.46791 * 29.99926 * 12 10 8 16 16 C 1.53040 * 109.53706 * 298.63491 * 5 4 2 17 17 C 1.53190 * 109.31480 * 61.35914 * 16 5 4 18 18 N 1.46925 * 108.77880 * 305.36845 * 17 16 5 19 19 C 1.34777 * 120.63272 * 233.58778 * 18 17 16 20 20 O 1.21279 * 120.00072 * 174.94790 * 19 18 17 21 21 C 1.50696 * 119.99911 * 354.94480 * 19 18 17 22 22 C 1.53004 * 109.47106 * 180.02562 * 21 19 18 23 23 C 1.52996 * 109.46936 * 60.00085 * 22 21 19 24 24 C 1.52997 * 109.46956 * 180.02562 * 22 21 19 25 25 C 1.52994 * 109.46918 * 300.00014 * 22 21 19 26 26 H 1.08996 * 109.46853 * 175.99354 * 1 2 3 27 27 H 1.09002 * 109.46863 * 295.98813 * 1 2 3 28 28 H 1.08997 * 109.47347 * 55.98810 * 1 2 3 29 29 H 1.09000 * 109.49947 * 54.46310 * 4 2 1 30 30 H 1.09010 * 109.49218 * 294.36884 * 4 2 1 31 31 H 0.96999 * 119.99853 * 25.06834 * 7 5 4 32 32 H 0.97001 * 119.99461 * 180.02562 * 11 10 8 33 33 H 1.09006 * 109.50107 * 181.31601 * 16 5 4 34 34 H 1.09007 * 109.49739 * 301.37835 * 16 5 4 35 35 H 1.09001 * 109.58623 * 65.15923 * 17 16 5 36 36 H 1.09001 * 109.59126 * 185.43985 * 17 16 5 37 37 H 1.09003 * 109.47324 * 300.00155 * 21 19 18 38 38 H 1.09000 * 109.47078 * 60.00379 * 21 19 18 39 39 H 1.09003 * 109.47285 * 60.00252 * 23 22 21 40 40 H 1.09001 * 109.46777 * 179.97438 * 23 22 21 41 41 H 1.08996 * 109.47549 * 300.00146 * 23 22 21 42 42 H 1.09000 * 109.47189 * 60.00123 * 24 22 21 43 43 H 1.09001 * 109.47119 * 179.97438 * 24 22 21 44 44 H 1.08997 * 109.47379 * 300.00285 * 24 22 21 45 45 H 1.09005 * 109.47584 * 60.00202 * 25 22 21 46 46 H 1.09000 * 109.47157 * 179.97438 * 25 22 21 47 47 H 1.09000 * 109.47316 * 299.99932 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 3.5675 -0.8481 1.1700 6 1 4.0060 0.1474 1.0990 7 7 4.0653 -1.5158 2.3751 8 6 5.3494 -1.2977 2.7980 9 1 5.9953 -0.6337 2.2427 10 6 5.8208 -1.9302 3.9402 11 7 7.0552 -1.7209 4.3463 12 14 4.7035 -3.0781 4.9010 13 1 3.9686 -2.3042 5.9335 14 1 5.5210 -4.1290 5.5586 15 1 3.7324 -3.7138 3.9745 16 6 3.9569 -1.6657 -0.0637 17 6 3.4650 -0.9469 -1.3238 18 7 2.0225 -0.6995 -1.1946 19 6 1.1674 -1.1061 -2.1537 20 8 -0.0281 -0.9785 -1.9940 21 6 1.6966 -1.7193 -3.4244 22 6 0.5264 -2.0899 -4.3378 23 6 -0.2761 -0.8315 -4.6744 24 6 1.0638 -2.7129 -5.6277 25 6 -0.3785 -3.0962 -3.6243 26 1 -0.3633 -1.0251 -0.0718 27 1 -0.3633 0.4503 0.9238 28 1 -0.3634 0.5748 -0.8518 29 1 1.6030 -1.7254 1.2912 30 1 1.7661 -0.1669 2.1368 31 1 3.4853 -2.1125 2.8736 32 1 7.3847 -2.1631 5.1443 33 1 5.0413 -1.7696 -0.1039 34 1 3.4988 -2.6531 -0.0052 35 1 3.9903 0.0021 -1.4318 36 1 3.6540 -1.5706 -2.1976 37 1 2.3410 -1.0021 -3.9330 38 1 2.2687 -2.6155 -3.1846 39 1 0.3686 -0.1145 -5.1828 40 1 -1.1095 -1.0955 -5.3255 41 1 -0.6589 -0.3880 -3.7553 42 1 1.6353 -3.6095 -5.3875 43 1 0.2301 -2.9774 -6.2782 44 1 1.7088 -1.9963 -6.1362 45 1 -0.7614 -2.6528 -2.7051 46 1 -1.2124 -3.3599 -4.2748 47 1 0.1933 -3.9927 -3.3845 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044457784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:43 Heat of formation + Delta-G solvation = -24.467844 kcal Electronic energy + Delta-G solvation = -23782.942297 eV Core-core repulsion = 20580.047177 eV Total energy + Delta-G solvation = -3202.895120 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.71155 -38.16230 -36.38689 -34.63331 -32.83748 -31.96666 -29.93399 -28.27384 -27.30550 -27.23937 -26.96180 -24.30481 -22.73019 -21.95018 -20.24631 -19.45186 -18.49828 -17.58936 -16.74971 -15.91538 -15.55796 -14.86148 -14.61361 -14.49939 -14.40086 -14.05008 -13.69127 -13.51153 -13.28267 -12.82712 -12.60931 -12.36072 -12.25492 -12.15999 -12.13013 -11.87333 -11.83792 -11.48773 -11.33420 -11.01732 -11.01047 -10.89818 -10.84517 -10.76181 -10.73819 -10.52454 -10.28049 -9.91699 -9.62493 -8.95989 -8.74430 -8.39901 -7.31735 -5.81038 -3.16821 2.69529 3.06304 3.35205 3.38643 3.43271 4.50194 4.55893 4.55922 4.71670 4.95355 4.98849 5.05191 5.20511 5.28971 5.35264 5.37782 5.42354 5.45645 5.50949 5.52193 5.56613 5.66077 5.75039 5.76530 5.81534 5.82263 5.92090 6.00026 6.01970 6.03024 6.05346 6.13354 6.27549 6.32845 6.35940 6.40981 6.42888 6.53884 6.67792 6.81976 6.94457 7.56804 7.94596 8.31924 8.38202 9.16413 9.89329 10.09162 11.37197 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.003909 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.179889 B = 7160.828831 C = 7406.031465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.147 3.853 3 H 0.070 0.930 4 C -0.139 4.139 5 C 0.184 3.816 6 H 0.056 0.944 7 N -0.748 5.748 8 C -0.245 4.245 9 H 0.090 0.910 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.278 1.278 16 C -0.151 4.151 17 C 0.107 3.893 18 N -0.605 5.605 19 C 0.516 3.484 20 O -0.532 6.532 21 C -0.135 4.135 22 C -0.050 4.050 23 C -0.152 4.152 24 C -0.142 4.142 25 C -0.153 4.153 26 H 0.070 0.930 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.361 0.639 32 H 0.260 0.740 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.085 0.915 46 H 0.047 0.953 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.862 0.907 -18.102 22.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.044 3.956 3 H 0.088 0.912 4 C -0.178 4.178 5 C 0.074 3.926 6 H 0.074 0.926 7 N -0.390 5.390 8 C -0.374 4.374 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.581 5.581 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.204 1.204 16 C -0.192 4.192 17 C -0.016 4.016 18 N -0.338 5.338 19 C 0.305 3.695 20 O -0.411 6.411 21 C -0.175 4.175 22 C -0.051 4.051 23 C -0.209 4.209 24 C -0.200 4.200 25 C -0.210 4.210 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.193 0.807 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.104 0.896 46 H 0.066 0.934 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.224 1.064 -17.956 22.326 hybrid contribution -0.303 -1.008 0.775 1.307 sum -13.527 0.056 -17.181 21.867 Atomic orbital electron populations 1.22190 0.92775 1.03634 1.00311 1.21276 0.95431 0.95027 0.83898 0.91183 1.22337 0.97444 1.00935 0.97061 1.20135 0.90835 0.95311 0.86330 0.92595 1.42799 1.13217 1.54808 1.28183 1.19067 0.87722 1.23332 1.07318 0.89178 1.24671 0.96100 1.00078 0.98202 1.69703 1.15102 1.47166 1.26139 0.86561 0.80342 0.81281 0.80395 1.21053 1.21747 1.20386 1.22635 1.02094 0.99760 0.94733 1.21845 0.79610 1.00646 0.99525 1.48283 1.07691 1.57518 1.20333 1.20578 0.86430 0.77866 0.84624 1.90608 1.15501 1.55738 1.79246 1.21860 0.99403 1.01946 0.94257 1.20254 0.94317 0.96411 0.94084 1.22100 0.99303 0.96547 1.02961 1.21903 1.00855 1.00458 0.96756 1.22105 0.98829 0.97839 1.02231 0.91102 0.94193 0.91332 0.91957 0.90679 0.80655 0.93036 0.90195 0.92340 0.91387 0.90310 0.89246 0.89144 0.93762 0.93376 0.89618 0.92727 0.92559 0.92780 0.89618 0.93371 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 7.59 37.16 0.28 -1.47 16 2 C 0.15 1.98 3.49 -67.60 -0.24 1.75 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.14 -2.15 4.84 -26.61 -0.13 -2.28 16 5 C 0.18 3.32 2.73 -67.90 -0.19 3.14 16 6 H 0.06 1.05 8.08 -51.92 -0.42 0.63 16 7 N -0.75 -17.14 4.92 -53.39 -0.26 -17.40 16 8 C -0.24 -6.69 10.41 -15.06 -0.16 -6.85 16 9 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 10 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 11 N -0.93 -28.89 13.97 55.49 0.78 -28.11 16 12 Si 0.88 21.93 27.74 -169.99 -4.71 17.21 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 15 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 16 C -0.15 -2.38 5.66 -26.61 -0.15 -2.53 16 17 C 0.11 1.29 6.32 -3.71 -0.02 1.26 16 18 N -0.60 -7.70 2.97 -165.22 -0.49 -8.19 16 19 C 0.52 6.40 7.02 -10.99 -0.08 6.32 16 20 O -0.53 -7.42 6.75 5.56 0.04 -7.38 16 21 C -0.13 -1.32 3.17 -27.88 -0.09 -1.41 16 22 C -0.05 -0.48 0.77 -154.51 -0.12 -0.60 16 23 C -0.15 -1.53 8.18 37.16 0.30 -1.23 16 24 C -0.14 -1.14 8.47 37.16 0.31 -0.82 16 25 C -0.15 -1.63 8.17 37.15 0.30 -1.32 16 26 H 0.07 1.04 6.73 -51.93 -0.35 0.69 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.94 6.77 -51.93 -0.35 0.59 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 31 H 0.36 8.28 5.66 -40.82 -0.23 8.05 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.77 5.97 -51.93 -0.31 0.46 16 37 H 0.09 0.76 8.11 -51.93 -0.42 0.34 16 38 H 0.09 0.83 7.48 -51.93 -0.39 0.44 16 39 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 1.04 5.51 -51.93 -0.29 0.75 16 42 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 1.10 5.51 -51.93 -0.29 0.81 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 349.59 15.07 5.27 5.27 Total: -1.00 -30.21 349.59 -8.00 -38.21 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -8.55 Total: 6.38 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.06 Total: -5.98 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.02 Total: -53.71 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: 0.04 Total: -7.38 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.21 -8.00 -38.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044457784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.745 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds